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Models that contain the Modeling Application : MATLAB (Home Page)

(MATLAB integrates mathematical computing, visualization, and a powerful language to provide a flexible environment for technical computing. The open architecture makes it easy to use MATLAB and its companion products to explore data, create algorithms, and create custom tools that provide early insights and competitive advantages. )

   Models
A Neural mass computational model of the Thalamocorticothalamic circuitry (Bhattacharya et al. 2011)
A detailed and fast model of extracellular recordings (Camunas-Mesa & Qurioga 2013)
A generic MAPK cascade model for random parameter sampling analysis (Mai and Liu 2013)
A kinetic model unifying presynaptic short-term facilitation and depression (Lee et al. 2009)
A microcircuit model of the frontal eye fields (Heinzle et al. 2007)
A multiphysics neuron model for cellular volume dynamics (Lee et al. 2011)
A neural model of Parkinson`s disease (Cutsuridis and Perantonis 2006, Cutsuridis 2006, 2007)
A simulation method for the firing sequences of motor units (Jiang et al 2006)
A spatially extended model for macroscopic spike-wave discharges (Taylor and Baier 2011)
A spiking model of cortical broadcast and competition (Shanahan 2008)
A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013)
Activity dependent changes in dendritic spine density and spine structure (Crook et al. 2007)
Ambiguous Encoding and Distorted Perception (Carlson and Kawasaki 2006)
Application of Parker-Sochacki method to Hodgkin-Huxley equations (Wilanowski 2013, in review)
Artificial neuron model (Izhikevich 2003)
Auditory nerve model for predicting performance limits (Heinz et al 2001)
Auditory nerve model with linear tuning (Heinz et al 2001)
Auditory nerve response model (Tan, Carney 2003)
Balance of excitation and inhibition (Carvalho and Buonomano 2009)
Basal ganglia-thalamic network model for deep brain stimulation (So et al. 2011)
Basal ganglia-thalamocortical loop model of action selection (Humphries and Gurney 2002)
Breakdown of accmmodation in nerve: a possible role for INAp (Hennings et al 2005)
CA1 pyramidal neuron dendritic spine with plasticity (O`Donnell et al. 2011)
CA1 pyramidal: Stochastic amplification of KCa in Ca2+ microdomains (Stanley et al. 2011)
CA3 Radiatum/Lacunosum-Moleculare interneuron, Ih (Anderson et al. 2011)
CONFIGR: a vision-based model for long-range figure completion (Carpenter et al. 2007)
Calyx of Held, short term plasticity (Yang Z et al. 2009)
Cancelling redundant input in ELL pyramidal cells (Bol et al. 2011)
Combination sensitivity and active conductances (Carlson and Kawasaki 2006)
Competing oscillator 5-cell circuit and Parameterscape plotting (Gutierrez et al. 2013)
Composite spiking network/neural field model of Parkinsons (Kerr et al 2013)
Continuous time stochastic model for neurite branching (van Elburg 2011)
Continuum model of tubulin-driven neurite elongation (Graham et al 2006)
Dendritic Na inactivation drives a decrease in ISI (Fernandez et al 2005)
Dipole Localization Kit (Mechler & Victor, 2012)
Direct recruitment of S1 interneurons via ICMS (Overstreet and Helms Tillery, submitted)
Direct recruitment of S1 pyramidal neurons via ICMS (Overstreet et al., submitted)
Distributed representation of perceptual categories in the auditory cortex (Kim and Bao 2008)
Distributed synaptic plasticity and spike timing (Garrido et al. 2013)
Dopamine-modulated medium spiny neuron, reduced model (Humphries et al. 2009)
Effects of the membrane AHP on the Lateral Superior Olive (LSO) (Zhou & Colburn 2010)
Elementary mechanisms producing facilitation of Cav2.1 (P/Q-type) channels
Epileptic seizure model with Morris-Lecar neurons (Beverlin and Netoff 2011)
