| 1 |
Rivest F, Kalaska JF, Bengio Y (2009) Alternative time
representation in dopamine models.
Journal of Computational Neuroscience
| submitted materials |
| 2 |
Acker CD, Antic SD (2009) Quantitative Assessment of the Distributions of Membrane Conductances Involved in Action Potential Backpropagation Along Basal Dendrites. J Neurophysiol 101:1524-1541 [PubMed]
| both |
| 3 |
Chandrasekaran L, Matveev V, Bose A (2009) Multistability of clustered states in a globally inhibitory network Physica D: Nonlinear Phenomena 238(3):253-263
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| 4 |
Cheung KH, Lim E, Samwald M, Chen H, Marenco L, Holford ME, Morse TM, Mutalik P, et al. (2009) Approaches to neuroscience data integration Briefings in Bioinformatics 10:345-353
| mentions |
| 5 |
Deister CA, Chan CS, Surmeier J, Wilson CJ (2009) Calcium-Activated SK Channels Influence Voltage-Gated Ion Channels to Determine the Precision of Firing in Globus Pallidus Neurons
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| 6 |
Destexhe A, Victor JD (2009) Editorial J Comput Neurosci 27:1-1
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Endler L, Rodriguez N, Juty N, Chelliah V, Laibe C, Li C, Le Novere N (2009) Designing and encoding models for synthetic biology J R Soc Interface 6:S405-S417 [PubMed]
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Ferrante M, Migliore M, Ascoli GA (2009) Feed-forward inhibition as a buffer of the neuronal input-output relation PNAS 106(42):18004-18009
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| 9 |
Gold C, Girardin C, Martin K, Koch C (2009) High Amplitude Positive Spikes Recorded Extracellularly in Cat Visual Cortex
J Neurophysiol
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| 10 |
Gouwens NW, Wilson RI (2009) Signal propagation in Drosophila central neurons. J Neurosci 29:6239-49 [PubMed]
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| 11 |
Gunay C, Edgerton JR, Li S, Sangrey T, Prinz AA, Jaeger D (2009) Database analysis of simulated and recorded electrophysiological datasets with PANDORA's toolbox. Neuroinformatics 7:93-111 [PubMed]
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| 12 |
Hines ML, Davison AP, Muller E (2009) NEURON and Python Frontiers in Neuroinformatics 3:1- [PubMed]
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| 13 |
Hjorth J, Blackwell KT, Kotaleski JH (2009) Gap junctions between striatal fast spiking interneurons regulate spiking activity and synchronisation as a function of cortical activity J Neurosci 29(16):5276-5286
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| 14 |
Huang CW, Cheng JT, Tsai JJ, Wu SN, Huang CC (2009) Diabetic Hyperglycemia Aggravates Seizures and Status Epilepticus-induced Hippocampal Damage. Neurotox Res 15:71-81 [PubMed]
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| 15 |
Komendantov AO, Ascoli GA (2009) Dendritic excitability and neuronal morphology as determinants of synaptic efficacy. J Neurophysiol 101:1847-1866 [PubMed]
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| 16 |
Kuhn A, Keller T, Micera S, Morari M (2009) Array electrode design for transcutaneous electrical stimulation: a simulation study. Med Eng Phys 31:945-51 [PubMed]
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| 17 |
Marre O, Yger P, Davison AP, Fregnac Y (2009) Reliable Recall of Spontaneous Activity Patterns in Cortical Networks
J. Neurosci. 29(46):14596-14696
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| 18 |
Masquelier T, Hugues E, Deco G, Thorpe SJ (2009) Oscillations, Phase-of-Firing Coding and Spike Timing-Dependent Plasticity:
an Efficient Learning Scheme.
