| Line | Reference | Model |
|---|
| 1 | Anderson WS, Kudela P, Cho J, Bergey GK, Franaszczuk PJ (2007) [PubMed]
| Studies of stimulus parameters for seizure disruption using NN simulations (Anderson et al. 2007) |
| 2 | Bartos M, Vida I, Frotscher M, Meyer A, Monyer H, Geiger JR, Jonas P (2002) [PubMed]
| Gamma oscillations in hippocampal interneuron networks (Bartos et al 2002) |
| 3 | Bathellier B, Lagier S, Faure P, Lledo PM (2006) | Olfactory bulb network model of gamma oscillations (Bathellier et al. 2006; Lagier et al. 2007) |
| 4 | Bathellier B, Lagier S, Faure P, Lledo PM (2006) [PubMed]
| Olfactory bulb network model of gamma oscillations (Bathellier et al. 2006; Lagier et al. 2007) |
| 5 | Baxter DA, Byrne JH (2007) | Homosynaptic plasticity in the tail withdrawal circuit (TWC) of Aplysia (Baxter and Byrne 2006) |
| 6 | Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (1998) [PubMed]
| Thalamocortical augmenting response (Bazhenov et al 1998) |
| 7 | Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (2002) [PubMed]
| Sleep-wake transitions in corticothalamic system (Bazhenov et al 2002) |
| 8 | Bogaard A, Parent J, Zochowski M, Booth V (2009) [PubMed]
| Small world networks of Type I and Type II Excitable Neurons (Bogaard et al. 2009) |
| 9 | Bose A, Manor Y, Nadim F (2004) [PubMed]
| The activity phase of postsynaptic neurons (Bose et al 2004) |
| 10 | Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, et al. (2007) [PubMed]
| Networks of spiking neurons: a review of tools and strategies (Brette et al. 2007) |
| 11 | Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, et al. (2007) [PubMed]
| KInNeSS : a modular framework for computational neuroscience (Versace et al. 2008) |
| 12 | Calin-Jageman RJ, Tunstall MJ, Mensh BD, Katz PS, Frost WN (2007) [PubMed]
| Updated Tritonia Swim CPG (Calin-Jagemann et al. 2007) |
| 13 | Carver S, Roth E, Cowan NJ, Fortune ES (2008) [PubMed]
| Synaptic plasticity can produce and enhance direction selectivity (Carver et al, 2008) |
| 14 | Cataldo E, Byrne JH, Baxter DA (2006) | Computational Model of a Central Pattern Generator (Cataldo et al 2006) |
| 15 | Chandrasekaran L, Matveev V, Bose A (2009) | Multistability of clustered states in a globally inhibitory network (Chandrasekaran et al. 2009) |
| 16 | Cisi RR, Kohn AF (2008) [PubMed]
| Simulation system of spinal cord motor nuclei and assoc. nerves and muscles (Cisi and Kohn 2008) |
| 17 | Cruz GE, Sahley CL, Muller KJ (2007) [PubMed]
| Competition for AP initiation sites in a circuit controlling simple learning (Cruz et al. 2007) |
| 18 | Cutsuridis V, Cobb S, Graham BP (2009) | Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009) |
| 19 | David F, Linster C, Cleland TA (2008) [PubMed]
| Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008) |
| 20 | Davison AP, Feng J, Brown D (2003) [PubMed]
| Olfactory Bulb Network (Davison et al 2003) |
| 21 | Davison AP, Fregnac Y (2006) [PubMed]
| Learning spatial transformations through STDP (Davison, Frégnac 2006) |
| 22 | Destexhe A, Bal T, McCormick DA, Sejnowski TJ (1996) [PubMed]
| Thalamocortical and Thalamic Reticular Network (Destexhe et al 1996) |
