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Computational model list

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  Name     
1 A Moth MGC Model-A HH network with quantitative rate reduction (Buckley & Nowotny 2011)
2 A contracting model of the basal ganglia (Girard et al. 2008)
3 A detailed and fast model of extracellular recordings (Camunas-Mesa & Qurioga 2013)
4 A large-scale model of the functioning brain (spaun) (Eliasmith et al. 2012)
5 A microcircuit model of the frontal eye fields (Heinzle et al. 2007)
6 A model of the femur-tibia control system in stick insects (Stein et al. 2008)
7 A model of the temporal pattern generator of C. elegans egg-laying behavior (Zhang et. al 2010)
8 A network model of tail withdrawal in Aplysia (White et al 1993)
9 A network model of the vertebrate retina (Publio et al. 2009)
10 A simulation method for the firing sequences of motor units (Jiang et al 2006)
11 A single column thalamocortical network model (Traub et al 2005)
12 A spiking model of cortical broadcast and competition (Shanahan 2008)
13 A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013)
14 Activity constraints on stable neuronal or network parameters (Olypher and Calabrese 2007)
15 An attractor network model of grid cells and theta-nested gamma oscillations (Pastoll et al., 2013)
16 Asynchronous irregular and up/down states in excitatory and inhibitory NNs (Destexhe 2009)
17 Axonal gap junctions produce fast oscillations in cerebellar Purkinje cells (Traub et al. 2008)
18 Basal ganglia network model of subthalamic deep brain stimulation (Hahn and McIntyre 2010)
19 Basal ganglia-thalamic network model for deep brain stimulation (So et al. 2011)
20 Biophysical model for field potentials of networks of I&F neurons (beim Graben & Serafim 2013)
21 Biophysically realistic neural modeling of the MEG mu rhythm (Jones et al. 2009)
22 Broadening of activity with flow across neural structures (Lytton et al. 2008)
23 Burst induced synaptic plasticity in Apysia sensorimotor neurons (Phares et al 2003)
24 Bursting respiratory net: clustered architecture gives large phase diff`s (Fietkiewicz et al 2011)
25 CA1 pyramidal cell: reconstructed axonal arbor and failures at weak gap junctions (Vladimirov 2011)
26 Ca2+-activated I_CAN and synaptic depression promotes network-dependent oscil. (Rubin et al. 2009)
27 Cancelling redundant input in ELL pyramidal cells (Bol et al. 2011)
28 Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
29 Cerebellar cortex oscil. robustness from Golgi cell gap jncs (Simoes de Souza and De Schutter 2011)
30 Cerebellar gain and timing control model (Yamazaki & Tanaka 2007)(Yamazaki & Nagao 2012)
31 Classic model of the Tritonia Swim CPG (Getting, 1989)
32 Coding of stimulus frequency by latency in thalamic networks (Golomb et al 2005)
33 Competing oscillator 5-cell circuit and Parameterscape plotting (Gutierrez et al. 2013)
34 Competition for AP initiation sites in a circuit controlling simple learning (Cruz et al. 2007)
35 Competition model of pheromone ratio detection (Zavada et al. 2011)
36 Computational Model of a Central Pattern Generator (Cataldo et al 2006)
37 Computational Surgery (Lytton et al. 2011)
38 Computational aspects of feedback in neural circuits (Maass et al 2006)
39 Computer model of clonazepam`s effect in thalamic slice (Lytton 1997)
40 Computing with neural synchrony (Brette 2012)
41 Contribution of ATP-sensitive potassium channels in the neuronal network (Huang et al. 2009)
42 Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009)
43 Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
44 Dentate gyrus network model (Santhakumar et al 2005)
45 Development of orientation-selective simple cell receptive fields (Rishikesh and Venkatesh, 2003)
46 Distributed representation of perceptual categories in the auditory cortex (Kim and Bao 2008)
47 Duration-tuned neurons from the inferior colliculus of the big brown bat (Aubie et al. 2009)
48 Duration-tuned neurons from the inferior colliculus of vertebrates (Aubie et al. 2012)
49 Dynamic dopamine modulation in the basal ganglia: Learning in Parkinson (Frank et al 2004,2005)
50 Efficient simulation environment for modeling large-scale cortical processing (Richert et al. 2011)
51 Electrically-coupled Retzius neurons (Vazquez et al. 2009)