J. Neurosci. 29(43):13484-13493 [PubMed]
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| 19 |
Menona V, Spruston N, Kath WL (2009) A state-mutating genetic algorithm to design
ion-channel models
PNAS 106(36):16829-16834
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| 20 |
Miceli F, Soldovieri MV, Lugli L, Bellini G, Ambrosino P, Migliore M, Del Giudice EM, Ferrari (2009) Neutralization of a unique, negatively-charged residue in the voltage sensor of K(V)7.2 subunits in a sporadic case of benign familial neonatal seizures. Neurobiol Dis [PubMed]
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| 21 |
Mohapatra DP, Misonou H, Pan SJ, Held JE, Surmeier DJ, Trimmer JS (2009) Regulation of intrinsic excitability in hippocampal neurons by activity-dependent modulation of the KV2.1 potassium channel. Channels (Austin) 3:46-56 [PubMed]
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| 22 |
Nickerson DP, Buist ML (2009) A physiome standards-based model publication paradigm Phil Trans R Soc A. 367(1895):1823-1844
| mentions |
| 23 |
Oltedal L, Veruki ML, Hartveit E (2009) Passive membrane properties and electrotonic signal processing in retinal rod bipolar cells. J Physiol 587:829-49 [PubMed]
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| 24 |
Omori T, Aonishi T, Miyakawa H, Inoue M, Okada M (2009) Steep Decrease in the Specific Membrane Resistance in the Apical Dendrites of Hippocampal CA1 Pyramidal Neurons Neuroscience Research
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| 25 |
Shao J, Lai D, Meyer U, Luksch H, Wessel R (2009) Generating oscillatory bursts from a network of regular spiking
neurons without inhibition J. Comp. Neurosci. 27:591-606 [PubMed]
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| 26 |
Somjen GG, Kager H, Wadman WJ (2009) Calcium sensitive non-selective cation current promotes seizure-like discharges and spreading depression in a model neuron. J Comput Neurosci 26:139-47 [PubMed]
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| 27 |
Steephen JE, Manchanda R (2009) Differences in biophysical properties of nucleus accumbens medium spiny neurons emerging from inactivation of inward rectifying potassium currents. J Comput Neurosci [PubMed]
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| 28 |
Stewart RD, Bair W (2009) Spiking neural network simulation: numerical integration with the Parker-Sochacki method. J Comput Neurosci [PubMed]
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| 29 |
Stiefel KM, Gutkin BS, Sejnowski TJ (2009) The effects of cholinergic neuromodulation on neuronal phase-response curves of modeled cortical neurons. J Comput Neurosci 26:289-301 [PubMed]
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| 30 |
Thomas EA, Reid CA, Berkovic SF, Petrou S (2009) Prediction by Modeling That Epilepsy May Be Caused by Very Small Functional Changes in Ion Channels Arch Neurol. 66(10):1225-1232 [PubMed]
| both |
| 31 |
Thomas EA, Reid CA, Petrou S (2009) Mossy fiber sprouting interacts with sodium channel mutations to increase dentate gyrus excitability. Epilepsia [PubMed]
| both |
| 32 |
Yang Z, Hennig MH, Postlethwaite M, Forsythe ID, Graham BP (2009) Wide-band information transmission at the calyx of held. Neural Comput 21:991-1017 [PubMed]
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| 33 |
Zahid T, Skinner FK (2009) Predicting synchronous and asynchronous network groupings of hippocampal interneurons coupled with dendritic gap junctions. Brain Res 1262:115-29 [PubMed]
| mentions |
| 34 |
van Elburg RA, van Ooyen A (2009) Generalization of the Event-Based Carnevale-Hines Integration Scheme for Integrate-and-Fire Models. Neural Comput 21:1913-1930 [PubMed]
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| 35 |
Aisa B, Mingus B, O`Reilly R (2008) The Emergent neural modeling system. Neural Netw [PubMed]
| mentions |
| 36 |
Bar-Yehuda D, Korngreen A (2008) Space clamp problems when voltage clamping neurons expressing voltage-gated conductances. J Neurophysiol 99(3):1127-33 [PubMed]
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| 37 |
Cali C, Berger TK, Pignatelli M, Carleton A, Markram H, Giugliano M (2008) Inferring connection proximity in networks of electrically coupled cells by subthreshold
frequency response analysis J Comp Neurosci 24:330-45 [PubMed]
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| 38 |
Cassara AM, Hagberg GE, Bianciardi M, Migliore M, Maraviglia B (2008) Realistic simulations of neuronal activity: A contribution to the debate on direct detection of neuronal currents by MRI. Neuroimage 39:87-106 [PubMed]
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| 39 |
Cassara AM, Maraviglia B (2008) Microscopic investigation the resonant mechanism for the implementation of nc-MRI at Ultra-Low Field
NeuroImage 41(4):1228-41
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| 40 |
Chen E, Stiefel KM, Sejnowski TJ, Bullock TH (2008) Model of traveling waves in a coral nerve network. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 194:195-200 [PubMed]
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| 41 |