| 23 | Destexhe A, Contreras D, Sejnowski TJ, Steriade M (1994) [PubMed]
| Thalamic Reticular Network (Destexhe et al 1994) |
| 24 | Du X, Ghosh BK, Ulinski P (2005) [PubMed]
| Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006) |
| 25 | Du X, Ghosh BK, Ulinski P (2006) [PubMed]
| Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006) |
| 26 | Durstewitz D, Gabriel T (2006) [PubMed]
| Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006) |
| 27 | Dyhrfjeld-Johnsen J, Santhakumar V, Morgan RJ, Huerta R, Tsimring L, Soltesz I (2007) [PubMed]
| Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) |
| 28 | Edin F, Macoveanu J, Olesen P, Tegner J, Klingberg T (2007) [PubMed]
| Fronto-parietal visuospatial WM model with HH cells (Edin et al 2007) |
| 29 | Edwards FR, Hirst GD (2006) [PubMed]
| Slow wave propagation in the guinea-pig gastric antrum (Hirst et al. 2006, Edwards and Hirst 2006) |
| 30 | Feng XJ, Shea-Brown E, Greenwald B, Kosut R, Rabitz H (2007) [PubMed]
| Optimal deep brain stimulation of the subthalamic nucleus-a computational study (Feng et al. 2007) |
| 31 | Ferrante M, Migliore M, Ascoli GA (2009) | Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009) |
| 32 | Frank MJ (2005) [PubMed]
| Dynamic dopamine modulation in the basal ganglia: Learning in Parkinson (Frank et al 2004,2005) |
| 33 | Frank MJ, Seeberger LC, O [PubMed]
| Dynamic dopamine modulation in the basal ganglia: Learning in Parkinson (Frank et al 2004,2005) |
| 34 | Gansert J, Golowasch J, Nadim F (2007) [PubMed]
| Gap-junction coupled network activity depends on coupled dendrites diameter (Gansert et al. 2007) |
| 35 | Getting PA (1983) [PubMed]
| Classic model of the Tritonia Swim CPG (Getting, 1989) |
| 36 | Getting PA (1989) | Classic model of the Tritonia Swim CPG (Getting, 1989) |
| 37 | Girard B, Tabareau N, Pham QC, Berthoz A, Slotine JJ (2008) [PubMed]
| A contracting model of the basal ganglia (Girard et al. 2008) |
| 38 | Golomb D, Ahissar E, Kleinfeld D (2006) [PubMed]
| Coding of stimulus frequency by latency in thalamic networks (Golomb et al 2005) |
| 39 | Golomb D, Shedmi A, Curtu R, Ermentrout GB (2006) [PubMed]
| Persistent synchronized bursting activity in cortical tissues (Golomb et al 2005) |
| 40 | Grisham W, Schottler NA, Krasne FB (2008) | Software for teaching neurophysiology of neuronal circuits (Grisham et al. 2008) |
| 41 | Grossberg S and Versace M (2008) | Spikes,synchrony,and attentive learning by laminar thalamocort. circuits (Grossberg & Versace 2007) |
| 42 | Gurney K, Prescott TJ, Redgrave P (2001) [PubMed]
| A contracting model of the basal ganglia (Girard et al. 2008) |
| 43 | Gurney K, Prescott TJ, Redgrave P (2001) [PubMed]
| Population-level model of the basal ganglia and action selection (Gurney et al 2001, 2004) |
| 44 | Gurney K, Prescott TJ, Redgrave P (2001) [PubMed]
| Population-level model of the basal ganglia and action selection (Gurney et al 2001, 2004) |
| 45 | Gurney KN, Humphries M, Wood R, Prescott TJ, Redgrave P (2004) [PubMed]
| Population-level model of the basal ganglia and action selection (Gurney et al 2001, 2004) |
| 46 | Hadipour-Niktarash A (2006) [PubMed]
| Thalamic transformation of pallidal input (Hadipour-Niktarash 2006) |
