| 1 |
Andreev VP (2013) Cytoplasmic electric fields and electroosmosis: possible solution for the paradoxes of the intracellular transport of biomolecules PLoS One 8(4):e61884
| submitted materials |
| 2 |
Brunner J, Ster J, Van-Weert S, Andrasi T, Neubrandt M, Corti C, Corsi M, Ferraguti F, Gerber (2013) Selective Silencing of Individual Dendritic Branches by an mGlu2-Activated Potassium Conductance in Dentate Gyrus Granule Cells. J Neurosci 33:7285-98 [PubMed]
| obtained materials |
| 3 |
Chiu CQ, Lur G, Morse TM, Carnevale NT, Ellis-Davies G, Higley MJ (2013) Compartmentalization of GABAergic inhibition by dendritic spines Science 340:759-762
| submitted materials |
| 4 |
Conde-Sousa E, Aguiar P (2013) A working memory model for serial order that stores
information in the intrinsic excitability properties of neurons J Comp Neurosci [PubMed]
| submitted materials |
| 5 |
Costa RP, Sjöström PJ, van Rossum MC (2013) Probabilistic Inference of Short-Term Synaptic Plasticity in Neocortical Microcircuits Front. Comput. Neurosci.
| submitted materials |
| 6 |
Ellis M, Chambers JD, Gwynne RM, Bornstein JC (2013) Serotonin (5-HT) and cholecystokinin (CCK) mediate nutrient induced segmentation in guinea pig small intestine. Am J Physiol Gastrointest Liver Physiol [PubMed]
| obtained materials |
| 7 |
Ferrante M, Migliore M, Ascoli GA (2013) Functional Impact of Dendritic Branch-Point Morphology
J. Neurosci. 33:2156-2165
| submitted materials |
| 8 |
Garrido JA, Ros E, D`Angelo E (2013) Spike timing regulation on the millisecond scale by distributed synaptic plasticity at the cerebellum input stage: a simulation study
Front. Comput. Neurosci.
| submitted materials |
| 9 |
Hay E, Schurmann F, Markram H, Segev I (2013) Preserving Axo-somatic Spiking Features Despite Diverse Dendritic Morphology. J Neurophysiol [PubMed]
| submitted materials |
| 10 |
Hituri K, Linne ML (2013) Comparison of Models for IP3 Receptor Kinetics Using Stochastic Simulations. PLoS One 8:e59618 [PubMed]
| submitted materials |
| 11 |
Kerr CC, Van Albada SJ, Neymotin SA, Chadderdon GL, Robinson PA, Lytton WW (2013) Cortical information flow in Parkinson's disease: a composite network-field model. Front Comput Neurosci [PubMed]
| submitted materials |
| 12 |
Li X, Morita K, Robinson HP, Small M (2013) Control of layer 5 pyramidal cell spiking by oscillatory inhibition in the distal apical dendrites: a computational modelling study. J Neurophysiol 109(11):2739-2756 [PubMed]
| obtained materials |
| 13 |
Mai Z, Liu H (2013) Random parameter sampling of a generic three-tier MAPK cascade model reveals major factors affecting its versatile dynamics PLoS ONE 8(1):e54441
| submitted materials |
| 14 |
Nicola W, Campbell SA (2013) Bifurcations of large networks of two-dimensional integrate and fire neurons. J Comput Neurosci [PubMed]
| submitted materials |
| 15 |
Ovsepian SV, Steuber V, Le Berre M, O A defined heteromeric KV1 channel stabilizes the intrinsic pacemaking and regulates the output of deep cerebellar nuclear neurons to thalamic targets. J Physiol 591:1771-91 [PubMed]
| submitted materials |
| 16 |
Parekh R, Ascoli GA (2013) Neuronal morphology goes digital: a research hub for cellular and system neuroscience. Neuron 77:1017-38 [PubMed]
| mentions |
| 17 |
Pilly PK, Grossberg S (2013) Spiking neurons in a hierarchical self-organizing map model can learn to develop spatial and temporal properties of entorhinal grid cells and hippocampal place cells PLOS One 8(4):e60599
| submitted materials |
| 18 |
Rowan MS,Neymotin SA (2013) Synaptic Scaling Balances Learning in a Spiking Model of Neocortex Lect. Notes in Comp. Sci., Proc. of the 11th Intern. Conf. on Adaptive and Natural Computing Algor.
| submitted materials |
| 19 |
Stiefel KM, Englitz B, Sejnowski TJ (2013) Origin of intrinsic irregular firing in cortical interneurons. Proc Natl Acad Sci U S A 110:7886-91 [PubMed]
| submitted materials |
| 20 |
Thomas EA, Petrou S (2013) Network-specific mechanisms may explain the paradoxical effects of carbamazepine and phenytoin. Epilepsia [PubMed]
| both |
| 21 |
Waltemath D, Henkel R, Halke R, Scharm M, Wolkenhauer O (2013) Improving the reuse of computational models through version control. Bioinformatics [PubMed]
| mentions |
| 22 |
Amatrudo JM, Weaver CM, Crimins JL, Hof PR, Rosene DL, Luebke JI (2012) Influence of highly distinctive structural properties on the excitability of pyramidal neurons in monkey visual and prefrontal cortices J. Neurosci,
| submitted materials |
| 23 |
Antunes G, De Schutter E (2012) A stochastic signaling network mediates the probabilistic induction of cerebellar long-term depression J. Neurosci. 32:9288-9300 [PubMed]
| submitted materials |
| 24 |
Bahl A, Stemmler MB, Herz AV, Roth A (2012) Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data. J Neurosci Methods 210:22-34 [PubMed]
| both |
| 25 |
Bedard C, Behuret S, Deleuze C, Bal T, Destexhe A (2012) Oversampling method to extract excitatory and inhibitory conductances from single-trial membrane potential recordings Journal of Neuroscience Methods 210(1):3-14 [PubMed]
| submitted materials |
| 26 |
Berzhanskaya J, Chernyy N, Gluckman BJ, Schiff SJ, Ascoli GA (2012) Modulation of hippocampal rhythms by subthreshold electric fields and network topology. J Comput Neurosci [PubMed]
| both |
| 27 |
Bianchi D, Marasco A, Limongiello A, Marchetti C, Marie H, Tirozzi B, Migliore M (2012) On the mechanisms underlying the depolarization block in the spiking dynamics of CA1 pyramidal neurons J Comput. Neurosci.
| both |
| 28 |
Birdno MJ, Kuncel AM, Dorval AD, Turner DA, Gross RE, Grill WM (2012) Stimulus features underlying reduced tremor suppression with temporally patterned deep brain stimulation. J Neurophysiol 107:364-83 [PubMed]
| submitted materials |
| 29 |
Boucher PA, Joós B, Morris CE (2012) Coupled left-shift of Nav channels: modeling the Na(+)-loading and dysfunctional excitability of damaged axons J Comput Neurosci. [PubMed]
| submitted materials |
| 30 |
Briley PM, Kitterick PT, Summerfield AQ (2012) Evidence for opponent-process analysis of sound-source location in humans Journal of the Association for Research in Otolaryngology epub:1-19 [PubMed]
| submitted materials |
| 31 |
Carter ME, Brill J, Bonnavion P, Huguenard JR, Huerta R, de Lecea, L (2012) Mechanism for Hypocretin-mediated sleep-to-wake transitions PNAS
| submitted materials |
| 32 |
Chadderdon GL, Neymotin SA, Kerr CC, Lytton WW (2012) Reinforcement learning of targeted movement in a spiking neuronal model of motor cortex PLoS ONE 2012 7(10):e47251
| submitted materials |
| 33 |
Chambers JD, Bethwaite B, Diamond NT, Peachey T, Abramson D, Petrou S, Thomas EA (2012) Parametric computation predicts a multiplicative interaction between synaptic strength parameters that control gamma oscillations.
6:53. Epub 2012 Jul 24. Front Comput Neurosci. 6:53:1-12 [PubMed]
| both |
| 34 |
Culmone V, Migliore M (2012) Progressive effect of beta amyloid peptides accumulation on CA1 pyramidal neurons: a model study suggesting possible treatments Front Comput Neurosci [PubMed]
| both |
| 35 |
Evans RC, Morera-Herreras T, Cui Y, Du K, Sheehan T, Kotaleski JH, Venance L, Blackwell KT (2012) The effects of NMDA subunit composition on calcium influx and spike timing-dependent plasticity in striatal medium spiny neurons. PLoS Comput Biol 8:e1002493 [PubMed]
| submitted materials |
| 36 |
Fineberg JD, Ritter DM, Covarrubias M (2012) Modeling-independent elucidation of inactivation pathways in recombinant and native A-type Kv channels J Gen Physiol 140:513-527
| submitted materials |
| 37 |
Foutz TJ, Arlow RL, McIntyre CC (2012) Theoretical principles underlying optical stimulation of a channelrhodopsin-2 positive pyramidal neuron J Neurophysiol., Epub ahead of print 107:3235-45 [PubMed]
| obtained materials |
| 38 |
Goldwyn JH, Rubinstein JT, Shea-Brown E (2012) A point process framework for modeling electrical stimulation of the auditory nerve J Neurophysiol 108:1430-1452 [PubMed]
| submitted materials |
| 39 |
Gulledge AT, Carnevale NT, Stuart GJ (2012) Electrical advantages of dendritic spines
PLoS One. 7(4):e36007 [PubMed]
| obtained materials |
| 40 |
Jones PW, Gabbiani F (2012) Impact of Neural Noise on a Sensory-Motor Pathway Signaling Impending Collision. J Neurophysiol 107:1067-1079 [PubMed]
| submitted materials |
| 41 |
Jones PW, Gabbiani F (2012) Logarithmic Compression of Sensory Signals within the Dendritic Tree of a Collision-Sensitive Neuron J Neurosci 32(14):4923-4934
| submitted materials |
| 42 |
Kerr CC, Neymotin SA, Chadderdon GL, Fietkiewicz CT, Francis JT, Lytton WW (2012) Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex IEEE Transactions on Neural Systems & Rehabilitation Engineering 20(2):153-60 [PubMed]
| submitted materials |
| 43 |
Kim JK, Forger DB (2012) A mechanism for robust circadian timekeeping via balanced stoichiometry Molecular Systems Biology 8:630:1-14 [PubMed]
| submitted materials |
| 44 |
Lewin N, Aksay E, Clancy CE (2012) Computational Modeling Reveals Dendritic Origins of GABA(A)-Mediated Excitation in CA1 Pyramidal Neurons. PLoS One 7:e47250 [PubMed]
| submitted materials |
| 45 |
Marasco A, Limongiello A, Migliore M (2012) Fast and accurate low-dimensional reduction of biophysically detailed neuron models Scientific Reports 2:928:1-7 [PubMed]
| submitted materials |
| 46 |
Masquelier T (2012) Relative spike time coding and STDP-based orientation selectivity in the early visual system in natural continuous and saccadic vision: a computational model
J Comput Neurosci 32(3):425-41 [PubMed]
| submitted materials |
| 47 |
McTavish TS, Migliore M, Shepherd GM, Hines ML (2012) Mitral cell spike synchrony modulated by dendrodendritic synapse location
Frontiers in Computational Neuroscience 6:3
| submitted materials |
| 48 |
Mechler F, Victor JD (2012) Dipole characterization of single neurons from their extracellular action potentials. J Comput Neurosci 32:73-100 [PubMed]
| submitted materials |
| 49 |
Moradi K, Moradi K, Ganjkhani M, Hajihasani M, Gharibzadeh S, Kaka G (2012) A fast model of voltage-dependent NMDA receptors J Comput Neurosci [PubMed]
| submitted materials |
| 50 |
Munro E, Kopell N (2012) Subthreshold somatic voltage in neocortical pyramidal cells can control whether spikes propagate from the axonal plexus to axon terminals: a model study J. Neurophysiol.