Curti S, Gomez L, Budelli R, Pereda AE (2008) Subthreshold sodium current underlies essential functional specializations at primary auditory afferents. J Neurophysiol 99:1683-99 [PubMed]
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| 42 |
Day M, Wokosin D, Plotkin JL, Tian X, Surmeier DJ (2008) Differential excitability and modulation of striatal medium spiny neuron dendrites. J Neurosci 28:11603-14 [PubMed]
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| 43 |
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| mentions |
| 44 |
Diwakar S, Magistretti J, Goldfarb M, Naldi G, D`Angelo E (2009) Axonal Na+ channels ensure fast spike activation and back-propagation in cerebellar granule cells J Neurophysiol 101(2):519-32 [PubMed]
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| 45 |
Djurisic M, Popovic M, Carnevale N, Zecevic D (2008) Functional Structure of the Mitral Cell Dendritic Tuft in the Rat Olfactory Bulb
J. Neurosci. 28:4057-4068 [PubMed]
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| 46 |
Donohue DE, Ascoli GA (2008) A comparative computer simulation of dendritic morphology. PLoS Comput Biol 4:e1000089- [PubMed]
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| 47 |
Dyhrfjeld-Johnsen J, Morgan RJ, Foldy C, Soltesz I (2008) Upregulated h-current in hyperexcitable CA1 dendrites after febrile seizures Front in Cell Neurosci in press:1-8
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| 48 |
Gertler TS, Chan CS, Surmeier DJ (2008) Dichotomous Anatomical Properties of Adult Striatal Medium Spiny Neurons
J. Neurosci. 28(43):10814-10824
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| 49 |
Grill WM, Cantrell MB, Robertson MS (2008) Antidromic propagation of action potentials in branched axons: implications for the mechanisms of action of deep brain stimulation. J Comput Neurosci 24:81-93 [PubMed]
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| 50 |
Grunditz A, Holbro N, Tian L, Zuo Y, Oertner TG (2008) Spine Neck Plasticity Controls Postsynaptic Calcium Signals through Electrical Compartmentalization J Neurosci 28(50):13457-13466
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| 51 |
Gunay C, Edgerton JR, Jaeger D (2008) Channel density distributions explain spiking variability in the globus pallidus: a combined physiology and computer simulation database approach. J Neurosci 28:7476-91 [PubMed]
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| 52 |
Hemond P, Epstein D, Boley A, Migliore M, Ascoli GA, Jaffe DB (2008) Distinct classes of pyramidal cells exhibit mutually exclusive firing patterns in hippocampal area CA3b
Hippocampus 18(4):411-24 [PubMed]
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| 53 |
Hennig MH, Postlethwaite M, Forsythe ID, Graham BP (2008) Interactions between multiple sources of short term plasticity during evoked and spontaneous activity at the rat calyx of Held J Physiol 586(13):3129-3146 [PubMed]
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| 54 |
Hines M, Eichner H, Schuermann F (2008) Neuron splitting in compute-bound
parallel network simulations enables runtime scaling
with twice as many processors
J Comput Neurosci 25(1):203-210 [PubMed]
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| 55 |
Hines ML, Carnevale NT (2008) Translating network models to parallel hardware
in NEURON J. Neurosci. Meth. 169:425-455 [PubMed]
| submitted materials |
| 56 |
Hines ML, Markram H, Schuermann F (2008) Fully Implicit Parallel Simulation of Single Neurons
J Comp Neurosci 25:439-448 [PubMed]
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| 57 |
Huang CW, Huang CC, Lin MW, Tsai JJ, Wu SN (2008) The synergistic inhibitory actions of oxcarbazepine on voltage-gated sodium and potassium currents in differentiated NG108-15 neuronal cells and model neurons. Int J Neuropsychopharmacol 11:597-610 [PubMed]
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| 58 |
Johnson MD, McIntyre CC (2008) Quantifying the neural elements activated and inhibited by globus pallidus
deep brain stimulation J Neurophysiol 100(5):2549-2563 [PubMed]
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| 59 |
Johnston J, Griffin SJ, Baker C, Forsythe ID (2008) Kv4 (A-type) potassium currents in the mouse medial nucleus of the trapezoid body. Eur J Neurosci 27:1391-9 [PubMed]
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| 60 |
Kasabov N, Jain V, Benuskova L (2008) Integrating evolving brain-gene ontology and connectionist-based system for modeling and knowledge discovery. Neural Netw 21:266-75 [PubMed]
| mentions |
| 61 |
Lasiene J, Shupe L, Perlmutter S, Horner P (2008) No evidence for chronic demyelination in spared axons after spinal cord injury in a mouse. J Neurosci 28:3887-96 [PubMed]
| obtained materials |
| 62 |
Leao RN, Leao RM, da Costa LF, Rock Levinson S, Walmsley B (2008) A novel role for MNTB neuron dendrites in regulating action potential amplitude and cell excitability during repetitive firing. Eur J Neurosci 27:3095-108 [PubMed]
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| 63 |
Li X, Ascoli GA (2008) Effects of synaptic synchrony on the neuronal input-output relationship. Neural Comput 20:1717-31 [PubMed]