| 47 | Haeusler S, Maass W (2006) [PubMed]
| Information-processing in lamina-specific cortical microcircuits (Haeusler and Maass 2006) |
| 48 | Haeusler S, Markram H, Maass W (2003) | High dimensional dynamics and low dimensional readouts in neural microcircuits (Haeusler et al 2006) |
| 49 | Hajos M, Hoffmann WE, Orban G, Kiss T, Erdi P (2004) [PubMed]
| Modulation of septo-hippocampal theta activity by GABAA receptors (Hajos et al. 2004) |
| 50 | Hasselmo ME, Schnell E, Barkai E (1995) [PubMed]
| Fixed point attractor (Hasselmo et al 1995) |
| 51 | Heinzle J, Hepp K, Martin KA (2007) [PubMed]
| A microcircuit model of the frontal eye fields (Heinzle et al. 2007) |
| 52 | Hill AA, Lu J, Masino MA, Olsen OH, Calabrese RL (2001) [PubMed]
| Leech heart interneuron network model (Hill et al 2001, 2002) |
| 53 | Hill AA, Masino MA, Calabrese RL (2002) [PubMed]
| Leech heart interneuron network model (Hill et al 2001, 2002) |
| 54 | Hines M, Eichner H, Schuermann F (2008) [PubMed]
| Cell splitting in neural networks extends strong scaling (Hines et al. 2008) |
| 55 | Hines ML, Carnevale NT (2008) [PubMed]
| Translating network models to parallel hardware in NEURON (Hines and Carnevale 2008) |
| 56 | Hirst GD, Garcia-Londono AP, Edwards FR (2006) [PubMed]
| Slow wave propagation in the guinea-pig gastric antrum (Hirst et al. 2006, Edwards and Hirst 2006) |
| 57 | Hjorth J, Blackwell KT, Kotaleski JH (2009) | Gap junction coupled network of striatal fast spiking interneurons (Hjorth et al. 2009) |
| 58 | Hopfield JJ, Brody CD (2000) [PubMed]
| Hopfield and Brody model (Hopfield, Brody 2000) |
| 59 | Hopfield JJ, Brody CD (2001) [PubMed]
| Hopfield and Brody model (Hopfield, Brody 2000) |
| 60 | Horcholle-Bossavit G, Quenet B (2009) [PubMed]
| Neural model of frog ventilatory rhythmogenesis (Horcholle-Bossavit and Quenet 2009) |
| 61 | Huang CW, Cheng JT, Tsai JJ, Wu SN, Huang CC (2009) [PubMed]
| Contribution of ATP-sensitive potassium channels in the neuronal network (Huang et al. 2009) |
| 62 | Humphries MD (2003) | Population-level model of the basal ganglia and action selection (Gurney et al 2001, 2004) |
| 63 | Humphries MD, Stewart RD, Gurney KN (2006) [PubMed]
| Spiking neuron model of the basal ganglia (Humphries et al 2006) |
| 64 | Izhikevich EM (2005) [PubMed]
| Polychronization: Computation With Spikes (Izhikevich 2005) |
| 65 | Izhikevich EM (2007) [PubMed]
| Linking STDP and Dopamine action to solve the distal reward problem (Izhikevich 2007) |
| 66 | Jiang N, Englehart KB, Parker PA (2006) [PubMed]
| A simulation method for the firing sequences of motor units (Jiang et al 2006) |
| 67 | Jones SR, Pritchett DL, Stufflebeam SM, Hamalainen M, Moore CI (2007) [PubMed]
| MEG of Somatosensory Neocortex (Jones et al. 2007) |
| 68 | Kim H, Bao S (2008) [PubMed]
| Distributed representation of perceptual categories in the auditory cortex (Kim and Bao 2008) |
| 69 | Koendgen H, Geisler C, Fusi S, Wang XJ, Luscher HR, Giugliano M (2008) [PubMed]
| Response properties of neocort. neurons to temporally modulated noisy inputs (Koendgen et al. 2008) |