| submitted materials |
| 51 |
O`Connor S, Angelo K, Jacob TJC (2012) Burst firing versus synchrony in a gap junction connected olfactory bulb mitral cell network
model. 6:75. Frontiers in Computational Neuroscience 6:75:1-18
| obtained materials |
| 52 |
Orio P, Parra A, Madrid R, Gonzalez O, Belmonte C, Viana F (2012) Role of Ih in the firing pattern of mammalian cold thermoreceptor endings J Neurophysiol [PubMed]
| submitted materials |
| 53 |
Orio P, Soudry D (2012) Simple, fast and accurate implementation of the diffusion approximation algorithm for stochastic ion channels with multiple States
PLoS One 7(5):e36670 [PubMed]
| submitted materials |
| 54 |
Popovic MA, Gao X, Carnevale NT, Zecevic D (2012) Cortical Dendritic Spine Heads Are Not Electrically Isolated by the Spine Neck from Membrane Potential Signals in Parent Dendrites. Cereb Cortex [PubMed]
| submitted materials |
| 55 |
Powers BE, Lasiene J, Plemel JR, Shupe L, Perlmutter SI, Tetzlaff W, Horner PJ (2012) Axonal Thinning and Extensive Remyelination without Chronic Demyelination in Spinal Injured Rats
J. Neurosci. 32(15):5120-5125
| obtained materials |
| 56 |
Schmandt N, Galan RF (2012) Stochastic-shielding approximation of Markov chains and its application to efficiently simulate random ion-channel gating Phys Rev Lett 109:118101 [PubMed]
| submitted materials |
| 57 |
Sedigh-Sarvestani M, Schiff S, Gluckman B (2012) Reconstructing Mammalian Sleep Dynamics with Data Assimiliation PLoS Comp Biol 8(11):e1002788 [PubMed]
| submitted materials |
| 58 |
Shushruth S, Mangapathy P, Ichida JM, Bressloff PC, Schwabe L, Angelucci A (2012) Strong recurrent networks compute the orientation tuning of surround modulation in the primate primary visual cortex. J Neurosci 32:308-21 [PubMed]
| submitted materials |
| 59 |
Sidiropoulou K, Poirazi P (2012) Predictive Features of Persistent Activity Emergence in Regular Spiking and Intrinsic Bursting Model Neurons Plos Computational Biology 8(4):e1002489 [PubMed]
| submitted materials |
| 60 |
Song W, Xiao Y, Chen H, Ashpole NM, Piekarz AD, Ma P, Hudmon A, Cummins TR, Shou W (2012) The human Nav1.5 F1486 deletion associated with long QT syndrome leads to impaired sodium channel inactivation and reduced lidocaine sensitivity. J Physiol [PubMed]
| obtained materials |
| 61 |
Sterratt DC, Groen MR, Meredith RM, van Ooyen A (2012) Spine calcium transients induced by synaptically-evoked action potentials can predict synapse location and establish synaptic democracy PLoS Comput Biol 8(6):e1002545 [PubMed]
| submitted materials |
| 62 |
Torben-Nielsen B, Segev I, Yarom Y (2012) The generation of phase differences and frequency changes in a network model of inferior olive subthreshold oscillations. PLoS Comput Biol 8:e1002580 [PubMed]
| submitted materials |
| 63 |
Varela JA, Wang J, Christianson JP, Maier SF, Cooper DC (2012) Control over Stress, But Not Stress Per Se Increases Prefrontal Cortical Pyramidal Neuron Excitability The Journal of Neuroscience 32(37):12848-12853
| obtained materials |
| 64 |
Yarrow S, Challis E, Series P (2012) Fisher and Shannon information in finite neural populations.
Neural Computation 24:1740-80 [PubMed]
| submitted materials |
| 65 |
Zilli EA (2012) Models of grid cell spatial firing published 2005-2011. Front Neural Circuits 6:16 [PubMed]
| submitted materials |
| 66 |
de Almeida LB, Idiart MA, Linster C (2012) A model of cholinergic modulation in olfactory bulb and piriform cortex. J Neurophysiol [PubMed]
| submitted materials |
| 67 |
de Kamps M (2012) Towards truly human-level intelligence in artificial applications Cognitive Systems Research 14(1):1-9
| mentions |
| 68 |
Anderson WD, Galván EJ, Mauna JC, Thiels E, Barrionuevo G (2011) Properties and functional implications of Ih in hippocampal area CA3 interneurons
Pflugers Archives, submitted [PubMed]
| submitted materials |
| 69 |
Beverlin B, Kakalios J, Nykamp D, Netoff TI (2011) Dynamical changes in neurons during seizures determine tonic to clonic shift. J Comput Neurosci [PubMed]
| submitted materials |
| 70 |
Bol K, Marsat G, Harvey-Girard E, Longtin A, Maler L (2011) Frequency-Tuned Cerebellar Channels and Burst-Induced LTD Lead to the Cancellation of Redundant Sensory Inputs. J Neurosci 31:11028-38 [PubMed]
| submitted materials |
| 71 |
Brown SA, Moraru II, Schaff JC, Loew LM (2011) Virtual NEURON: a strategy for merged biochemical and electrophysiological modeling. J Comput Neurosci [PubMed]
| submitted materials |
| 72 |
Casale AE, McCormick DA (2011) Active action potential propagation but not initiation in thalamic interneuron dendrites. J Neurosci 31:18289-302 [PubMed]
| submitted materials |
| 73 |
Case M, Soltesz I (2011) Computational modeling of epilepsy. Epilepsia 52 Suppl 8:12-5 [PubMed]
| mentions |
| 74 |
Castro L, Aguiar P (2011) Phase precession through acceleration of local theta rhythm: a
biophysical model for the interaction between place cells and local
inhibitory neurons
J Comput Neurosci. [PubMed]
| submitted materials |
| 75 |
Chambers JD, Bornstein JC, Thomas EA (2011) Multiple Neural Oscillators and Muscle Feedback Are Required for the Intestinal Fed State Motor Program PLoS ONE 6(5):e119597-.
| submitted materials |
| 76 |
Diwakar S, Lombardo P, Solinas S, Naldi G, D`Angelo E (2011) Local field potential modeling predicts dense activation in cerebellar granule cells
clusters under LTP and LTD control PLoS ONE 6(7):e21928
| submitted materials |
| 77 |
Doloc-Mihu A, Calabrese RL (2011) A database of computational models of a half-center oscillator for analyzing how neuronal parameters influence network activity J Biol Phys. 37(3):263-83 [PubMed]
| mentions |
| 78 |
Doyon N, Prescott SA, Castonguay A, Godin AG, Kroger H, De Koninck Y (2011) Efficacy of synaptic inhibition depends on multiple, dynamically interacting mechanisms implicated in chloride homeostasis. PLoS Comput Biol 7:e1002149-9 [PubMed]
| submitted materials |
| 79 |
Edgerton JR, Jaeger D (2011) Dendritic Sodium Channels Promote Active Decorrelation and Reduce Phase
Locking to Parkinsonian Input Oscillations in Model Globus Pallidus Neurons
J. Neurosci. 31:10919-10936
| submitted materials |
| 80 |
Fietkiewicz C, Loparo KA, Wilson CG (2011) Drive latencies in hypoglossal motoneurons indicate developmental change in the brainstem respiratory network. J Neural Eng 8:065011 [PubMed]
| submitted materials |
| 81 |
Foust AJ, Yu Y, Popovic M, Zecevic D, McCormick DA (2011) Somatic membrane potential and Kv1 channels control
spike repolarization in cortical axon collaterals and presynaptic boutons The Journal of Neuroscience 31(43):15490-15498 [PubMed]
| submitted materials |
| 82 |
Fujita T, Fukai T, Kitano K (2011) Influences of membrane properties on phase response curve and synchronization stability in a model globus pallidus neuron. [epub ahead of print] J Comput Neurosci [PubMed]
| submitted materials |
| 83 |
Gilson M, Masquelier T, Hugues E (2011) STDP Allows Fast Rate-Modulated Coding with Poisson-Like Spike Trains PLoS Comput Biol 7(10):e1002231
| submitted materials |
| 84 |
Halfmann K, Crisp K (2011) A Kinematic Study of Pulsation in the Dorsal Blood Vessel of the blackworm, Lumbriculus variegatus
IMPULSE-An Undergraduate Journal for Neuroscience :1-10
| submitted materials |
| 85 |
Halnes G, Augustinaite S, Heggelund P, Einevoll GT, Migliore M (2011) A Multi-Compartment Model for Interneurons in the Dorsal Lateral Geniculate Nucleus
PLoS Comp. Biol. 7(9):e1002160 [PubMed]
| submitted materials |
| 86 |
Hay E, Hill S, Schurmann F, Markram H, Segev I (2011) Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS Comput Biol 7:e1002107 [PubMed]
| submitted materials |
| 87 |
Hendrickson EB, Edgerton JR, Jaeger D (2011) The capabilities and limitations of
conductance-based compartmental neuron models with reduced branched or
unbranched morphologies and active dendrites. J. Comp. Neurosci. 30(2):301-321 [PubMed]
| submitted materials |
| 88 |
Hendrickson EB, Edgerton JR, Jaeger D (2011) The use of automated parameter searches to improve ion channel kinetics for neural modeling. J Comput Neurosci [PubMed]
| submitted materials |
| 89 |
Hines M, Kumar S, Schuermann F (2011) Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer.