| obtained materials |
| 64 |
Lin MW, Wang YJ, Liu SI, Lin AA, Lo YC, Wu SN (2008) Characterization of aconitine-induced block of delayed rectifier K(+) current in differentiated NG108-15 neuronal cells. Neuropharmacology [PubMed]
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| 65 |
Liu YC, Wang YJ, Wu SN (2008) The mechanisms of propofol-induced block on ion currents in differentiated H9c2 cardiac cells. Eur J Pharmacol 590:93-8 [PubMed]
| both |
| 66 |
Lloyd CM, Lawson JR, Hunter PJ, Nielsen PF (2008) The CellML Model Repository. Bioinformatics [PubMed]
| mentions |
| 67 |
Lytton WW (2008) Computer modelling of epilepsy. Nat Rev Neurosci 9:626-37 [PubMed]
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| 68 |
Lytton WW, Neymotin SA, Hines ML (2008) The virtual slice setup. J Neurosci Methods 171:309-15 [PubMed]
| submitted materials |
| 69 |
Lytton WW, Omurtag A, Neymotin SA, Hines ML (2008) Just in time connectivity for large spiking networks
Neural Comput 20(11):2745-56 [PubMed]
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| 70 |
Marcelin B, Chauviere L, Becker A, Migliore M, Esclapez M, Bernard C (2008) h channel-dependent deficit of theta oscillation resonance and phase shift in temporal lobe epilepsy. Neurobiol Dis 33(3):436-447 [PubMed]
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| 71 |
Migliore M, Cannia C, Canavier CC (2008) A modeling study suggesting a possible pharmacological target to mitigate the effects of ethanol on reward-related dopaminergic signaling. J Neurophysiol 99(5):2703-2707 [PubMed]
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| 72 |
Migliore M, Shepherd GM (2008) Dendritic action potentials connect distributed dendrodendritic microcircuits J Comp Neurosci 24(2):207-221 [PubMed]
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| 73 |
Morita K (2008) Possible role of dendritic compartmentalization in the spatial working memory circuit. J Neurosci 28:7699-724 [PubMed]
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| 74 |
Morse TM (2008) Neuroinformatics: From Bioinformatics to Databasing
the Brain Bioinformatics and Biology Insights 2:259-270
| mentions |
| 75 |
Morse TM (2008) ModelDB in Computational Neuroscience Education - a research tool as interactive educational media. Interactive Educational Media for the Neural and Cognitive Sciences. Brains, Minds & Media, Lorenz S, Egelhaaf M, ed. pp.bmm1409
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| 76 |
Moustafa AA, Cohen MX, Sherman SJ, Frank MJ (2008) A Role for Dopamine in Temporal Decision Making and Reward Maximization in
Parkinsonism J. Neurosci. 28(47):12294-12304
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| 77 |
Pettersen KH, Einevoll GT (2008) Amplitude variability and extracellular low-pass filtering of neuronal spikes. Biophys J 94:784-802 [PubMed]
| obtained materials |
| 78 |
Pettersen KH, Hagen E, Einevoll GT (2008) Estimation of population firing rates and current source densities from laminar electrode recordings. J Comput Neurosci 24:291-313 [PubMed]
| obtained materials |
| 79 |
Ray S, Bhalla US (2008) PyMOOSE: Interoperable Scripting in Python for MOOSE. Front Neuroinformatics 2(6):1-16 [PubMed]
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| 80 |
Shah MM, Migliore M, Valencia I, Cooper EC, Brown DA (2008) Functional significance of axonal Kv7 channels in hippocampal pyramidal neurons. Proc Natl Acad Sci U S A 105(22):7869-7874 [PubMed]
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| 81 |
Sylantyev S, Savtchenko LP, Niu YP, Ivanov AI, Jensen TP, Kullmann DM, Xiao MY, Rusakov DA (2008) Electric fields due to synaptic currents sharpen excitatory transmission. Science 319:1845-9 [PubMed]
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| 82 |
Thomas EA, Petrou S (2008) Case for realistic modeling in understanding seizures. Expert Rev Neurother 8:1771-3 [PubMed]
| mentions |
| 83 |
Touboul J, Brette R (2008) Dynamics and bifurcations of the adaptive exponential
integrate-and-fire model Biol Cyber
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| 84 |
Veruki ML, Oltedal L, Hartveit E (2008) Electrical synapses between AII amacrine cells: dynamic range and functional consequences of variation in junctional conductance. J Neurophysiol [PubMed]
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| 85 |
Wang YJ, Chen BS, Lin MW, Lin AA, Peng H, Sung RJ, Wu SN (2008) Time-Dependent Block of Ultra-Rapid Delayed Rectifier K+ Currents by Aconitine, a Potent Cardiotoxin, in Heart-Derived H9c2 Myoblasts and in Neonatal Rat Ventricular Myocytes. Toxicol Sci 106(2):454-463 [PubMed]
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| 86 |
Zagha E, Lang EJ, Rudy B (2008) Kv3.3 channels at the Purkinje cell soma are necessary for generation of the classical complex spike waveform. J Neurosci 28:1291-300 [PubMed]
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| 87 |
Arsiero M, Luscher HR, Lundstrom BN, Giugliano M (2007) The Impact of Input Fluctuations on the Frequency-Current Relationships of Layer 5 Pyramidal Neurons in the Rat Medial Prefrontal Cortex. J Neurosci 27(12):3274-3284 [PubMed]