Extracellular Action Potential Simulations (Gold et al 2007)
Extraction and classification of three cortical neuron types (Mensi et al. 2011)
FRAT: An amygdala-centered model of fear conditioning (Krasne et al. 2011)
Failure of Deep Brain Stimulation in a basal ganglia neuronal network model (Dovzhenok et al. 2013)
Fisher and Shannon information in finite neural populations (Yarrow et al. 2012)
Gap junction coupled network of striatal fast spiking interneurons (Hjorth et al. 2009)
Generic Bi-directional Real-time Neural Interface (Zrenner et al. 2010)
Grid cell oscillatory interference with noisy network oscillators (Zilli and Hasselmo 2010)
Grid cell spatial firing models (Zilli 2012)
Homeostatic synaptic plasticity (Rabinowitch and Segev 2006a,b)
Hyperconnectivity, slow synapses in PFC mental retardation and autism model (Testa-Silva et al 2011)
I&F models of ACh modulation in the olfactory bulb and piriform cortex (de Almeida et al. 2012)
IA and IT interact to set first spike latency (Molineux et al 2005)
INa and IKv4.3 heterogeneity in canine LV myocytes (Flaim et al 2006)
Impact of dendritic size and topology on pyramidal cell burst firing (van Elburg and van Ooyen 2010)
Inferring connection proximity in electrically coupled networks (Cali et al. 2007)
Inhibitory plasticity balances excitation and inhibition (Vogels et al. 2011)
Inner hair cell auditory nerve synapse model (Deligeorges, Mountain 1997)
Investigation of different targets in deep brain stimulation for Parkinson`s (Pirini et al. 2009)
Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006)
LGMD Variability and logarithmic compression in dendrites (Jones and Gabbiani, 2012, 2012B)
Laminar analysis of excitatory circuits in vibrissal motor and sensory cortex (Hooks et al. 2011)
Laminar connectivity matrix simulation (Weiler et al 2008)
Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Leaky integrate-and-fire model of spike frequency adaptation in the LGMD (Gabbiani and Krapp 2006)
Linking STDP and Dopamine action to solve the distal reward problem (Izhikevich 2007)
Markov Chain-based Stochastic Shielding Hodgkin Huxley Model (Schmandt, Galan 2012)
Mathematical model for windup (Aguiar et al. 2010)
Maximum entropy model to predict spatiotemporal spike patterns (Marre et al. 2009)
Mean Field Equations for Two-Dimensional Integrate and Fire Models (Nicola and Campbell, 2013)
Mechanisms of magnetic stimulation of central nervous system neurons (Pashut et al. 2011)
Medial reticular formation of the brainstem: anatomy and dynamics (Humphries et al. 2006, 2007)
Model of calcium oscillations in olfactory cilia (Reidl et al. 2006)
Model of cochlear membrane adapted (Peterson, Bogert 1950)
Model of long range transmission of gamma oscillation (Murray 2007)
Modelling enteric neuron populations and muscle fed-state motor patterns (Chambers et al. 2011)
Motoneuron model of self-sustained firing after spinal cord injury (Kurian et al. 2011)
Motoneuron simulations for counting motor units (Major and Jones 2005)
Multiple mechanisms of short term plasticity at the calyx of Held (Hennig et al. 2008)
Multiple modes of inner hair cell stimulation (Mountain, Cody 1999)
Multisensory integration in the superior colliculus: a neural network model (Ursino et al. 2009)
Neocort. pyramidal cells subthreshold somatic voltage controls spike propagation (Munro Kopell 2012)
Neural model of frog ventilatory rhythmogenesis (Horcholle-Bossavit and Quenet 2009)
Neural transformations on spike timing information (Tripp and Eliasmith 2007)
Numerical Integration of Izhikevich and HH model neurons (Stewart and Bair 2009)
Odor supported place cell model and goal navigation in rodents (Kulvicius et al. 2008)
Olfactory bulb network: neurogenetic restructuring and odor decorrelation (Chow et al. 2012)