Frontiers in Computational Neuroscience 5:49
| submitted materials |
| 90 |
Jaffe DB, Wang B, Brenner R (2011) Shaping of action potentials by type I and type II large-conductance Ca(2+)-activated K(+) channels. Neuroscience [PubMed]
| submitted materials |
| 91 |
Jedlicka P, Deller T, Gutkin BS, Backus KH (2011) Activity-dependent intracellular chloride accumulation and diffusion controls GABA(A) receptor-mediated synaptic transmission. Hippocampus 21:885-98 [PubMed]
| obtained materials |
| 92 |
Kannon T, Inagaki K, Kamiji NL, Makimura K, Usui S (2011) PLATO: data-oriented approach to collaborative large-scale brain system modeling. Neural Netw 24:918-26 [PubMed]
| mentions |
| 93 |
Katona G, Kaszas A, Turi GF, Hajos N, Tamas G, Vizi ES, Rozsa B (2011) Roller Coaster Scanning reveals spontaneous triggering of dendritic spikes in CA1 interneurons. Proc Natl Acad Sci U S A 108:2148-53 [PubMed]
| submitted materials |
| 94 |
Klaus A, Planert H, Hjorth J, Berke JD, Silberberg G, Kotaleski JH (2011) Striatal fast-spiking interneurons: from firing
patterns to postsynaptic impact Front. Syst. Neurosci.
| submitted materials |
| 95 |
Kopp-Scheinpflug C, Tozer AJB, Robinson SW,Tempel BL, Hennig MH, Forsythe ID (2011) The Sound of Silence: ionic mechanisms encoding sound termination Neuron 71(5):911-925
| submitted materials |
| 96 |
Kubota Y,Karube F, Nomura M, Gulledge AT, Mochizuki A, Schertel A, Kawaguchi Y (2011) Conserved properties of dendritic trees in
four cortical interneuron subtypes
Scientific Reports 1(89):1-13
| submitted materials |
| 97 |
Li X, Morita K, Robinson HP, Small M (2011) Impact of gamma-oscillatory inhibition on the signal transmission of a cortical pyramidal neuron. Cogn Neurodyn 5:241-51 [PubMed]
| obtained materials |
| 98 |
Linaro D, Storace M, Giugliano M (2011) Accurate and fast simulation of channel noise in conductance-based model neurons by diffusion approximation PLOS 7:e1001102 [PubMed]
| submitted materials |
| 99 |
Luthman J, Hoebeek FE, Maex R, Davey N, Adams R, De Zeeuw CI, Steuber V (2011) STD-dependent and independent encoding of input irregularity as spike rate in a computational model of a cerebellar nucleus neuron Cerebellum 10(4):667-82 [PubMed]
| both |
| 100 |
Lytton WW, Neymotin SA, Wester JC, Contreras D (2011) Neocortical simulation for epilepsy surgery guidance: Localization and intervention Computational Surgery and Dual Training
| submitted materials |
| 101 |
Mensi S, Naud R, Pozzorini C, Avermann M, Petersen CC, Gerstner W (2011) Parameter Extraction and Classification of Three Cortical Neuron Types Reveals Two Distinct Adaptation Mechanisms. J Neurophysiol (epub before print) [PubMed]
| both |
| 102 |
Migliore M, De Blasi I, Tegolo D, Migliore R (2011) A modeling study suggesting how a reduction in the context-dependent input on CA1 pyramidal neurons could generate schizophrenic behavior. Neural Netw [PubMed]
| submitted materials |
| 103 |
Monaco JD, Knierim JJ, Zhang K (2011) Sensory feedback, error correction, and remapping in a multiple oscillator model of place cell activity Frontiers in Computational Neuroscience 5(0):39
| submitted materials |
| 104 |
Moroni M, Biro I, Giugliano M, Vijayan R, Biggin PC, Beato M, Sivilotti LG (2011) Chloride Ions in the Pore of Glycine and GABA Channels Shape the Time Course and Voltage Dependence of Agonist Currents
J Neuroscience 31(40):14095-14106
| submitted materials |
| 105 |
Muller L, Brette R, Gutkin B (2011) Spike-Timing Dependent Plasticity and Feed-Forward Input Oscillations Produce Precise and Invariant Spike Phase-Locking. Front Comput Neurosci 5:45 [PubMed]
| submitted materials |
| 106 |
Neymotin SA, Lazarewicz MT, Sherif M, Contreras D, Finkel LH, Lytton WW (2011) Ketamine disrupts theta modulation of gamma in a computer model of hippocampus Journal of Neuroscience 31(32):11733-11743 [PubMed]
| submitted materials |
| 107 |
Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW (2011) Emergence of physiological oscillation frequencies in a computer model of neocortex. Front Comput Neurosci 5:19-75 [PubMed]
| submitted materials |
| 108 |
Neymotin SA, Lytton WW, Olypher AO, Fenton AA (2011) Measuring the quality of neuronal identification in ensemble recordings
Journal of Neuroscience 31(45):16398-16409 [PubMed]
| submitted materials |
| 109 |
Nickerson DP, Terkildsen JR, Hamilton KL, Hunter PJ (2011) A tool for multi-scale modelling of the renal nephron
Interface Focus
| mentions |
| 110 |
O`Donnell C, Nolan MF, van Rossum MCW (2011) Dendritic spine dynamics regulate the long-term stability of synaptic plasticity. J Neurosci 31:16142-56 [PubMed]
| submitted materials |
| 111 |
Poleg-Polsky A, Diamond JS (2011) Imperfect Space Clamp Permits Electrotonic Interactions between Inhibitory and Excitatory Synaptic Conductances, Distorting Voltage Clamp Recordings.
PLoS ONE 6(4):e119463-.
| both |
| 112 |
Powers RK, Elbasiouny SM, Rymer WZ, Heckman CJ (2011) Contribution of Intrinsic Properties and Synaptic Inputs to Motoneuron Discharge Patterns: A Simulation Study. J Neurophysiol [PubMed]
| submitted materials |
| 113 |
Ratte S, Prescott SA (2011) ClC-2 channels regulate neuronal excitability, not
intracellular chloride levels
J Neurosci 31(44):15838-15843
| submitted materials |
| 114 |
Shah MM, Migliore M, Brown DA (2011) Differential effects of Kv7 (M-) channels on synaptic integration in distinct subcellular compartments of rat hippocampal pyramidal neurons. J Physiol 589:6029-38 [PubMed]
| submitted materials |
| 115 |
Simões de Souza F, De Schutter E (2011) Robustness effect of gap junctions between Golgi cells on cerebellar cortex oscillations Neural Systems & Circuits 1:7:1-19
| submitted materials |
| 116 |
Stacey WC, Krieger A, Litt B (2011) Network recruitment to coherent
oscillations in a hippocampal computer model. J Neurophysiol 105(4):1464-1481 [PubMed]
| submitted materials |
| 116 |
Stacey WC, Krieger A, Litt B (2011) Network recruitment to coherent
oscillations in a hippocampal computer model. J Neurophysiol 105(4):1464-1481 [PubMed]
| obtained materials |
| 117 |
Stanley DA, Bardakjian BL, Spano ML, Ditto WL (2011) Stochastic amplification of calcium-activated potassium currents in Ca(2+) microdomains. J Comput Neurosci [PubMed]
| submitted materials |
| 118 |
Taylor PN, Baier G (2011) A spatially extended model for macroscopic spike-wave discharges. J Comput Neurosci [PubMed]
| submitted materials |
| 119 |
Testa-Silva G, Loebel A, Giugliano M, de Kock CP, Mansvelder HD, Meredith RM (2011) Hyperconnectivity and Slow Synapses during Early Development of Medial Prefrontal
Cortex in a Mouse Model for Mental Retardation and Autism Cerebral Cortex 22(6):1333-42 [PubMed]
| submitted materials |
| 120 |
Vladimirov N, Tu Y, Traub RD (2012) Shortest loops are pacemakers in
random networks of electrically coupled axons Frontiers in Computational Neuroscience 6:17 [PubMed]
| submitted materials |
| 121 |
Welday AC, Shlifer IG, Bloom ML, Zhang K, Blair HT (2011) Cosine Directional Tuning of Theta Cell Burst Frequencies: Evidence for
Spatial Coding by Oscillatory Interference
J. Neurosci. 31:16157-16176 [PubMed]
| submitted materials |
| 122 |
Wenger C, Paredes L, Rattay F (2011) Current-distance relations for microelectrode stimulation of pyramidal cells. Artif Organs 35:263-6 [PubMed]
| obtained materials |
| 123 |
Yamazaki T, Ikeno H, Okumura Y, Satoh S, Kamiyama Y, Hirata Y, Inagaki K, Ishihara A, et al. (2011) Simulation Platform: A cloud-based online simulation environment. Neural Netw 24:693-8 [PubMed]
| mentions |
| 124 |
Zandt BJ, ten Haken B, van Dijk JG, van Putten MJAM (2011) Neural Dynamics during Anoxia and the "Wave of Death" PLoS ONE 6(7):e22127
| submitted materials |
| 125 |
van Elburg R (2011) Stochastic Continuous Time Neurite Branching Models with Tree and Segment Dependent Rates Journal of Theoretical Biology 276(1):159-173
| submitted materials |
| 126 |
Anwar H, Hong S, De Schutter E (2010) Controlling Ca(2+)-Activated K (+) Channels with Models of Ca (2+) Buffering in Purkinje Cells. Cerebellum [PubMed]
| submitted materials |
| 127 |
Ascoli GA, Gasparini S, Medinilla V, Migliore M (2010) Local Control of Post-Inhibitory Rebound Spiking in CA1 Pyramidal Neuron Dendrites J.Neurosci. 30(18):6434-42 [PubMed]
| submitted materials |
| 128 |
Baker JL, Perez-Rosello T, Migliore M, Barrionuevo G, Ascoli GA (2010) A computer model of unitary responses from associational-commissural and perforant path synapses in hippocampal CA3 pyramidal cells. J Comput Neurosci [PubMed]
| submitted materials |
| 129 |
Botta P, de Souza FM, Sangrey T, De Schutter E, Valenzuela CF (2010) Alcohol excites cerebellar Golgi cells by inhibiting the Na(+)-K(+) ATPase. Neuropsychopharmacology 35:1984-96 [PubMed]
| submitted materials |
| 130 |
Branco T, Clark BA, Hausser M (2010) Dendritic Discrimination of Temporal Input Sequences in Cortical Neurons. Science 329(5999):1671-1675 [PubMed]
| submitted materials |
| 131 |
Brazhe AR, Maksimov GV, Mosekilde E, Sosnovtseva O (2010) Excitation block in a
nerve fibre model owing to potassium-dependent changes in myelin resistance Journal of Interface Focus 1(1):86-100
| submitted materials |
| 132 |
Cannon RC, O`Donnell C, Nolan MF (2010) Stochastic ion channel gating in dendritic neurons: morphology dependence and probabilistic synaptic activation of dendritic spikes. PLoS Comput Biol [PubMed]
| obtained materials |
| 133 |
Chen BS, Lo YC, Liu YC, Wu SN (2010) Effects of transient receptor potential-like
current on the firing pattern of action potentials in the Hodgkin-Huxley neuron during exposure to sinusoidal external voltage Chinese Journal of Physiology 53(6):423-429
| submitted materials |
| 134 |
Dover K, Solinas S, D`Angelo E, Goldfarb M (2010) Long-term inactivation particle for voltage-gated sodium channels. J Physiol 588:3695-711 [PubMed]
| submitted materials |
| 135 |
Edgerton JR, Hanson JE, Gunay C, Jaeger D (2010) Dendritic sodium channels regulate network integration in globus pallidus neurons: a modeling study. J Neurosci 30:15146-59 [PubMed]
| submitted materials |
| 136 |
Gabbiani F, Cox SJ (2010) Mathematics for Neuroscientists :1-486
| obtained materials |
| 137 |
Gambazzi L, Gokce O, Seredenina T, Katsyuba E, Runne H, Markram H, Giugliano M, Luthi-Carter (2010) Diminished activity-dependent BDNF expression underlies cortical neuron microcircuit hypoconnectivity resulting from exposure to mutant huntingtin fragments. J Pharmacol Exp Ther [PubMed]
| submitted materials |
| 138 |
Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray (2010) NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS Comput Biol 6:e1000815 [PubMed]
| obtained materials |
| 139 |
Goldwyn JH, Imennov NS, Famulare M, Shea-Brown E (2011) On stochastic diff erential equation models for ion channel noise in Hodgkin-Huxley
neurons
Phys. Rev. E 83:041908
| submitted materials |
| 140 |
Hahn PJ, McIntyre CC (2010) Modeling shifts in the rate and pattern of subthalamopallidal network activity during deep brain stimulation. J Comput Neurosci 28:425-41 [PubMed]
| submitted materials |
| 141 |
Jedlicka P, Hoon M, Papadopoulos T, Vlachos A, Winkels R, Poulopoulos A, Betz H, Deller T, Br (2010) Increased Dentate Gyrus Excitability in Neuroligin-2-Deficient Mice in Vivo. Cereb Cortex [PubMed]
| obtained materials |
| 142 |
Kim M, Huang T, Abel T, Blackwell KT (2010) Temporal Sensitivity of Protein Kinase A Activation in Late-Phase Long Term Potentiation PLoS Comput Biol 6(2):e1000691
| submitted materials |
| 143 |
Kuznetsova AY, Huertas MA, Kuznetsov AS, Paladini CA, Canavier CC (2010) Regulation of firing frequency in a computational model of a midbrain dopaminergic neuron. J Comput Neurosci 28:389-403 [PubMed]
| submitted materials |
| 144 |
Le Franc Y, Le Masson G (2010) Multiple firing patterns in deep Dorsal Horn Neurons of the spinal cord: computational analysis of mechanisms and functional implications. J Neurophysiol [PubMed]
| both |
| 145 |
Manninen T, Hituri K, Kotaleski JH, Blackwell KT, Linne ML (2010) Postsynaptic signal transduction models for long-term potentiation and depression. Front Comput Neurosci 4:152 [PubMed]
| mentions |
| 146 |
Migliore M, Hines M, McTavish TS, Shepherd GM (2010) Functional roles of distributed synaptic clusters in the mitral-granule cell network of the olfactory bulb Frontiers in Integrative Neuroscience 4:122 [PubMed]
| both |
| 147 |
Morse TM, Carnevale NT, Mutalik PG, Migliore M, Shepherd GM (2010) Abnormal excitability of oblique dendrites implicated in early Alzheimer's: a computational study Front. Neural Circuits 4:16 [PubMed]
| both |
| 148 |
Munro E, Borgers C (2010) Mechanisms of very fast oscillations in networks of axons coupled by gap junctions. J Comput Neurosci [PubMed]
| submitted materials |
| 149 |
Neymotin SA, Jacobs KM, Fenton AA, Lytton WW (2010) Synaptic information transfer in computer models of neocortical columns. J Comput Neurosci [PubMed]
| submitted materials |
| 150 |
Omurtag A, Lytton WW (2010) Spectral method and high-order finite differences for the nonlinear cable equation. Neural Comput 22:2113-36 [PubMed]
| submitted materials |
| 151 |
Rivest F, Kalaska JF, Bengio Y (2010) Alternative time
representation in dopamine models.
Journal of Computational Neuroscience 28:107-30 [PubMed]
| submitted materials |
| 152 |
Safiulina VF, Caiati MD, Sivakumaran S, Bisson G, Migliore M, Cherubini E (2010) Control of GABA release at mossy fiber-CA3 connections in the developing hippocampus Front Synaptic Neurosci
| submitted materials |
| 153 |
Schmidt-Hieber C, Bischofberger J (2010) Fast Sodium Channel Gating Supports Localized and Efficient Axonal Action Potential Initiation
J. Neurosci. 30(30):10233-10242 [PubMed]
| obtained materials |
| 154 |
Schultheiss NW, Edgerton JR, Jaeger D (2010) Phase response curve analysis of a full morphological globus pallidus
neuron model reveals distinct perisomatic and dendritic modes of synaptic
integration J. Neurosci. 30(7):2767-2782 [PubMed]
| submitted materials |
| 155 |
Spiga S, Lintas A, Migliore M, Diana M (2010) Altered architecture and functional consequences of the mesolimbic dopamine system
in cannabis dependence
Addiction Biology
| both |
| 156 |
Steuber V, Schultheiss NW, Silver RA, De Schutter E, Jaeger D (2010) Determinants of synaptic integration and heterogeneity in rebound firing explored with data-driven models of deep cerebellar nucleus cells. J Comput Neurosci [PubMed]
| submitted materials |
| 157 |
Uebachs M, Opitz T, Royeck M, Dickhof G, Horstmann MT, Isom LL, Beck H (2010) Efficacy Loss of the Anticonvulsant Carbamazepine in Mice Lacking Sodium Channel beta Subunits via Paradoxical Effects on Persistent Sodium Currents. J Neurosci 30:8489-501 [PubMed]
| submitted materials |
| 158 |
Vervaeke K, Lorincz A, Gleeson P, Farinella M, Nusser Z, Silver RA (2010) Rapid Desynchronization of an Electrically Coupled Interneuron Network with Sparse Excitatory Synaptic Input. Neuron 67:435-451 [PubMed]
| submitted materials |
| 158 |
Vervaeke K, Lorincz A, Gleeson P, Farinella M, Nusser Z, Silver RA (2010) Rapid Desynchronization of an Electrically Coupled Interneuron Network with Sparse Excitatory Synaptic Input. Neuron 67:435-451 [PubMed]
| obtained materials |
| 159 |
Vierling-Claassen D, Cardin JA, Moore CI, Jones SR (2010) Computational modeling of distinct neocortical oscillations driven by cell-type selective optogenetic drive: separable resonant circuits controlled by low-threshold spiking and fast-spiking interneurons. Front Hum Neurosci 4:198 [PubMed]
| both |
| 160 |
Wimmer VC, Reid CA, Mitchell S, Richards KL, Scaf BB, Leaw BT, Hill EL, Royeck M, Horstmann M (2010) Axon initial segment dysfunction in a mouse model of genetic epilepsy with febrile seizures plus. J Clin Invest 120:2661-71 [PubMed]
| submitted materials |
| 161 |
Zilli EA, Hasselmo ME (2010) Coupled Noisy Spiking Neurons as Velocity-Controlled Oscillators in a Model of Grid Cell Spatial Firing
J. Neurosci. 30(41):13850-13860
| submitted materials |
| 162 |
van Elburg RA, van Ooyen A (2010) Impact of dendritic size and dendritic topology on burst firing in pyramidal cells. PLoS Comput Biol 6:e1000781 [PubMed]
| submitted materials |
| 163 |
Acker CD, Antic SD (2009) Quantitative Assessment of the Distributions of Membrane Conductances Involved in Action Potential Backpropagation Along Basal Dendrites. J Neurophysiol 101:1524-1541 [PubMed]
| both |
| 164 |
Bahmer A, Langner G (2009) Parameters for a model of an oscillating neuronal network in the cochlear nucleus defined by genetic algorithms. Biol Cybern 102:81-93 [PubMed]
| obtained materials |
| 165 |
Chandrasekaran L, Matveev V, Bose A (2009) Multistability of clustered states in a globally inhibitory network Physica D: Nonlinear Phenomena 238(3):253-263
| submitted materials |
| 166 |
Cheung KH, Lim E, Samwald M, Chen H, Marenco L, Holford ME, Morse TM, Mutalik P, et al. (2009) Approaches to neuroscience data integration Briefings in Bioinformatics 10:345-353
| mentions |
| 167 |
Cressman JR, Ullah G, Ziburkus J, Schiff SJ, Barreto E (2009) The influence of sodium and potassium dynamics on excitability, seizures, and the stability of persistent states: I. Single neuron dynamics. J Comput Neurosci 26:159-70 [PubMed]
| submitted materials |
| 168 |
Crisp KM (2009) Multiple spike initiation zones in a neuron implicated in learning in the leech: a computational model. Invert Neurosci 9:1-10 [PubMed]
| both |
| 169 |
De Schutter E (2009) Computational Modeling Methods for Neuroscientists, De Schutter E, ed. pp.1
| mentions |
| 170 |
Deister CA, Chan CS, Surmeier J, Wilson CJ (2009) Calcium-Activated SK Channels Influence Voltage-Gated Ion Channels to Determine the Precision of Firing in Globus Pallidus Neurons
J. Neurosci. 29:8452-8461 [PubMed]
| both |
| 171 |
Destexhe A, Victor JD (2009) Editorial J Comput Neurosci 27:1-1
| mentions |
| 172 |
Endler L, Rodriguez N, Juty N, Chelliah V, Laibe C, Li C, Le Novere N (2009) Designing and encoding models for synthetic biology J R Soc Interface 6:S405-S417 [PubMed]
| mentions |
| 173 |
Ferrante M, Migliore M, Ascoli GA (2009) Feed-forward inhibition as a buffer of the neuronal input-output relation PNAS 106(42):18004-18009
| submitted materials |
| 174 |
Gold C, Girardin C, Martin K, Koch C (2009) High Amplitude Positive Spikes Recorded Extracellularly in Cat Visual Cortex
J Neurophysiol
| obtained materials |
| 175 |
Gouwens NW, Wilson RI (2009) Signal propagation in Drosophila central neurons. J Neurosci 29:6239-49 [PubMed]
| submitted materials |
| 176 |
Gunay C, Edgerton JR, Li S, Sangrey T, Prinz AA, Jaeger D (2009) Database analysis of simulated and recorded electrophysiological datasets with PANDORA's toolbox. Neuroinformatics 7:93-111 [PubMed]
| mentions |
| 177 |
Hines ML, Davison AP, Muller E (2009) NEURON and Python Frontiers in Neuroinformatics 3:1 [PubMed]
| submitted materials |
| 178 |
Hjorth J, Blackwell KT, Kotaleski JH (2009) Gap junctions between striatal fast spiking interneurons regulate spiking activity and synchronisation as a function of cortical activity J Neurosci 29(16):5276-5286
| submitted materials |
| 179 |
Huang CW, Tsai JJ, Huang CC, Wu SN (2009) Experimental and simulation studies on the mechanisms of levetiracetam-mediated inhibition of delayed-rectifier potassium current (Kv3.1): contribution to the firing of action
potentials
J Physiol Pharmacol
| submitted materials |
| 180 |
Huang CW, Cheng JT, Tsai JJ, Wu SN, Huang CC (2009) Diabetic Hyperglycemia Aggravates Seizures and Status Epilepticus-induced Hippocampal Damage. Neurotox Res 15:71-81 [PubMed]
| submitted materials |
| 181 |
Jones SR, Pritchett DL, Sikora MA, Stufflebeam SM, Hamalainen M, Moore CI (2009) Quantitative Analysis and Biophysically Realistic Neural Modeling of the MEG Mu Rhythm: Rhythmogenesis and Modulation of Sensory-Evoked Responses. J Neurophysiol 102:3554-72 [PubMed]
| both |
| 182 |
Komendantov AO, Ascoli GA (2009) Dendritic excitability and neuronal morphology as determinants of synaptic efficacy. J Neurophysiol 101:1847-1866 [PubMed]
| obtained materials |
| 183 |
Kuhn A, Keller T, Micera S, Morari M (2009) Array electrode design for transcutaneous electrical stimulation: a simulation study. Med Eng Phys 31:945-51 [PubMed]
| obtained materials |
| 184 |
Marcelin B, Chauviere L, Becker A, Migliore M, Esclapez M, Bernard C (2009) h channel-dependent deficit of theta oscillation resonance and phase shift in temporal lobe epilepsy. Neurobiol Dis 33(3):436-447 [PubMed]
| submitted materials |
| 185 |
Marre O, El Boustani S, Fregnac Y, Destexhe A (2009) Prediction of spatiotemporal patterns of neural activity from pairwise correlations. Phys Rev Lett 102:138101 [PubMed]
| submitted materials |
| 186 |
Marre O, Yger P, Davison AP, Fregnac Y (2009) Reliable Recall of Spontaneous Activity Patterns in Cortical Networks
J. Neurosci. 29(46):14596-14696
| submitted materials |
| 187 |
Masquelier T, Hugues E, Deco G, Thorpe SJ (2009) Oscillations, Phase-of-Firing Coding and Spike Timing-Dependent Plasticity:
an Efficient Learning Scheme.