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| 88 |
Ascoli GA (2007) Successes and rewards in sharing digital reconstructions of neuronal morphology. Neuroinformatics 5:154-60 [PubMed]
| mentions |
| 89 |
Ascoli GA, Donohue DE, Halavi M (2007) NeuroMorpho.Org: a central resource for neuronal morphologies. J Neurosci 27:9247-51 [PubMed]
| mentions |
| 90 |
Baxter DA, Byrne JH (2007) Simulator for neural networks and action potentials. Methods Mol Biol 401:127-54 [PubMed]
| mentions |
| 91 |
Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, et al. (2007) Simulation of networks of spiking neurons: A review of tools and strategies. J Comp Neurosci 23:349-98 [PubMed]
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| 92 |
Burrell BD, Crisp KM (2007) Serotonergic modulation of afterhyperpolarization in a neuron that contributes to learning in the leech. J Neurophysiol [PubMed]
| submitted materials |
| 93 |
Calin-Jageman RJ, Tunstall MJ, Mensh BD, Katz PS, Frost WN (2007) Parameter space analysis suggests multi-site plasticity contributes to motor pattern initiation in Tritonia. J Neurophysiol 98(4):2382-98 [PubMed]
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| 94 |
Cannon RC, Gewaltig MO, Gleeson P, Bhalla US, Cornelis H, Hines ML, Howell FW, Muller E, Stil (2007) Interoperability of neuroscience modeling software: current status and future directions. Neuroinformatics 5:127-38 [PubMed]
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| 95 |
Coombes S, Timofeeva Y, Svensson CM, Lord GJ, Josie K, Cox SJ, Colbert CM (2007) Branching dendrites with resonant membrane: a "sum-over-trips" approach. Biol Cybern 97:137-49 [PubMed]
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| 96 |
Cornelisse LN, van Elburg RAJ, Meredith RM, Yuste R, Mansvelder HD (2007) High Speed Two-Photon Imaging of Calcium Dynamics in Dendritic Spines: Consequences for Spine Calcium Kinetics and Buffer Capacity. PLoS ONE 2(10):e1073- [PubMed]
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| 97 |
Crasto CJ, Marenco LN, Liu N, Morse TM, Cheung KH, Lai PC, Bahl G, Masiar P, Lam HY, Lim E, C (2007) SenseLab: new developments in disseminating neuroscience information. Brief Bioinform 8:150-62 [PubMed]
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| 98 |
Crasto CJ, Shepherd GM (2007) Managing knowledge in neuroscience. Methods Mol Biol 401:3-21 [PubMed]
| mentions |
| 99 |
Dyhrfjeld-Johnsen J, Santhakumar V, Morgan RJ, Huerta R, Tsimring L, Soltesz I (2007) Topological determinants of epileptogenesis in large-scale structural and functional models of the dentate gyrus derived from experimental data. J Neurophysiol 97:1566-87 [PubMed]
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| 100 |
Garcia-Lazaro JA, Ho SS, Nair A, Schnupp JW (2007) Shifting and scaling adaptation to dynamic stimuli in somatosensory cortex. Eur J Neurosci 26:2359-68 [PubMed]
| obtained materials |
| 101 |
Gleeson P, Steuber V, Silver RA (2007) neuroConstruct: a tool for modeling networks of neurons in 3D space. Neuron 54:219-35 [PubMed]
| obtained materials |
| 102 |
Gold C, Henze DA, Koch C (2007) Using Extracellular Action Potential Recordings to Tune Compartmental Models. Journal of Computational Neuroscience 23:39-58 [PubMed]
| submitted materials |
| 103 |
Hines ML, Morse TM, Carnevale NT (2007) Book chapter, Model structure analysis in NEURON : toward interoperability among neural simulators. Methods Mol Biol 401:91-102 [PubMed]
| mentions |
| 104 |
Jones SR, Pritchett DL, Stufflebeam SM, Hamalainen M, Moore CI (2007) Neural correlates of tactile detection: a combined magnetoencephalography and biophysically based computational modeling study. J Neurosci 27:10751-64 [PubMed]
| both |
| 105 |
Karbowski J, Schindelman G, Cronin CJ, Seah A, Sternberg PW (2007) Systems level circuit model of C. elegans undulatory locomotion: mathematical modeling and molecular genetics. J Comput Neurosci [PubMed]
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| 106 |
Kole MH, Brauer AU, Stuart GJ (2007) Inherited cortical HCN1 channel loss amplifies dendritic calcium electrogenesis and burst firing in a rat absence epilepsy model. J Physiol 578:507-25 [PubMed]
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Kretzberg J, Kretschmer F, Marin-Burgin A (2007) Effects of multiple spike-initiation zones in touch sensory cells of the leech
, Volume 70, Issues 10-12, June 2007, Pages 1645-1651
Neurocomputing 70:1645-1651
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| 108 |
Kulagina IB, Korogod SM, Horcholle-Bossavitt G, Batini C, Tyc-Dumont S (2007) The electro-dynamics of the dendritic space in Purkinje cells of the cerebellum. Arch Ital Biol 145:211-33 [PubMed]
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| 109 |
Liu N, Marenco L, Miller PL (2007) ResourceLog: an embeddable tool for dynamically monitoring the usage of web-based bioscience resources. J Am Med Inform Assoc 13:432-7 [PubMed]
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Matveev V, Bose A, Nadim F (2007) Capturing the bursting dynamics of a two-cell inhibitory network using a one-dimensional map. J Comput Neurosci 23:169-87 [PubMed]