| 70 | Koendgen H, Geisler C, Wang XJ, Fusi S, Luescher HR, Giugliano M (2004) | Response properties of neocort. neurons to temporally modulated noisy inputs (Koendgen et al. 2008) |
| 71 | Kuznetsova AY, Deth RC (2008) [PubMed]
| Modulation of neuronal synchronization by D4 dopamine receptor-mediated phospholipid methylation |
| 72 | Lagier S, Panzanelli P, Russo RE, Nissant A, Bathellier B, Sassoe-Pognetto M, et al. (2007) [PubMed]
| Olfactory bulb network model of gamma oscillations (Bathellier et al. 2006; Lagier et al. 2007) |
| 73 | Legenstein R, Pecevski D, Maass W (2008) [PubMed]
| Reward modulated STDP (Legenstein et al. 2008) |
| 74 | Lytton WW (1997) [PubMed]
| Computer model of clonazepam`s effect in thalamic slice (Lytton 1997) |
| 75 | Lytton WW (1998) [PubMed]
| Feedforward heteroassociative network with HH dynamics (Lytton 1998) |
| 76 | Lytton WW, Contreras D, Destexhe A, Steriade M (1997) [PubMed]
| Thalamic quiescence of spike and wave seizures (Lytton et al 1997) |
| 77 | Lytton WW, Lipton P (1999) [PubMed]
| Hippocampus temporo-septal engram shift model (Lytton 1999) |
| 78 | Lytton WW, Omurtag A (2007) [PubMed]
| Tonic-clonic transitions in a seizure simulation (Lytton and Omurtag 2007) |
| 79 | Lytton WW, Omurtag A, Neymotin SA, Hines ML (2008) [PubMed]
| JitCon: Just in time connectivity for large spiking networks (Lytton et al. 2008) |
| 80 | Lytton WW, Orman R, Stewart M (2008) [PubMed]
| Broadening of activity with flow across neural structures (Lytton et al. 2008) |
| 81 | Maass W, Joshi P, Sontag ED (2006) | Computational aspects of feedback in neural circuits (Maass et al 2006) |
| 82 | Maass W, Joshi P, Sontag ED (2007) [PubMed]
| Computational aspects of feedback in neural circuits (Maass et al 2006) |
| 83 | Maex R, De Schutter E (1998) [PubMed]
| Network model of the granular layer of the cerebellar cortex (Maex, De Schutter 1998) |
| 84 | Maex R, De Schutter E (2003) [PubMed]
| Fast oscillations in inhibitory networks (Maex, De Schutter 2003) |
| 85 | Masquelier T, Hugues E, Deco G, Thorpe SJ (2009) [PubMed]
| Oscillations, phase-of-firing coding and STDP: an efficient learning scheme (Masquelier et al. 2009) |
| 86 | Matveev V, Bose A, Nadim F (2007) [PubMed]
| Two-cell inhibitory network bursting dynamics captured in a one-dimensional map (Matveev et al 2007) |
| 87 | Migliore M, Cannia C, Lytton WW, Markram H, Hines ML (2006) [PubMed]
| Parallel network simulations with NEURON (Migliore et al 2006) |
| 88 | Migliore M, Hines ML, Shepherd GM (2005) [PubMed]
| Olfactory bulb mitral cell: synchronization by gap junctions (Migliore et al 2005) |
| 89 | Migliore M, Inzirillo C, Shepherd GM (2007) [PubMed]
| Olfactory bulb mitral and granule cell column formation (Migliore et al. 2007) |
| 90 | Migliore M, Shepherd GM (2008) [PubMed]
| Olfactory bulb mitral and granule cell: dendrodendritic microcircuits (Migliore and Shepherd 2008) |
| 91 | Miller P, Wang XJ (2006) [PubMed]
| Inhibitory control by an integral feedback signal in prefrontal cortex (Miller and Wang 2006) |
| 92 | Morgan RJ, Santhakumar V, Soltesz I (2007) [PubMed]
| Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) |
| 93 | Morgan RJ, Soltesz I (2008) [PubMed]
| Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) |