J. Neurosci. 29(43):13484-13493 [PubMed]
| submitted materials |
| 188 |
Menona V, Spruston N, Kath WL (2009) A state-mutating genetic algorithm to design
ion-channel models
PNAS 106(36):16829-16834
| submitted materials |
| 189 |
Miceli F, Soldovieri MV, Lugli L, Bellini G, Ambrosino P, Migliore M, Del Giudice EM, Ferrari (2009) Neutralization of a unique, negatively-charged residue in the voltage sensor of K(V)7.2 subunits in a sporadic case of benign familial neonatal seizures. Neurobiol Dis [PubMed]
| submitted materials |
| 190 |
Mohapatra DP, Misonou H, Pan SJ, Held JE, Surmeier DJ, Trimmer JS (2009) Regulation of intrinsic excitability in hippocampal neurons by activity-dependent modulation of the KV2.1 potassium channel. Channels (Austin) 3:46-56 [PubMed]
| submitted materials |
| 191 |
Nickerson DP, Buist ML (2009) A physiome standards-based model publication paradigm Phil Trans R Soc A. 367(1895):1823-1844
| mentions |
| 192 |
Oltedal L, Veruki ML, Hartveit E (2009) Passive membrane properties and electrotonic signal processing in retinal rod bipolar cells. J Physiol 587:829-49 [PubMed]
| obtained materials |
| 193 |
Omori T, Aonishi T, Miyakawa H, Inoue M, Okada M (2009) Steep Decrease in the Specific Membrane Resistance in the Apical Dendrites of Hippocampal CA1 Pyramidal Neurons Neuroscience Research
| obtained materials |
| 194 |
Shao J, Lai D, Meyer U, Luksch H, Wessel R (2009) Generating oscillatory bursts from a network of regular spiking
neurons without inhibition J. Comp. Neurosci. 27:591-606 [PubMed]
| submitted materials |
| 195 |
Somjen GG, Kager H, Wadman WJ (2009) Calcium sensitive non-selective cation current promotes seizure-like discharges and spreading depression in a model neuron. J Comput Neurosci 26:139-47 [PubMed]
| submitted materials |
| 196 |
Steephen JE, Manchanda R (2009) Differences in biophysical properties of nucleus accumbens medium spiny neurons emerging from inactivation of inward rectifying potassium currents. J Comput Neurosci [PubMed]
| submitted materials |
| 197 |
Stewart RD, Bair W (2009) Spiking neural network simulation: numerical integration with the Parker-Sochacki method. J Comput Neurosci [PubMed]
| submitted materials |
| 198 |
Stiefel KM, Gutkin BS, Sejnowski TJ (2009) The effects of cholinergic neuromodulation on neuronal phase-response curves of modeled cortical neurons. J Comput Neurosci 26:289-301 [PubMed]
| submitted materials |
| 199 |
Thomas EA, Reid CA, Berkovic SF, Petrou S (2009) Prediction by Modeling That Epilepsy May Be Caused by Very Small Functional Changes in Ion Channels Arch Neurol. 66(10):1225-1232 [PubMed]
| both |
| 200 |
Thomas EA, Reid CA, Petrou S (2009) Mossy fiber sprouting interacts with sodium channel mutations to increase dentate gyrus excitability. Epilepsia [PubMed]
| both |
| 201 |
Ullah G, Cressman JR, Barreto E, Schiff SJ (2009) The influence of sodium and potassium dynamics on excitability, seizures, and the stability of persistent states. II. Network and glial dynamics. J Comput Neurosci 26:171-83 [PubMed]
| submitted materials |
| 202 |
Yang Z, Hennig MH, Postlethwaite M, Forsythe ID, Graham BP (2009) Wide-band information transmission at the calyx of held. Neural Comput 21:991-1017 [PubMed]
| submitted materials |
| 203 |
Zahid T, Skinner FK (2009) Predicting synchronous and asynchronous network groupings of hippocampal interneurons coupled with dendritic gap junctions. Brain Res 1262:115-29 [PubMed]
| mentions |
| 204 |
van Elburg RA, van Ooyen A (2009) Generalization of the Event-Based Carnevale-Hines Integration Scheme for Integrate-and-Fire Models. Neural Comput 21:1913-1930 [PubMed]
| submitted materials |
| 205 |
Aisa B, Mingus B, O`Reilly R (2008) The Emergent neural modeling system. Neural Netw [PubMed]
| mentions |
| 206 |
Bar-Yehuda D, Korngreen A (2008) Space clamp problems when voltage clamping neurons expressing voltage-gated conductances. J Neurophysiol 99(3):1127-33 [PubMed]
| submitted materials |
| 207 |
Cali C, Berger TK, Pignatelli M, Carleton A, Markram H, Giugliano M (2008) Inferring connection proximity in networks of electrically coupled cells by subthreshold
frequency response analysis J Comp Neurosci 24:330-45 [PubMed]
| submitted materials |
| 208 |
Cassara AM, Hagberg GE, Bianciardi M, Migliore M, Maraviglia B (2008) Realistic simulations of neuronal activity: A contribution to the debate on direct detection of neuronal currents by MRI. Neuroimage 39:87-106 [PubMed]
| obtained materials |
| 209 |
Cassara AM, Maraviglia B (2008) Microscopic investigation the resonant mechanism for the implementation of nc-MRI at Ultra-Low Field
NeuroImage 41(4):1228-41
| submitted materials |
| 210 |
Chen E, Stiefel KM, Sejnowski TJ, Bullock TH (2008) Model of traveling waves in a coral nerve network. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 194:195-200 [PubMed]
| submitted materials |
| 211 |
Curti S, Gomez L, Budelli R, Pereda AE (2008) Subthreshold sodium current underlies essential functional specializations at primary auditory afferents. J Neurophysiol 99:1683-99 [PubMed]
| obtained materials |
| 212 |
Day M, Wokosin D, Plotkin JL, Tian X, Surmeier DJ (2008) Differential excitability and modulation of striatal medium spiny neuron dendrites. J Neurosci 28:11603-14 [PubMed]
| obtained materials |
| 213 |
De Schutter E (2008) Why are computational neuroscience and systems biology so separate? PLoS Comput Biol 4:e1000078 [PubMed]
| mentions |
| 214 |
Diwakar S, Magistretti J, Goldfarb M, Naldi G, D`Angelo E (2009) Axonal Na+ channels ensure fast spike activation and back-propagation in cerebellar granule cells J Neurophysiol 101(2):519-32 [PubMed]
| submitted materials |
| 215 |
Djurisic M, Popovic M, Carnevale N, Zecevic D (2008) Functional Structure of the Mitral Cell Dendritic Tuft in the Rat Olfactory Bulb
J. Neurosci. 28:4057-4068 [PubMed]
| both |
| 216 |
Donohue DE, Ascoli GA (2008) A comparative computer simulation of dendritic morphology. PLoS Comput Biol 4:e1000089 [PubMed]
| submitted materials |
| 217 |
Dyhrfjeld-Johnsen J, Morgan RJ, Foldy C, Soltesz I (2008) Upregulated h-current in hyperexcitable CA1 dendrites after febrile seizures Front in Cell Neurosci in press:1-8
| obtained materials |
| 218 |
Gertler TS, Chan CS, Surmeier DJ (2008) Dichotomous anatomical properties of adult striatal medium spiny neurons. J Neurosci 28:10814-24 [PubMed]
| both |
| 219 |
Gow A, Devaux J (2008) A model of tight junction function in central nervous system myelinated axons. Neuron Glia Biol 4:307-17 [PubMed]
| obtained materials |
| 220 |
Grill WM, Cantrell MB, Robertson MS (2008) Antidromic propagation of action potentials in branched axons: implications for the mechanisms of action of deep brain stimulation. J Comput Neurosci 24:81-93 [PubMed]
| obtained materials |
| 221 |
Grunditz A, Holbro N, Tian L, Zuo Y, Oertner TG (2008) Spine Neck Plasticity Controls Postsynaptic Calcium Signals through Electrical Compartmentalization J Neurosci 28(50):13457-13466 [PubMed]
| obtained materials |
| 222 |
Gunay C, Edgerton JR, Jaeger D (2008) Channel density distributions explain spiking variability in the globus pallidus: a combined physiology and computer simulation database approach. J Neurosci 28:7476-91 [PubMed]
| submitted materials |
| 223 |
Hemond P, Epstein D, Boley A, Migliore M, Ascoli GA, Jaffe DB (2008) Distinct classes of pyramidal cells exhibit mutually exclusive firing patterns in hippocampal area CA3b
Hippocampus 18(4):411-24 [PubMed]
| submitted materials |
| 224 |
Hennig MH, Postlethwaite M, Forsythe ID, Graham BP (2008) Interactions between multiple sources of short term plasticity during evoked and spontaneous activity at the rat calyx of Held J Physiol 586(13):3129-3146 [PubMed]
| submitted materials |
| 225 |
Hines M, Eichner H, Schuermann F (2008) Neuron splitting in compute-bound
parallel network simulations enables runtime scaling
with twice as many processors
J Comput Neurosci 25(1):203-210 [PubMed]
| submitted materials |
| 226 |
Hines ML, Carnevale NT (2008) Translating network models to parallel hardware
in NEURON J. Neurosci. Meth. 169:425-455 [PubMed]
| submitted materials |
| 227 |
Hines ML, Markram H, Schuermann F (2008) Fully Implicit Parallel Simulation of Single Neurons
J Comp Neurosci 25:439-448 [PubMed]
| obtained materials |
| 228 |
Huang CW, Huang CC, Lin MW, Tsai JJ, Wu SN (2008) The synergistic inhibitory actions of oxcarbazepine on voltage-gated sodium and potassium currents in differentiated NG108-15 neuronal cells and model neurons. Int J Neuropsychopharmacol 11:597-610 [PubMed]