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| 111 |
Migliore M, Inzirillo C, Shepherd GM (2007) Learning mechanism for column formation in the olfactory bulb. Front Integr Neurosci 1:12- [PubMed]
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Morgan RJ, Santhakumar V, Soltesz I (2007) Modeling the dentate gyrus. Prog Brain Res 163:639-58 [PubMed]
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| 113 |
Postlethwaite M, Hennig MH, Steinert JR, Graham BP, Forsythe ID (2007) Acceleration of AMPA receptor kinetics underlies temperature-dependent changes in synaptic strength at the rat calyx of Held. J Physiol 579:69-84 [PubMed]
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Ramasamy L, Sperelakis N (2007) Cable properties and propagation velocity in a long single chain of simulated myocardial cells. Theor Biol Med Model 4:36- [PubMed]
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Sakurai A, Calin-Jageman RJ, Katz PS (2007) Potentiation phase of spike timing-dependent neuromodulation by a serotonergic interneuron involves an increase in the fraction of transmitter release. J Neurophysiol 98:1975-87 [PubMed]
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| 116 |
Scuri R, Lombardo P, Cataldo E, Ristori C, Brunelli M (2007) Inhibition of Na+-K+ ATPase potentiates synaptic transmission in tactile sensory neurons of the leech. Eur J Neurosci 25:159-67 [PubMed]
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Stiefel KM, Sejnowski TJ (2007) Mapping Function onto Neuronal Morphology. J Neurophysiol 98:513-526 [PubMed]
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| 118 |
Wada K, Sakaguchi Y (2007) Repetitive firing of a model motoneuron: inhibitory effect of a Ca2+-activated potassium conductance on the slope of the frequency-current relationship. Neurosci Res 57:259-67 [PubMed]
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| 119 |
Zaika O, Tolstykh GP, Jaffe DB, Shapiro MS (2007) Inositol triphosphate-mediated Ca2+ signals direct purinergic P2Y receptor regulation of neuronal ion channels. J Neurosci 27:8914-26 [PubMed]
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| 120 |
Akemann W, Knopfel T (2006) Interaction of Kv3 potassium channels and resurgent sodium current influences the rate of spontaneous firing of Purkinje neurons. J Neurosci 26:4602-12 [PubMed]
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| 121 |
Ascoli GA, Scorcioni R (2006) Neuron and Network Modeling Neuroanatomical Tract-Tracing 3, Zaborszky L, Wouterlood FG, Lanciego JL, ed. pp.604
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| 122 |
Bathellier B, Lagier S, Faure P, Lledo PM (2006) Circuit properties generating gamma oscillations in a network model of the olfactory bulb. J Neurophysiol 95:2678-91 [PubMed]
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| 123 |
Baxter DA, Byrne JH (2007) Short-term plasticity in a computational model of the tail-withdrawal circuit in Aplysia Neurocomputing 70(10-12):1993-1999
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| 124 |
Cannon RC, D'Alessandro G (2006) The ion channel inverse problem: neuroinformatics meets biophysics. PLoS Comput Biol 2:e91-92
| mentions |
| 125 |
Cataldo E, Byrne JH, Baxter DA (2006) Computational Model of a Central Pattern Generator CMSB 2006, Lecture Notes in Bioinformatics LNBI 4210, Priami C, ed. pp.242
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| 126 |
Davison AP, Fregnac Y (2006) Learning Cross-Modal Spatial Transformations through Spike Timing-Dependent
Plasticity
J Neurosci 26:5604-5615 [PubMed]
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Eberhard JP, Wanner A, Wittum G (2006) NeuGen: a tool for the generation of realistic morphology of cortical neurons and neural networks in 3D Neurocomputing 70:327-342
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| 128 |
Graham BP, Lauchlan K, McLean DR (2006) Dynamics of outgrowth in a continuum model of neurite elongation. J Comput Neurosci 20:43-60 [PubMed]
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| 129 |
Kole MH, Hallermann S, Stuart GJ (2006) Single Ih channels in pyramidal neuron dendrites: properties, distribution, and impact on action potential output. J Neurosci 26:1677-87 [PubMed]
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| 130 |
Kuba H, Ishii TM, Ohmori H (2006) Axonal site of spike initiation enhances auditory coincidence detection. Nature 444:1069-72 [PubMed]
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| 131 |
Li X, Ascoli GA (2006) Computational simulation of the input-output relationship in hippocampal pyramidal cells J of Comput Neurosci 21(2):191-209 [PubMed]
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| 132 |
Lytton WW (2006) Neural Query System: Data-mining from within the NEURON simulator. Neuroinformatics 4:163-76 [PubMed]
| obtained materials |
| 133 |
Migliore M, Cannia C, Lytton WW, Markram H, Hines ML (2006) Parallel Network Simulations with NEURON. J Comp Neurosci 21:110-119 [PubMed]
| both |
| 134 |