52 Emergence of physiological oscillation frequencies in neocortex simulations (Neymotin et al. 2011)
53 Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
54 Engaging distinct oscillatory neocortical circuits (Vierling-Claassen et al. 2010)
55 Epilepsy may be caused by very small functional changes in ion channels (Thomas et al. 2009)
56 Epileptic seizure model with Morris-Lecar neurons (Beverlin and Netoff 2011)
57 Event-related simulation of neural processing in complex visual scenes (Mihalas et al. 2011)
58 Excitatory and inhibitory interactions in populations of model neurons (Wilson and Cowan 1972)
59 FRAT: An amygdala-centered model of fear conditioning (Krasne et al. 2011)
60 Failure of Deep Brain Stimulation in a basal ganglia neuronal network model (Dovzhenok et al. 2013)
61 Fast oscillations in inhibitory networks (Maex, De Schutter 2003)
62 Feedforward heteroassociative network with HH dynamics (Lytton 1998)
63 Fixed point attractor (Hasselmo et al 1995)
64 Formation of synfire chains (Jun and Jin 2007)
65 Fronto-parietal visuospatial WM model with HH cells (Edin et al 2007)
66 Functional consequences of cortical circuit abnormalities on gamma in schizophrenia (Spencer 2009)
67 Gamma and theta rythms in biophysical models of hippocampus circuits (Kopell et al. 2011)
68 Gamma oscillations in hippocampal interneuron networks (Bartos et al 2002)
69 Gamma oscillations in hippocampal interneuron networks (Wang, Buzsaki 1996)
70 Gap junction coupled network of striatal fast spiking interneurons (Hjorth et al. 2009)
71 Gap-junction coupled network activity depends on coupled dendrites diameter (Gansert et al. 2007)
72 Generating coherent patterns of activity from chaotic neural networks (Sussillo and Abbott 2009)
73 Generating oscillatory bursts from a network of regular spiking neurons (Shao et al. 2009)
74 Grid cell oscillatory interference with noisy network oscillators (Zilli and Hasselmo 2010)
75 Grid cell spatial firing models (Zilli 2012)
76 Half-center oscillator database of leech heart interneuron model (Doloc-Mihu & Calabrese 2011)
77 High dimensional dynamics and low dimensional readouts in neural microcircuits (Haeusler et al 2006)
78 High frequency oscillations in a hippocampal computational model (Stacey et al. 2009)
79 High frequency stimulation of the Subthalamic Nucleus (Rubin and Terman 2004)
80 Hippocampal basket cell gap junction network dynamics (Saraga et al. 2006)
81 Hippocampus temporo-septal engram shift model (Lytton 1999)
82 Homosynaptic plasticity in the tail withdrawal circuit (TWC) of Aplysia (Baxter and Byrne 2006)
83 Hopfield and Brody model (Hopfield, Brody 2000)
84 Hopfield and Brody model (Hopfield, Brody 2000) (NEURON+python)
85 Human Attentional Networks: A Connectionist Model (Wang and Fan 2007)
86 Human sleep/wake cycle (Rempe et al. 2010)
87 Huntington`s disease model (Gambazzi et al. 2010)
88 Hyperconnectivity, slow synapses in PFC mental retardation and autism model (Testa-Silva et al 2011)
89 I&F models of ACh modulation in the olfactory bulb and piriform cortex (de Almeida et al. 2012)
90 Inferior Olive, subthreshold oscillations (Torben-Nielsen, Segev, Yarom 2012)
91 Information-processing in lamina-specific cortical microcircuits (Haeusler and Maass 2006)
92 Inhibitory control by an integral feedback signal in prefrontal cortex (Miller and Wang 2006)
93 Investigation of different targets in deep brain stimulation for Parkinson`s (Pirini et al. 2009)
94 Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006)
95 JitCon: Just in time connectivity for large spiking networks (Lytton et al. 2008)
96 KInNeSS : a modular framework for computational neuroscience (Versace et al. 2008)
97 Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
98 Laminar analysis of excitatory circuits in vibrissal motor and sensory cortex (Hooks et al. 2011)
99 Laminar connectivity matrix simulation (Weiler et al 2008)
100 Large cortex model with map-based neurons (Rulkov et al 2004)
101 Large scale model of the olfactory bulb (Yu et al., 2013)
102 Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
103 Learning spatial transformations through STDP (Davison, Frégnac 2006)
104 Leech heart interneuron network model (Hill et al 2001, 2002)