| submitted materials |
| 229 |
Johnson MD, McIntyre CC (2008) Quantifying the neural elements activated and inhibited by globus pallidus
deep brain stimulation J Neurophysiol 100(5):2549-2563 [PubMed]
| submitted materials |
| 230 |
Johnston J, Griffin SJ, Baker C, Forsythe ID (2008) Kv4 (A-type) potassium currents in the mouse medial nucleus of the trapezoid body. Eur J Neurosci 27:1391-9 [PubMed]
| obtained materials |
| 231 |
Kasabov N, Jain V, Benuskova L (2008) Integrating evolving brain-gene ontology and connectionist-based system for modeling and knowledge discovery. Neural Netw 21:266-75 [PubMed]
| mentions |
| 232 |
Lasiene J, Shupe L, Perlmutter S, Horner P (2008) No evidence for chronic demyelination in spared axons after spinal cord injury in a mouse. J Neurosci 28:3887-96 [PubMed]
| obtained materials |
| 233 |
Leao RN, Leao RM, da Costa LF, Rock Levinson S, Walmsley B (2008) A novel role for MNTB neuron dendrites in regulating action potential amplitude and cell excitability during repetitive firing. Eur J Neurosci 27:3095-108 [PubMed]
| obtained materials |
| 234 |
Li X, Ascoli GA (2008) Effects of synaptic synchrony on the neuronal input-output relationship. Neural Comput 20:1717-31 [PubMed]
| obtained materials |
| 235 |
Lin MW, Wang YJ, Liu SI, Lin AA, Lo YC, Wu SN (2008) Characterization of aconitine-induced block of delayed rectifier K(+) current in differentiated NG108-15 neuronal cells. Neuropharmacology [PubMed]
| submitted materials |
| 236 |
Liu YC, Wang YJ, Wu SN (2008) The mechanisms of propofol-induced block on ion currents in differentiated H9c2 cardiac cells. Eur J Pharmacol 590:93-8 [PubMed]
| both |
| 237 |
Lloyd CM, Lawson JR, Hunter PJ, Nielsen PF (2008) The CellML Model Repository. Bioinformatics [PubMed]
| mentions |
| 238 |
Lytton WW (2008) Computer modelling of epilepsy. Nat Rev Neurosci 9:626-37 [PubMed]
| obtained materials |
| 239 |
Lytton WW, Neymotin SA, Hines ML (2008) The virtual slice setup. J Neurosci Methods 171:309-15 [PubMed]
| submitted materials |
| 240 |
Lytton WW, Omurtag A, Neymotin SA, Hines ML (2008) Just in time connectivity for large spiking networks
Neural Comput 20(11):2745-56 [PubMed]
| submitted materials |
| 241 |
Migliore M, Cannia C, Canavier CC (2008) A modeling study suggesting a possible pharmacological target to mitigate the effects of ethanol on reward-related dopaminergic signaling. J Neurophysiol 99(5):2703-2707 [PubMed]
| submitted materials |
| 242 |
Migliore M, Novara G, Tegolo D (2008) Single neuron binding properties and the magical number 7. Hippocampus 18(11):1122-30 [PubMed]
| submitted materials |
| 243 |
Migliore M, Shepherd GM (2008) Dendritic action potentials connect distributed dendrodendritic microcircuits J Comp Neurosci 24(2):207-221 [PubMed]
| submitted materials |
| 244 |
Morita K (2008) Possible role of dendritic compartmentalization in the spatial working memory circuit. J Neurosci 28:7699-724 [PubMed]
| obtained materials |
| 245 |
Morita K, Kalra R, Aihara K, Robinson HP (2008) Recurrent synaptic input and the timing of gamma-frequency-modulated firing of pyramidal cells during neocortical "UP" states. J Neurosci 28:1871-81 [PubMed]
| obtained materials |
| 246 |
Morse TM (2008) ModelDB in Computational Neuroscience Education - a research tool as interactive educational media. Interactive Educational Media for the Neural and Cognitive Sciences. Brains, Minds & Media, Lorenz S, Egelhaaf M, ed. pp.bmm1409
| mentions |
| 247 |
Morse TM (2008) Neuroinformatics: From Bioinformatics to Databasing
the Brain Bioinformatics and Biology Insights 2:259-270
| mentions |
| 248 |
Moustafa AA, Cohen MX, Sherman SJ, Frank MJ (2008) A Role for Dopamine in Temporal Decision Making and Reward Maximization in
Parkinsonism J. Neurosci. 28(47):12294-12304
| obtained materials |
| 249 |
Pettersen KH, Einevoll GT (2008) Amplitude variability and extracellular low-pass filtering of neuronal spikes. Biophys J 94:784-802 [PubMed]
| obtained materials |
| 250 |
Pettersen KH, Hagen E, Einevoll GT (2008) Estimation of population firing rates and current source densities from laminar electrode recordings. J Comput Neurosci 24:291-313 [PubMed]
| obtained materials |
| 251 |
Phillips KP, Foster WG (2008) Key developments in endocrine disrupter research and human health. J Toxicol Environ Health B Crit Rev 11:322-44 [PubMed]
| mentions |
| 252 |
Ray S, Bhalla US (2008) PyMOOSE: Interoperable Scripting in Python for MOOSE. Front Neuroinformatics 2(6):1-16 [PubMed]
| obtained materials |
| 253 |
Shah MM, Migliore M, Valencia I, Cooper EC, Brown DA (2008) Functional significance of axonal Kv7 channels in hippocampal pyramidal neurons. Proc Natl Acad Sci U S A 105(22):7869-7874 [PubMed]
| submitted materials |
| 254 |
Sylantyev S, Savtchenko LP, Niu YP, Ivanov AI, Jensen TP, Kullmann DM, Xiao MY, Rusakov DA (2008) Electric fields due to synaptic currents sharpen excitatory transmission. Science 319:1845-9 [PubMed]
| obtained materials |
| 255 |
Thomas EA, Petrou S (2008) Case for realistic modeling in understanding seizures. Expert Rev Neurother 8:1771-3 [PubMed]
| mentions |
| 256 |
Touboul J, Brette R (2008) Dynamics and bifurcations of the adaptive exponential
integrate-and-fire model Biol Cyber 99(4-5):319-34 [PubMed]
| submitted materials |
| 257 |
Veruki ML, Oltedal L, Hartveit E (2008) Electrical synapses between AII amacrine cells: dynamic range and functional consequences of variation in junctional conductance. J Neurophysiol [PubMed]
| obtained materials |
| 258 |
Wang YJ, Chen BS, Lin MW, Lin AA, Peng H, Sung RJ, Wu SN (2008) Time-Dependent Block of Ultra-Rapid Delayed Rectifier K+ Currents by Aconitine, a Potent Cardiotoxin, in Heart-Derived H9c2 Myoblasts and in Neonatal Rat Ventricular Myocytes. Toxicol Sci 106(2):454-463 [PubMed]
| submitted materials |
| 259 |
Zagha E, Lang EJ, Rudy B (2008) Kv3.3 channels at the Purkinje cell soma are necessary for generation of the classical complex spike waveform. J Neurosci 28:1291-300 [PubMed]
| obtained materials |
| 260 |
Arsiero M, Luscher HR, Lundstrom BN, Giugliano M (2007) The Impact of Input Fluctuations on the Frequency-Current Relationships of Layer 5 Pyramidal Neurons in the Rat Medial Prefrontal Cortex. J Neurosci 27(12):3274-3284 [PubMed]
| submitted materials |
| 261 |
Ascoli GA (2007) Successes and rewards in sharing digital reconstructions of neuronal morphology. Neuroinformatics 5:154-60 [PubMed]
| mentions |
| 262 |
Ascoli GA, Donohue DE, Halavi M (2007) NeuroMorpho.Org: a central resource for neuronal morphologies. J Neurosci 27:9247-51 [PubMed]
| mentions |
| 263 |
Baxter DA, Byrne JH (2007) Simulator for neural networks and action potentials. Methods Mol Biol 401:127-54 [PubMed]
| mentions |
| 264 |
Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, et al. (2007) Simulation of networks of spiking neurons: A review of tools and strategies. J Comp Neurosci 23:349-98 [PubMed]
| both |
| 265 |
Burrell BD, Crisp KM (2007) Serotonergic modulation of afterhyperpolarization in a neuron that contributes to learning in the leech. J Neurophysiol [PubMed]
| submitted materials |
| 266 |
Calin-Jageman RJ, Tunstall MJ, Mensh BD, Katz PS, Frost WN (2007) Parameter space analysis suggests multi-site plasticity contributes to motor pattern initiation in Tritonia. J Neurophysiol 98(4):2382-98 [PubMed]
| submitted materials |
| 267 |
Cannon RC, Gewaltig MO, Gleeson P, Bhalla US, Cornelis H, Hines ML, Howell FW, Muller E, Stil (2007) Interoperability of neuroscience modeling software: current status and future directions. Neuroinformatics 5:127-38 [PubMed]
| mentions |
| 268 |
Coombes S, Timofeeva Y, Svensson CM, Lord GJ, Josie K, Cox SJ, Colbert CM (2007) Branching dendrites with resonant membrane: a "sum-over-trips" approach. Biol Cybern 97:137-49 [PubMed]
| mentions |
| 269 |
Cornelisse LN, van Elburg RAJ, Meredith RM, Yuste R, Mansvelder HD (2007) High Speed Two-Photon Imaging of Calcium Dynamics in Dendritic Spines: Consequences for Spine Calcium Kinetics and Buffer Capacity. PLoS ONE 2(10):e1073 [PubMed]
| submitted materials |
| 270 |
Crasto CJ, Marenco LN, Liu N, Morse TM, Cheung KH, Lai PC, Bahl G, Masiar P, Lam HY, Lim E, C (2007) SenseLab: new developments in disseminating neuroscience information. Brief Bioinform 8:150-62 [PubMed]
| mentions |
| 271 |
Crasto CJ, Shepherd GM (2007) Managing knowledge in neuroscience. Methods Mol Biol 401:3-21 [PubMed]
| mentions |
| 272 |