Murakami S, Okada Y (2006) Contributions of principal neocortical neurons to magnetoencephalography and electroencephalography signals. J Physiol 575:925-36 [PubMed]
| obtained materials |
| 135 |
Saftenku EE (2006) Presumed Mechanisms of a Long-Term Increase in the Intrinsic Excitability of Cerebellar Granule Cells: a Model Study Neirofiziologiya/Neurophysiology 38(2):101-110
| obtained materials |
| 136 |
Wang YJ, Sung RJ, Lin MW, Wu SN (2006) Contribution of BK(Ca)-channel activity in human cardiac fibroblasts to electrical coupling of cardiomyocytes-fibroblasts. J Membr Biol 213:175-85 [PubMed]
| obtained materials |
| 137 |
Weaver CM, Wearne SL (2006) The role of action potential shape and parameter constraints in optimization of compartment models Neurocomputing 69:1053-1057
| obtained materials |
| 138 |
Yokawa K,Nishimura T (2006) Book Chapter, An electrical stimulation on retinal ganglion cell for retinal prosthesis based on CMOS image sensor: A study of electrophysiological simulation
IFMBE Proceedings, World Congress on Medical Physics and Biomedical Engineering 2006 Part 23
| mentions |
| 139 |
Zaika O, Lara L, Gamper N, Hilgemann DW, Jaffe DB, Shapiro MS (2006) Angiotensin II regulates neuronal excitability via phosphatidylinositol 4,5-bisphosphate-dependent modulation of Kv7 (M-type) K+ channels. J. Physiol. 575:49-67 [PubMed]
| obtained materials |
| 140 |
van Welie I, Remme MW, van Hooft JA, Wadman WJ (2006) Different levels of Ih determine distinct temporal integration in bursting and regular-spiking neurons in rat subiculum. J Physiol 576:203-214 [PubMed]
| submitted materials |
| 141 |
Brette R, Gerstner W (2005) Adaptive exponential integrate-and-fire model as an effective description of neuronal activity. J Neurophysiol 94:3637-42 [PubMed]
| obtained materials |
| 142 |
Brown KM, Donohue DE, D`Alessandro G, Ascoli GA (2005) A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks. Neuroinformatics 3:343-60
| mentions |
| 143 |
Bug W (2005) The impact of the NIH public access policy on literature informatics: What role can the neuroinformaticists play? Neuroinformatics 3:81-91 [PubMed]
| mentions |
| 144 |
Cataldo E, Brunelli M, Byrne JH, Av-Ron E, Cai Y, Baxter DA (2005) Computational Model of Touch Sensory Cells (T Cells) of the Leech: Role of the Afterhyperpolarization (AHP) in Activity-Dependent Conduction Failure Journal of Computational Neuroscience 18:5-24 [PubMed]
| submitted materials |
| 145 |
Dyhrfjeld-Johnsen J, Maier J, Schubert D, Staiger J, Luhmann HJ, Stephan KE, Kotter R (2005) CoCoDat: a database system for organizing and selecting quantitative data on single neurons and neuronal microcircuitry. J Neurosci Methods 141:291-308 [PubMed]
| mentions |
| 146 |
Hossain WA, Antic SD, Yang Y, Rasband MN, Morest DK (2005) Where is the spike generator of the cochlear nerve? Voltage-gated sodium channels in the mouse cochlea. J Neurosci 25:6857-68 [PubMed]
| obtained materials |
| 147 |
Lazarewicz M, Das S, Finkel LH (2005) Recognition of temporal event sequences by a network of cortical neurons Neurocomputing 65-66:143-151
| obtained materials |
| 148 |
Lytton WW, Hines ML (2005) Independent variable time-step integration of individual neurons for network simulations. Neural Comput 17:903-21 [PubMed]
| both |
| 149 |
Migliore M, Ferrante M, Ascoli GA (2005) Signal propagation in oblique dendrites of CA1 pyramidal cells. J Neurophysiol 94:4145-4155 [PubMed]
| submitted materials |
| 150 |
Migliore M, Hines ML, Shepherd GM (2005) The role of distal dendritic gap junctions in synchronization of mitral cell axonal output. J Comp Neurosci 18:151-161 [PubMed]
| submitted materials |
| 151 |
Migliore M, Shepherd GM (2005) Opinion: an integrated approach to classifying neuronal phenotypes. Nat Rev Neurosci 6:810-8 [PubMed]
| obtained materials |
| 152 |
Moss BL, Fuller AD, Sahley CL, Burrell BD (2005) Serotonin modulates axo-axonal coupling between neurons critical for learning in the leech J Neurophysiol 94(4):2575-89 [PubMed]
| submitted materials |
| 153 |
Otake M, Takagi T (2005) Reassembly and interfacing neural models registered on biological model databases. Genome Inform 16:76-85 [PubMed]
| obtained materials |
| 154 |
Saghatelyan A,Roux P,Migliore M,Rochefort C,Desmaisons D,Charneau P,Shepherd GM, Lledo PM (2005) Activity-dependent adjustments of the inhibitory network in the olfactory bulb following early postnatal deprivation. Neuron 46:103-116 [PubMed]
| submitted materials |
| 155 |
Santhakumar V, Aradi I, Soltesz I (2005) Role of mossy fiber sprouting and mossy cell loss in hyperexcitability: a network model of the dentate gyrus incorporating cell types and axonal topography. J Neurophysiol 93:437-53 [PubMed]
| obtained materials |
| 156 |
Sengupta B (2005) Book Chapter, Modeling of Short-Term Synaptic Plasticity Using Dynamic Synapses Lecture Notes in Computer Science, Advances in Natural Computation
| obtained materials |
| 157 |
Shapshak P, Minagar A, Duran EM, Ziegler F, Davis W, Seth R, Kazic T (2005) Chapter 16, Gene Expression in HIV-Associated Dementia Current Clinical Neurology, Inflammatory Disorders of the Nervous System, Minagar A, Alexander JS, ed.