105 Linking STDP and Dopamine action to solve the distal reward problem (Izhikevich 2007)
106 Lobster STG pyloric network model with calcium sensor (Gunay & Prinz 2010) (Prinz et al. 2004)
107 Loss of phase-locking in non-weakly coupled inhib. networks of type-I neurons (Oh and Matveev 2009)
108 MEG of Somatosensory Neocortex (Jones et al. 2007)
109 Maximum entropy model to predict spatiotemporal spike patterns (Marre et al. 2009)
110 Mean Field Equations for Two-Dimensional Integrate and Fire Models (Nicola and Campbell, 2013)
111 Mechanisms of very fast oscillations in axon networks coupled by gap junctions (Munro, Borgers 2010)
112 Medial reticular formation of the brainstem: anatomy and dynamics (Humphries et al. 2006, 2007)
113 Model of long range transmission of gamma oscillation (Murray 2007)
114 Modeling the effects of dopamine on network synchronization (Komek et al. 2012)
115 Modelling enteric neuron populations and muscle fed-state motor patterns (Chambers et al. 2011)
116 Modular grid cell responses as a basis for hippocampal remapping (Monaco and Abbott 2011)
117 Modulation of neuronal synchronization by D4 dopamine receptor-mediated phospholipid methylation
118 Modulation of septo-hippocampal theta activity by GABAA receptors (Hajos et al. 2004)
119 Multisensory integration in the superior colliculus: a neural network model (Ursino et al. 2009)
120 Multistability of clustered states in a globally inhibitory network (Chandrasekaran et al. 2009)
121 Na channel mutations in the dentate gyrus (Thomas et al. 2009)
122 Neocort. pyramidal cells subthreshold somatic voltage controls spike propagation (Munro Kopell 2012)
123 Network model of the granular layer of the cerebellar cortex (Maex, De Schutter 1998)
124 Network model with dynamic ion concentrations (Ullah et al. 2009)
125 Network model with neocortical architecture (Anderson et al. 2011 plus under review paper)
126 Network recruitment to coherent oscillations in a hippocampal model (Stacey et al. 2011)
127 Network topologies for producing limited sustained activation (Kaiser and Hilgetag 2010)
128 Networks of spiking neurons: a review of tools and strategies (Brette et al. 2007)
129 Neural model of frog ventilatory rhythmogenesis (Horcholle-Bossavit and Quenet 2009)
130 Neural modeling of an internal clock (Yamazaki and Tanaka 2008)
131 Neural transformations on spike timing information (Tripp and Eliasmith 2007)
132 Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012)
133 Numerical Integration of Izhikevich and HH model neurons (Stewart and Bair 2009)
134 Olfactory Bulb Network (Davison et al 2003)
135 Olfactory bulb cluster formation (Migliore et al. 2010)
136 Olfactory bulb mitral and granule cell column formation (Migliore et al. 2007)
137 Olfactory bulb mitral and granule cell: dendrodendritic microcircuits (Migliore and Shepherd 2008)
138 Olfactory bulb mitral cell gap junction NN model: burst firing and synchrony (O`Connor et al. 2012)
139 Olfactory bulb mitral cell: synchronization by gap junctions (Migliore et al 2005)
140 Olfactory bulb network model of gamma oscillations (Bathellier et al. 2006; Lagier et al. 2007)
141 Olfactory bulb network: neurogenetic restructuring and odor decorrelation (Chow et al. 2012)
142 Optimal deep brain stimulation of the subthalamic nucleus-a computational study (Feng et al. 2007)
143 Oscillations, phase-of-firing coding and STDP: an efficient learning scheme (Masquelier et al. 2009)
144 Parallel network simulations with NEURON (Migliore et al 2006)
145 Parametric computation and persistent gamma in a cortical model (Chambers et al. 2012)
146 Persistent synchronized bursting activity in cortical tissues (Golomb et al 2005)
147 Perturbation sensitivity implies high noise and suggests rate coding in cortex (London et al. 2010)
148 Phase oscillator models for lamprey central pattern generators (Varkonyi et al. 2008)
149 Phase precession through acceleration of local theta rhythm (Castro & Aguiar 2011)
150 Polychronization: Computation With Spikes (Izhikevich 2005)
151 Population models of temporal differentiation (Tripp and Eliasmith 2010)
152 Population-level model of the basal ganglia and action selection (Gurney et al 2001, 2004)
153 Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011)