| 94 | Morita K (2008) [PubMed]
| Working memory circuit with branched dendrites (Morita 2008) |
| 95 | Moss BL, Fuller AD, Sahley CL, Burrell BD (2005) [PubMed]
| S cell network (Moss et al 2005) |
| 96 | Nadim F, Manor Y, Nusbaum MP, Marder E (1998) [PubMed]
| Regulation of a slow STG rhythm (Nadim et al 1998) |
| 97 | Nenadic Z, Ghosh BJ, Ulinski P (2003) [PubMed]
| Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006) |
| 98 | Nenadic Z, Ghosh BK, Ulinski PS (2002) [PubMed]
| Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006) |
| 99 | Oh M, Matveev V (2009) [PubMed]
| Loss of phase-locking in non-weakly coupled inhib. networks of type-I neurons (Oh and Matveev 2009) |
| 100 | Okamoto H, Isomura Y, Takada M, Fukai T (2007) [PubMed]
| Temporal integration by stochastic recurrent network (Okamoto et al. 2007) |
| 101 | Olypher AV, Calabrese RL (2007) [PubMed]
| Activity constraints on stable neuronal or network parameters (Olypher and Calabrese 2007) |
| 102 | Pascual A, Modolo J, Beuter A (2006) [PubMed]
| Study of augmented Rubin and Terman 2004 deep brain stim. model in Parkinsons (Pascual et al. 2006) |
| 103 | Phares GA, Antzoulatos EG, Baxter DA, Byrne JH (2003) [PubMed]
| Burst induced synaptic plasticity in Apysia sensorimotor neurons (Phares et al 2003) |
| 104 | Pirini M, Rocchi L, Sensi M, Chiari L (2009) [PubMed]
| Investigation of different targets in deep brain stimulation for Parkinson`s (Pirini et al. 2009) |
| 105 | Prescott TJ, Montes Gonzalez FM, Gurney K, Humphries MD, Redgrave P (2006) [PubMed]
| A contracting model of the basal ganglia (Girard et al. 2008) |
| 106 | Publio R, Oliveira RF, Roque AC (2009) [PubMed]
| A network model of the vertebrate retina (Publio et al. 2009) |
| 107 | Robbins KA, Senseman DM (2004) [PubMed]
| Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006) |
| 108 | Roberts PD (2007) [PubMed]
| Stability of complex spike timing-dependent plasticity in cerebellar learning (Roberts 2007) |
| 109 | Rubin JE, Terman D (2004) [PubMed]
| High frequency stimulation of the Subthalamic Nucleus (Rubin and Terman 2004) |
| 110 | Rubin JE, Terman D (2004) [PubMed]
| Optimal deep brain stimulation of the subthalamic nucleus-a computational study (Feng et al. 2007) |
| 111 | Rulkov NF, Timofeev I, Bazhenov M (2004) [PubMed]
| Large cortex model with map-based neurons (Rulkov et al 2004) |
| 112 | Santhakumar V, Aradi I, Soltesz I (2005) [PubMed]
| Dentate gyrus network model (Santhakumar et al 2005) |
| 113 | Santhakumar V, Aradi I, Soltesz I (2005) [PubMed]
| Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) |
| 114 | Saraga F, Ng L, Skinner FK (2006) [PubMed]
| Hippocampal basket cell gap junction network dynamics (Saraga et al. 2006) |
| 115 | Shanahan M (2008) [PubMed]
| A spiking model of cortical broadcast and competition (Shanahan 2008) |
| 116 | Shao J, Lai D, Meyer U, Luksch H, Wessel R (2009) [PubMed]
| Generating oscillatory bursts from a network of regular spiking neurons (Shao et al. 2009) |
| 117 | Stein W, Straub O, Ausborn J, Mader W, Wolf H (2008) [PubMed]
| A model of the femur-tibia control system in stick insects (Stein et al. 2008) |