| mentions |
| 158 |
Sikora MA, Gottesman J, Miller RF (2005) A computational model of the ribbon synapse. J Neurosci Methods 145:47-61 [PubMed]
| submitted materials |
| 159 |
Trevelyan AJ, Watkinson O (2005) Does inhibition balance excitation in neocortex? Prog Biophys Mol Biol 87:109-43 [PubMed]
| obtained materials |
| 160 |
Wu SN, Chang HD (2005) Diethyl pyrocarbonate, a histidine-modifying agent, directly stimulates activity of ATP-sensitive potassium channels in pituitary GH(3) cells. Biochem Pharmacol [PubMed]
| submitted materials |
| 161 |
Aradi I, Maccaferri G (2004) Cell type-specific synaptic dynamics of synchronized bursting in the juvenile CA3 rat hippocampus. J Neurosci 24:9681-92 [PubMed]
| obtained materials |
| 162 |
Davison A (2004) Biologically-detailed network modelling (Chapter 10) Computation Neuroscience: A Comprehensive Approach, Feng J, ed. pp.287
| mentions |
| 163 |
Davison AP, Morse TM, Migliore M, Shepherd GM, Hines ML (2004) Semi-automated population of an online database of neuronal models (ModelDB) with citation information, using PubMed for validation. Neuroinformatics 2:327-32
| mentions |
| 164 |
Djurisic M, Antic S, Chen WR, Zecevic D (2004) Voltage imaging from dendrites of mitral cells: EPSP attenuation and spike trigger zones. J Neurosci 24:6703-14 [PubMed]
| submitted materials |
| 165 |
Gasparini S, Migliore M, Magee JC (2004) On the initiation and propagation of dendritic spikes in CA1 pyramidal neurons. J Neurosci 24:11046-11056 [PubMed]
| both |
| 166 |
Heilman AD, Quattrochi J (2004) Computational models of epileptiform activity in single neurons. Biosystems 78:1-21 [PubMed]
| obtained materials |
| 167 |
Hines ML, Carnevale NT (2004) Discrete event simulation in the
NEURON environment Neurocomputing 58-60:1117-1122
| mentions |
| 168 |
Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM (2004) ModelDB: A Database to Support Computational Neuroscience. J Comput Neurosci 17:7-11 [PubMed]
| mentions |
| 169 |
Maurice N, Mercer J, Chan CS, Hernandez-Lopez S, Held J, Tkatch T, Surmeier DJ (2004) D2 dopamine receptor-mediated modulation of voltage-dependent Na+ channels reduces autonomous activity in striatal cholinergic interneurons. J Neurosci 24:10289-301 [PubMed]
| both |
| 170 |
Richmond B (2004) Editorial Commentary J. Comp. Neurosci. 17(1):1-1
| mentions |
| 171 |
Sterratt DC, van Ooyen A (2004) Does a dendritic democracy need a ruler? Neurocomputing 58:437-442
| obtained materials |
| 172 |
Crasto CJ, Marenco LN, Migliore M, Mao B, Nadkarni PM, Miller P, Shepherd GM (2003) Text mining neuroscience journal articles to populate neuroscience databases. Neuroinformatics 1:215-37 [PubMed]
| mentions |
| 173 |
D'Alessandro G (2003) Axiope: data sharing using distributed catalogs. Neuroinformatics 1:285-8 [PubMed]
| mentions |
| 174 |
Davison AP, Feng J, Brown D (2003) Dendrodendritic inhibition and simulated odor responses in a detailed olfactory bulb network model. J Neurophysiol 90:1921-1935 [PubMed]
| submitted materials |
| 175 |
Graham LJ (2003) ModelDB, neuroinformatics, and computational neuroscience. Neuroinformatics 1:141-4 [PubMed]
| mentions |
| 176 |
Marenco L, Tosches N, Crasto C, Shepherd G, Miller PL, Nadkarni PM (2003) Achieving evolvable Web-database bioscience applications using the EAV-CR framework: recent advances. J Am Med Inform Assoc 10:444-53 [PubMed]
| mentions |
| 177 |
Migliore M (2003) On the Integration of Subthreshold Inputs from Perforant Path and Schaffer Collaterals in Hippocampal CA1 Pyramidal Neurons. J Comput Neurosci 14:185-192 [PubMed]
| submitted materials |
| 178 |
Migliore M, Morse TM, Davison AP, Marenco L, Shepherd GM, Hines ML (2003) ModelDB: making models publicly accessible to support computational neuroscience. Neuroinformatics 1:135-9 [PubMed]
| mentions |
| 179 |
Migliore M, Shepherd GM (2002) Emerging rules for the distributions of active dendritic conductances. Nature Review Neuroscience 3:362-70 [PubMed]
| submitted materials |
| 180 |
Watanabe S, Hoffman DA, Migliore M, Johnston D (2002) Dendritic K+ channels contribute to spike-timing dependent long-term potentiation in hippocampal pyramidal neurons. Proc Natl Acad Sci U S A 99:8366-8371 [PubMed]
| both |
| 181 |
Chemin J, Monteil A, Bourinet E, Nargeot J, Lory P (2001) Alternatively spliced alpha(1G) (Ca(V)3.1) intracellular loops promote specific T-type Ca(2+) channel gating properties. Biophys J 80:1238-50 [PubMed]
| obtained materials |
| 182 |
Migliore M, Messineo L, Cardaci M, Ayala GF (2001) Quantitative modeling of perception and production of time intervals. J Neurophysiol 86:2754-60 [PubMed]
| submitted materials |
| 183 |
Mirsky JS, Nadkarni PM, Healy MD, Miller PL, Shepherd GM (1998) Database tools for integrating and searching membrane property data correlated with neuronal morphology. J Neurosci Methods 82:105-21 [PubMed]
| mentions |
| 184 |
Shepherd GM, Mirsky JS, Healy MD, Singer MS, Skoufos E, Hines MS, Nadkarni PM, Miller PL (1998) The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data. Trends Neurosci 21:460-8 [PubMed]
| mentions |
| 185 |
Peterson BE, Healy MD, Nadkarni PM, Miller PL, Shepherd GM (1996) ModelDB: an environment for running and storing computational models and their results applied to neuroscience. J Am Med Inform Assoc 3:389-98 [PubMed]
| mentions |