Dyhrfjeld-Johnsen J, Santhakumar V, Morgan RJ, Huerta R, Tsimring L, Soltesz I (2007) Topological determinants of epileptogenesis in large-scale structural and functional models of the dentate gyrus derived from experimental data. J Neurophysiol 97:1566-87 [PubMed]
| submitted materials |
| 273 |
Garcia-Lazaro JA, Ho SS, Nair A, Schnupp JW (2007) Shifting and scaling adaptation to dynamic stimuli in somatosensory cortex. Eur J Neurosci 26:2359-68 [PubMed]
| obtained materials |
| 274 |
Gleeson P, Steuber V, Silver RA (2007) neuroConstruct: a tool for modeling networks of neurons in 3D space. Neuron 54:219-35 [PubMed]
| obtained materials |
| 275 |
Gold C, Henze DA, Koch C (2007) Using Extracellular Action Potential Recordings to Tune Compartmental Models. Journal of Computational Neuroscience 23:39-58 [PubMed]
| submitted materials |
| 276 |
Hines ML, Morse TM, Carnevale NT (2007) Book chapter, Model structure analysis in NEURON : toward interoperability among neural simulators. Methods Mol Biol 401:91-102 [PubMed]
| mentions |
| 277 |
Jones SR, Pritchett DL, Stufflebeam SM, Hamalainen M, Moore CI (2007) Neural correlates of tactile detection: a combined magnetoencephalography and biophysically based computational modeling study. J Neurosci 27:10751-64 [PubMed]
| both |
| 278 |
Karbowski J, Schindelman G, Cronin CJ, Seah A, Sternberg PW (2007) Systems level circuit model of C. elegans undulatory locomotion: mathematical modeling and molecular genetics. J Comput Neurosci [PubMed]
| submitted materials |
| 279 |
Kole MH, Brauer AU, Stuart GJ (2007) Inherited cortical HCN1 channel loss amplifies dendritic calcium electrogenesis and burst firing in a rat absence epilepsy model. J Physiol 578:507-25 [PubMed]
| submitted materials |
| 280 |
Kretzberg J, Kretschmer F, Marin-Burgin A (2007) Effects of multiple spike-initiation zones in touch sensory cells of the leech
, Volume 70, Issues 10-12, June 2007, Pages 1645-1651
Neurocomputing 70:1645-1651
| submitted materials |
| 281 |
Kulagina IB, Korogod SM, Horcholle-Bossavitt G, Batini C, Tyc-Dumont S (2007) The electro-dynamics of the dendritic space in Purkinje cells of the cerebellum. Arch Ital Biol 145:211-33 [PubMed]
| obtained materials |
| 282 |
Liu N, Marenco L, Miller PL (2007) ResourceLog: an embeddable tool for dynamically monitoring the usage of web-based bioscience resources. J Am Med Inform Assoc 13:432-7 [PubMed]
| mentions |
| 283 |
Matveev V, Bose A, Nadim F (2007) Capturing the bursting dynamics of a two-cell inhibitory network using a one-dimensional map. J Comput Neurosci 23:169-87 [PubMed]
| mentions |
| 284 |
Migliore M, Inzirillo C, Shepherd GM (2007) Learning mechanism for column formation in the olfactory bulb. Front Integr Neurosci 1:12 [PubMed]
| submitted materials |
| 285 |
Morgan RJ, Santhakumar V, Soltesz I (2007) Modeling the dentate gyrus. Prog Brain Res 163:639-58 [PubMed]
| mentions |
| 286 |
Postlethwaite M, Hennig MH, Steinert JR, Graham BP, Forsythe ID (2007) Acceleration of AMPA receptor kinetics underlies temperature-dependent changes in synaptic strength at the rat calyx of Held. J Physiol 579:69-84 [PubMed]
| submitted materials |
| 287 |
Ramasamy L, Sperelakis N (2007) Cable properties and propagation velocity in a long single chain of simulated myocardial cells. Theor Biol Med Model 4:36 [PubMed]
| submitted materials |
| 288 |
Sakurai A, Calin-Jageman RJ, Katz PS (2007) Potentiation phase of spike timing-dependent neuromodulation by a serotonergic interneuron involves an increase in the fraction of transmitter release. J Neurophysiol 98:1975-87 [PubMed]
| obtained materials |
| 289 |
Scuri R, Lombardo P, Cataldo E, Ristori C, Brunelli M (2007) Inhibition of Na+-K+ ATPase potentiates synaptic transmission in tactile sensory neurons of the leech. Eur J Neurosci 25:159-67 [PubMed]
| submitted materials |
| 290 |
Stiefel KM, Sejnowski TJ (2007) Mapping Function onto Neuronal Morphology. J Neurophysiol 98:513-526 [PubMed]
| submitted materials |
| 291 |
Wada K, Sakaguchi Y (2007) Repetitive firing of a model motoneuron: inhibitory effect of a Ca2+-activated potassium conductance on the slope of the frequency-current relationship. Neurosci Res 57:259-67 [PubMed]
| obtained materials |
| 292 |
Zaika O, Tolstykh GP, Jaffe DB, Shapiro MS (2007) Inositol triphosphate-mediated Ca2+ signals direct purinergic P2Y receptor regulation of neuronal ion channels. J Neurosci 27:8914-26 [PubMed]
| obtained materials |
| 293 |
Akemann W, Knopfel T (2006) Interaction of Kv3 potassium channels and resurgent sodium current influences the rate of spontaneous firing of Purkinje neurons. J Neurosci 26:4602-12 [PubMed]
| both |
| 294 |
Ascoli GA, Scorcioni R (2006) Neuron and Network Modeling Neuroanatomical Tract-Tracing 3, Zaborszky L, Wouterlood FG, Lanciego JL, ed. pp.604
| mentions |
| 295 |
Bathellier B, Lagier S, Faure P, Lledo PM (2006) Circuit properties generating gamma oscillations in a network model of the olfactory bulb. J Neurophysiol 95:2678-91 [PubMed]
| obtained materials |
| 296 |
Baxter DA, Byrne JH (2007) Short-term plasticity in a computational model of the tail-withdrawal circuit in Aplysia Neurocomputing 70(10-12):1993-1999
| submitted materials |
| 297 |
Cataldo E, Byrne JH, Baxter DA (2006) Computational Model of a Central Pattern Generator CMSB 2006, Lecture Notes in Bioinformatics LNBI 4210, Priami C, ed. pp.242
| submitted materials |
| 298 |
Davison AP, Fregnac Y (2006) Learning Cross-Modal Spatial Transformations through Spike Timing-Dependent
Plasticity
J Neurosci 26:5604-5615 [PubMed]
| submitted materials |
| 299 |
Eberhard JP, Wanner A, Wittum G (2006) NeuGen: a tool for the generation of realistic morphology of cortical neurons and neural networks in 3D Neurocomputing 70:327-342
| obtained materials |
| 300 |
Graham BP, Lauchlan K, McLean DR (2006) Dynamics of outgrowth in a continuum model of neurite elongation. J Comput Neurosci 20:43-60 [PubMed]
| submitted materials |
| 301 |
Kole MH, Hallermann S, Stuart GJ (2006) Single Ih channels in pyramidal neuron dendrites: properties, distribution, and impact on action potential output. J Neurosci 26:1677-87 [PubMed]
| both |
| 302 |
Kuba H, Ishii TM, Ohmori H (2006) Axonal site of spike initiation enhances auditory coincidence detection. Nature 444:1069-72 [PubMed]
| obtained materials |
| 303 |
Li X, Ascoli GA (2006) Computational simulation of the input-output relationship in hippocampal pyramidal cells J of Comput Neurosci 21(2):191-209 [PubMed]
| both |
| 304 |
Lytton WW (2006) Neural Query System: Data-mining from within the NEURON simulator. Neuroinformatics 4:163-76 [PubMed]
| obtained materials |
| 305 |
Migliore M, Cannia C, Lytton WW, Markram H, Hines ML (2006) Parallel Network Simulations with NEURON. J Comp Neurosci 21:110-119 [PubMed]
| both |
| 306 |
Murakami S, Okada Y (2006) Contributions of principal neocortical neurons to magnetoencephalography and electroencephalography signals. J Physiol 575:925-36 [PubMed]
| obtained materials |
| 307 |
Saftenku EE (2006) Presumed Mechanisms of a Long-Term Increase in the Intrinsic Excitability of Cerebellar Granule Cells: a Model Study Neirofiziologiya/Neurophysiology 38(2):101-110
| obtained materials |
| 308 |
Wang YJ, Sung RJ, Lin MW, Wu SN (2006) Contribution of BK(Ca)-channel activity in human cardiac fibroblasts to electrical coupling of cardiomyocytes-fibroblasts. J Membr Biol 213:175-85 [PubMed]
| obtained materials |
| 309 |
Weaver CM, Wearne SL (2006) The role of action potential shape and parameter constraints in optimization of compartment models Neurocomputing 69:1053-1057
| obtained materials |
| 310 |
Yokawa K,Nishimura T (2006) Book Chapter, An electrical stimulation on retinal ganglion cell for retinal prosthesis based on CMOS image sensor: A study of electrophysiological simulation
IFMBE Proceedings, World Congress on Medical Physics and Biomedical Engineering 2006 Part 23
| mentions |
| 311 |
Zaika O, Lara L, Gamper N, Hilgemann DW, Jaffe DB, Shapiro MS (2006) Angiotensin II regulates neuronal excitability via phosphatidylinositol 4,5-bisphosphate-dependent modulation of Kv7 (M-type) K+ channels. J. Physiol. 575:49-67 [PubMed]
| obtained materials |
| 312 |
van Welie I, Remme MW, van Hooft JA, Wadman WJ (2006) Different levels of Ih determine distinct temporal integration in bursting and regular-spiking neurons in rat subiculum. J Physiol 576:203-214 [PubMed]
| submitted materials |
| 313 |
Brette R, Gerstner W (2005) Adaptive exponential integrate-and-fire model as an effective description of neuronal activity. J Neurophysiol 94:3637-42 [PubMed]
| obtained materials |
| 314 |