154 Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012)
155 Rapid desynchronization of an electrically coupled Golgi cell network (Vervaeke et al. 2010)
156 Rate model of a cortical RS-FS-LTS network (Hayut et al. 2011)
157 Reconstrucing sleep dynamics with data assimilation (Sedigh-Sarvestani et al., 2012)
158 Regulation of a slow STG rhythm (Nadim et al 1998)
159 Reinforcement learning of targeted movement (Chadderdon et al. 2012)
160 Relative spike time coding and STDP-based orientation selectivity in V1 (Masquelier 2012)
161 Respiratory central pattern generator network in mammalian brainstem (Rubin et al. 2009)
162 Response properties of neocort. neurons to temporally modulated noisy inputs (Koendgen et al. 2008)
163 Reward modulated STDP (Legenstein et al. 2008)
164 Robust Reservoir Generation by Correlation-Based Learning (Yamazaki & Tanaka 2008)
165 S cell network (Moss et al 2005)
166 STDP promotes synchrony of inhibitory networks in the presence of heterogeneity (Talathi et al 2008)
167 Sensory feedback in an oscillatory interference model of place cell activity (Monaco et al. 2011)
168 Simulation studies on mechanisms of levetiracetam-mediated inhibition of IK(DR) (Huang et al. 2009)
169 Simulation system of spinal cord motor nuclei and assoc. nerves and muscles (Cisi and Kohn 2008)
170 Sleep-wake transitions in corticothalamic system (Bazhenov et al 2002)
171 Slow wave propagation in the guinea-pig gastric antrum (Hirst et al. 2006, Edwards and Hirst 2006)
172 Small world networks of Type I and Type II Excitable Neurons (Bogaard et al. 2009)
173 Software for teaching neurophysiology of neuronal circuits (Grisham et al. 2008)
174 Spike exchange methods for a Blue Gene/P supercomputer (Hines et al., 2011)
175 Spike-Timing-Based Computation in Sound Localization (Goodman and Brette 2010)
176 Spikes,synchrony,and attentive learning by laminar thalamocort. circuits (Grossberg & Versace 2007)
177 Spiking GridPlaceMap model (Pilly & Grossberg, PLoS One, 2013)
178 Spiking neuron model of the basal ganglia (Humphries et al 2006)
179 Stability of complex spike timing-dependent plasticity in cerebellar learning (Roberts 2007)
180 State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
181 Storing serial order in intrinsic excitability: a working memory model (Conde-Sousa & Aguiar 2013)
182 Striatal GABAergic microcircuit, dopamine-modulated cell assemblies (Humphries et al. 2009)
183 Striatal GABAergic microcircuit, spatial scales of dynamics (Humphries et al, 2010)
184 Studies of stimulus parameters for seizure disruption using NN simulations (Anderson et al. 2007)
185 Study of augmented Rubin and Terman 2004 deep brain stim. model in Parkinsons (Pascual et al. 2006)
186 Surround Suppression in V1 via Withdraw of Balanced Local Excitation in V1 (Shushruth 2012)
187 Synaptic information transfer in computer models of neocortical columns (Neymotin et al. 2010)
188 Synaptic plasticity can produce and enhance direction selectivity (Carver et al, 2008)
189 Synaptic scaling balances learning in a spiking model of neocortex (Rowan & Neymotin 2013)
190 Synchrony by synapse location (McTavish et al. 2012)
191 Temporal integration by stochastic recurrent network (Okamoto et al. 2007)
192 Thalamic Reticular Network (Destexhe et al 1994)
193 Thalamic quiescence of spike and wave seizures (Lytton et al 1997)
194 Thalamic transformation of pallidal input (Hadipour-Niktarash 2006)
195 Thalamocortical and Thalamic Reticular Network (Destexhe et al 1996)
196 Thalamocortical augmenting response (Bazhenov et al 1998)
197 The activity phase of postsynaptic neurons (Bose et al 2004)
198 Tonic-clonic transitions in a seizure simulation (Lytton and Omurtag 2007)
199 Towards a virtual C. elegans (Palyanov et al. 2012)
200 Translating network models to parallel hardware in NEURON (Hines and Carnevale 2008)
201 Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006)
202 Two-cell inhibitory network bursting dynamics captured in a one-dimensional map (Matveev et al 2007)
203 Updated Tritonia Swim CPG (Calin-Jagemann et al. 2007)
204 Virtual Retina: biological retina simulator, with contrast gain control (Wohrer and Kornprobst 2009)
205 Working memory circuit with branched dendrites (Morita 2008)


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