Olfactory receptor neuron model (Dougherty et al 2005)
Opponent-channel model of the cortical representation of auditory space (Briley et al., 2012)
Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
Oscillation and coding in a proposed NN model of insect olfaction (Horcholle-Bossavit et al. 2007)
Oversampling method to extract excitatory and inhibitory conductances (Bedard et al. 2012)
Parameter estimation for Hodgkin-Huxley based models of cortical neurons (Lepora et al. 2011)
Phase oscillator models for lamprey central pattern generators (Varkonyi et al. 2008)
Phase precession through acceleration of local theta rhythm (Castro & Aguiar 2011)
Pipette and membrane patch geometry effects on GABAa currents patch-clamp exps (Moroni et al. 2011)
Point process framework for modeling electrical stimulation of auditory nerve (Goldwyn et al. 2012)
Population-level model of the basal ganglia and action selection (Gurney et al 2001, 2004)
Prob. Inference of Short-Term Synaptic Plasticity in Neocort. Microcircuits (Costa et al. 2013)
Pyramidal neurons: IKHT offsets activation of IKLT to increase gain (Fernandez et al 2005)
Reconstrucing sleep dynamics with data assimilation (Sedigh-Sarvestani et al., 2012)
Reconstructing cerebellar granule layer evoked LFP using convolution (ReConv) (Diwakar et al. 2011)
Reflected SDE Hodgkin-Huxley Model (Dangerfield et al. 2012)
Relative spike time coding and STDP-based orientation selectivity in V1 (Masquelier 2012)
Reliability of Morris-Lecar neurons with added T, h, and AHP currents (Zeldenrust et al. 2013)
Response properties of neocort. neurons to temporally modulated noisy inputs (Koendgen et al. 2008)
Reverse-time correlation analysis for idealized orientation tuning dynamics (Kovacic et al. 2008)
STDP allows fast rate-modulated coding with Poisson-like spike trains (Gilson et al. 2011)
Self-influencing synaptic plasticity (Tamosiunaite et al. 2007)
Simple and accurate Diffusion Approximation algorithm for stochastic ion channels
Slow wave propagation in the guinea-pig gastric antrum (Hirst et al. 2006, Edwards and Hirst 2006)
Spectral method and high-order finite differences for nonlinear cable (Omurtag and Lytton 2010)
Spike Response Model simulator (Jolivet et al. 2004, 2006, 2008)
Spike frequency adaptation in the LGMD (Peron and Gabbiani 2009)
Spike timing detection in different forms of LTD (Doi et al 2005)
Spiking GridPlaceMap model (Pilly & Grossberg, PLoS One, 2013)
Spiking neuron model of the basal ganglia (Humphries et al 2006)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Stochastic versions of the Hodgkin-Huxley equations (Goldwyn, Shea-Brown 2011)
Striatal GABAergic microcircuit, dopamine-modulated cell assemblies (Humphries et al. 2009)
Striatal GABAergic microcircuit, spatial scales of dynamics (Humphries et al, 2010)
Surround Suppression in V1 via Withdraw of Balanced Local Excitation in V1 (Shushruth 2012)
Sympathetic neuron (Wheeler et al 2004)
Synaptic plasticity can produce and enhance direction selectivity (Carver et al, 2008)
Synthesis of spatial tuning functions from theta cell spike trains (Welday et al., 2011)
Systems-level modeling of neuronal circuits for leech swimming (Zheng et al. 2007)
TTX-R Na+ current effect on cell response (Herzog et al 2001) (MATLAB)
Temporal and spatial characteristics of vibrissa responses to motor commands (Simony et al. 2010)
Thalamic transformation of pallidal input (Hadipour-Niktarash 2006)
The activity phase of postsynaptic neurons (Bose et al 2004)
Theta phase precession in a model CA3 place cell (Baker and Olds 2007)
Vesicular pool simulations of synaptic depression (Aristizabal and Glavinovic 2004)
Working memory circuit with branched dendrites (Morita 2008)


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