Brown KM, Donohue DE, D`Alessandro G, Ascoli GA (2005) A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks. Neuroinformatics 3:343-60
| mentions |
| 315 |
Bug W (2005) The impact of the NIH public access policy on literature informatics: What role can the neuroinformaticists play? Neuroinformatics 3:81-91 [PubMed]
| mentions |
| 316 |
Cataldo E, Brunelli M, Byrne JH, Av-Ron E, Cai Y, Baxter DA (2005) Computational Model of Touch Sensory Cells (T Cells) of the Leech: Role of the Afterhyperpolarization (AHP) in Activity-Dependent Conduction Failure Journal of Computational Neuroscience 18:5-24 [PubMed]
| submitted materials |
| 317 |
Dyhrfjeld-Johnsen J, Maier J, Schubert D, Staiger J, Luhmann HJ, Stephan KE, Kotter R (2005) CoCoDat: a database system for organizing and selecting quantitative data on single neurons and neuronal microcircuitry. J Neurosci Methods 141:291-308 [PubMed]
| mentions |
| 318 |
Hossain WA, Antic SD, Yang Y, Rasband MN, Morest DK (2005) Where is the spike generator of the cochlear nerve? Voltage-gated sodium channels in the mouse cochlea. J Neurosci 25:6857-68 [PubMed]
| obtained materials |
| 319 |
Lazarewicz M, Das S, Finkel LH (2005) Recognition of temporal event sequences by a network of cortical neurons Neurocomputing 65-66:143-151
| obtained materials |
| 320 |
Lytton WW, Hines ML (2005) Independent variable time-step integration of individual neurons for network simulations. Neural Comput 17:903-21 [PubMed]
| both |
| 321 |
Migliore M, Ferrante M, Ascoli GA (2005) Signal propagation in oblique dendrites of CA1 pyramidal cells. J Neurophysiol 94:4145-4155 [PubMed]
| submitted materials |
| 322 |
Migliore M, Hines ML, Shepherd GM (2005) The role of distal dendritic gap junctions in synchronization of mitral cell axonal output. J Comp Neurosci 18:151-161 [PubMed]
| submitted materials |
| 323 |
Migliore M, Shepherd GM (2005) Opinion: an integrated approach to classifying neuronal phenotypes. Nat Rev Neurosci 6:810-8 [PubMed]
| obtained materials |
| 324 |
Moss BL, Fuller AD, Sahley CL, Burrell BD (2005) Serotonin modulates axo-axonal coupling between neurons critical for learning in the leech J Neurophysiol 94(4):2575-89 [PubMed]
| submitted materials |
| 325 |
Otake M, Takagi T (2005) Reassembly and interfacing neural models registered on biological model databases. Genome Inform 16:76-85 [PubMed]
| obtained materials |
| 326 |
Saghatelyan A,Roux P,Migliore M,Rochefort C,Desmaisons D,Charneau P,Shepherd GM, Lledo PM (2005) Activity-dependent adjustments of the inhibitory network in the olfactory bulb following early postnatal deprivation. Neuron 46:103-116 [PubMed]
| submitted materials |
| 327 |
Santhakumar V, Aradi I, Soltesz I (2005) Role of mossy fiber sprouting and mossy cell loss in hyperexcitability: a network model of the dentate gyrus incorporating cell types and axonal topography. J Neurophysiol 93:437-53 [PubMed]
| obtained materials |
| 328 |
Sengupta B (2005) Book Chapter, Modeling of Short-Term Synaptic Plasticity Using Dynamic Synapses Lecture Notes in Computer Science, Advances in Natural Computation
| obtained materials |
| 329 |
Shapshak P, Minagar A, Duran EM, Ziegler F, Davis W, Seth R, Kazic T (2005) Chapter 16, Gene Expression in HIV-Associated Dementia Current Clinical Neurology, Inflammatory Disorders of the Nervous System, Minagar A, Alexander JS, ed.
| mentions |
| 330 |
Sikora MA, Gottesman J, Miller RF (2005) A computational model of the ribbon synapse. J Neurosci Methods 145:47-61 [PubMed]
| submitted materials |
| 331 |
Trevelyan AJ, Watkinson O (2005) Does inhibition balance excitation in neocortex? Prog Biophys Mol Biol 87:109-43 [PubMed]
| obtained materials |
| 332 |
Wu SN, Chang HD (2005) Diethyl pyrocarbonate, a histidine-modifying agent, directly stimulates activity of ATP-sensitive potassium channels in pituitary GH(3) cells. Biochem Pharmacol [PubMed]
| submitted materials |
| 333 |
Aradi I, Maccaferri G (2004) Cell type-specific synaptic dynamics of synchronized bursting in the juvenile CA3 rat hippocampus. J Neurosci 24:9681-92 [PubMed]
| obtained materials |
| 334 |
Davison A (2004) Biologically-detailed network modelling (Chapter 10) Computation Neuroscience: A Comprehensive Approach, Feng J, ed. pp.287
| mentions |
| 335 |
Davison AP, Morse TM, Migliore M, Shepherd GM, Hines ML (2004) Semi-automated population of an online database of neuronal models (ModelDB) with citation information, using PubMed for validation. Neuroinformatics 2:327-32
| mentions |
| 336 |
Djurisic M, Antic S, Chen WR, Zecevic D (2004) Voltage imaging from dendrites of mitral cells: EPSP attenuation and spike trigger zones. J Neurosci 24:6703-14 [PubMed]
| submitted materials |
| 337 |
Gasparini S, Migliore M, Magee JC (2004) On the initiation and propagation of dendritic spikes in CA1 pyramidal neurons. J Neurosci 24:11046-11056 [PubMed]
| both |
| 338 |
Heilman AD, Quattrochi J (2004) Computational models of epileptiform activity in single neurons. Biosystems 78:1-21 [PubMed]
| obtained materials |
| 339 |
Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM (2004) ModelDB: A Database to Support Computational Neuroscience. J Comput Neurosci 17:7-11 [PubMed]
| mentions |
| 340 |
Maurice N, Mercer J, Chan CS, Hernandez-Lopez S, Held J, Tkatch T, Surmeier DJ (2004) D2 dopamine receptor-mediated modulation of voltage-dependent Na+ channels reduces autonomous activity in striatal cholinergic interneurons. J Neurosci 24:10289-301 [PubMed]
| both |
| 341 |
Richmond B (2004) Editorial Commentary J. Comp. Neurosci. 17(1):1-1
| mentions |
| 342 |
Sterratt DC, van Ooyen A (2004) Does a dendritic democracy need a ruler? Neurocomputing 58:437-442
| obtained materials |
| 343 |
Crasto CJ, Marenco LN, Migliore M, Mao B, Nadkarni PM, Miller P, Shepherd GM (2003) Text mining neuroscience journal articles to populate neuroscience databases. Neuroinformatics 1:215-37 [PubMed]
| mentions |
| 344 |
D'Alessandro G (2003) Axiope: data sharing using distributed catalogs. Neuroinformatics 1:285-8 [PubMed]
| mentions |
| 345 |
Davison AP, Feng J, Brown D (2003) Dendrodendritic inhibition and simulated odor responses in a detailed olfactory bulb network model. J Neurophysiol 90:1921-1935 [PubMed]
| submitted materials |
| 346 |
Graham LJ (2003) ModelDB, neuroinformatics, and computational neuroscience. Neuroinformatics 1:141-4 [PubMed]
| mentions |
| 347 |
Marenco L, Tosches N, Crasto C, Shepherd G, Miller PL, Nadkarni PM (2003) Achieving evolvable Web-database bioscience applications using the EAV-CR framework: recent advances. J Am Med Inform Assoc 10:444-53 [PubMed]
| mentions |
| 348 |
Migliore M (2003) On the Integration of Subthreshold Inputs from Perforant Path and Schaffer Collaterals in Hippocampal CA1 Pyramidal Neurons. J Comput Neurosci 14:185-192 [PubMed]
| submitted materials |
| 349 |
Migliore M, Morse TM, Davison AP, Marenco L, Shepherd GM, Hines ML (2003) ModelDB: making models publicly accessible to support computational neuroscience. Neuroinformatics 1:135-9 [PubMed]
| mentions |
| 350 |
Migliore M, Shepherd GM (2002) Emerging rules for the distributions of active dendritic conductances. Nature Review Neuroscience 3:362-70 [PubMed]
| submitted materials |
| 351 |
Watanabe S, Hoffman DA, Migliore M, Johnston D (2002) Dendritic K+ channels contribute to spike-timing dependent long-term potentiation in hippocampal pyramidal neurons. Proc Natl Acad Sci U S A 99:8366-8371 [PubMed]
| both |
| 352 |
Chemin J, Monteil A, Bourinet E, Nargeot J, Lory P (2001) Alternatively spliced alpha(1G) (Ca(V)3.1) intracellular loops promote specific T-type Ca(2+) channel gating properties. Biophys J 80:1238-50 [PubMed]
| obtained materials |
| 353 |
Migliore M, Messineo L, Cardaci M, Ayala GF (2001) Quantitative modeling of perception and production of time intervals. J Neurophysiol 86:2754-60 [PubMed]
| submitted materials |
| 354 |
Mirsky JS, Nadkarni PM, Healy MD, Miller PL, Shepherd GM (1998) Database tools for integrating and searching membrane property data correlated with neuronal morphology. J Neurosci Methods 82:105-21 [PubMed]
| mentions |
| 355 |
Shepherd GM, Mirsky JS, Healy MD, Singer MS, Skoufos E, Hines MS, Nadkarni PM, Miller PL (1998) The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data. Trends Neurosci 21:460-8 [PubMed]
| mentions |
| 356 |
Peterson BE, Healy MD, Nadkarni PM, Miller PL, Shepherd GM (1996) ModelDB: an environment for running and storing computational models and their results applied to neuroscience. J Am Med Inform Assoc 3:389-98 [PubMed]
| mentions |