| 118 | Stewart RD, Bair W (2009) [PubMed]
| Numerical Integration of Izhikevich and HH model neurons (Stewart and Bair 2009) |
| 119 | Talathi SS, Hwang DU, Ditto WL (2008) [PubMed]
| STDP promotes synchrony of inhibitory networks in the presence of heterogeneity (Talathi et al 2008) |
| 120 | Terman D, Rubin JE, Yew AC, Wilson CJ (2002) [PubMed]
| Optimal deep brain stimulation of the subthalamic nucleus-a computational study (Feng et al. 2007) |
| 121 | Thomas EA, Reid CA, Berkovic SF, Petrou S (2009) [PubMed]
| Epilepsy may be caused by very small functional changes in ion channels (Thomas et al. 2009) |
| 122 | Thomas EA, Reid CA, Petrou S (2009) [PubMed]
| Na channel mutations in the dentate gyrus (Thomas et al. 2009) |
| 123 | Traub RD, Contreras D, Cunningham MO, Murray H, Lebeau FE, Roopun A, Bibbig A, et al (2005) [PubMed]
| A single column thalamocortical network model (Traub et al 2005) |
| 124 | Traub RD, Contreras D, Whittington MA (2005) [PubMed]
| A single column thalamocortical network model (Traub et al 2005) |
| 125 | Ursino M, Cuppini C, Magosso E, Serino A, di Pellegrino G (2009) [PubMed]
| Multisensory integration in the superior colliculus: a neural network model (Ursino et al. 2009) |
| 126 | Varkonyi PL, Kiemel T, Hoffman K, Cohen AH, Holmes P (2008) [PubMed]
| Phase oscillator models for lamprey central pattern generators (Varkonyi et al. 2008) |
| 127 | Vazquez Y, Mendez B, Trueta C, De-Miguel FF (2009) [PubMed]
| Electrically-coupled Retzius neurons (Vazquez et al. 2009) |
| 128 | Versace M, Ames H, Leveille J, Fortenberry B, Gorchetchnikov A (2008) | KInNeSS : a modular framework for computational neuroscience (Versace et al. 2008) |
| 129 | Vogels TP, Abbott LF (2005) [PubMed]
| Networks of spiking neurons: a review of tools and strategies (Brette et al. 2007) |
| 130 | Wang H, Fan J (2007) [PubMed]
| Human Attentional Networks: A Connectionist Model (Wang and Fan 2007) |
| 131 | Wang W (2006) | Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006) |
| 132 | Wang W, Campaigne C, Ghosh BK, Ulinski PS (2005) [PubMed]
| Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006) |
| 133 | Wang W, Luo S, Ghosh BK, Ulinski PS (2006) [PubMed]
| Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006) |
| 134 | Wang XJ, Buzsaki G (1996) [PubMed]
| Gamma oscillations in hippocampal interneuron networks (Wang, Buzsaki 1996) |
| 135 | Weiler N, Wood L, Yu J, Solla SA, Shepherd GM (2008) [PubMed]
| Laminar connectivity matrix simulation (Weiler et al 2008) |
| 136 | White JA, Ziv I, Cleary LJ, Baxter DA, Byrne JH (1993) [PubMed]
| A network model of tail withdrawal in Aplysia (White et al 1993) |
| 137 | Wilson HR, Cowan JD (1972) [PubMed]
| Excitatory and inhibitory interactions in populations of model neurons (Wilson and Cowan 1972) |
| 138 | Wohrer A, Kornprobst P (2009) [PubMed]
| Virtual Retina: biological retina simulator, with contrast gain control (Wohrer and Kornprobst 2009) |
| 139 | Yamazaki T, Tanaka S (2005) [PubMed]
| Neural modeling of an internal clock (Yamazaki and Tanaka 2008) |
| 140 | Yamazaki T, Tanaka S (2009) | Robust Reservoir Generation by Correlation-Based Learning (Yamazaki & Tanaka 2008) |
