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Papers that obtained or contributed code in ModelDB

These papers state (in text) they used or contributed code to ModelDB or both
or they mention ModelDB in a neuroinformatics infrastructure context.

1 Andreev VP (2013) Cytoplasmic electric fields and electroosmosis: possible solution for the paradoxes of the intracellular transport of biomolecules PLoS One 8(4):e61884 submitted materials
2 Brunner J, Ster J, Van-Weert S, Andrasi T, Neubrandt M, Corti C, Corsi M, Ferraguti F, Gerber (2013) Selective Silencing of Individual Dendritic Branches by an mGlu2-Activated Potassium Conductance in Dentate Gyrus Granule Cells. J Neurosci 33:7285-98 [PubMed] obtained materials
3 Chiu CQ, Lur G, Morse TM, Carnevale NT, Ellis-Davies G, Higley MJ (2013) Compartmentalization of GABAergic inhibition by dendritic spines Science 340:759-762 submitted materials
4 Conde-Sousa E, Aguiar P (2013) A working memory model for serial order that stores information in the intrinsic excitability properties of neurons J Comp Neurosci [PubMed] submitted materials
5 Costa RP, Sjöström PJ, van Rossum MC (2013) Probabilistic Inference of Short-Term Synaptic Plasticity in Neocortical Microcircuits Front. Comput. Neurosci. submitted materials
6 Ellis M, Chambers JD, Gwynne RM, Bornstein JC (2013) Serotonin (5-HT) and cholecystokinin (CCK) mediate nutrient induced segmentation in guinea pig small intestine. Am J Physiol Gastrointest Liver Physiol [PubMed] obtained materials
7 Ferrante M, Migliore M, Ascoli GA (2013) Functional Impact of Dendritic Branch-Point Morphology J. Neurosci. 33:2156-2165 submitted materials
8 Garrido JA, Ros E, D`Angelo E (2013) Spike timing regulation on the millisecond scale by distributed synaptic plasticity at the cerebellum input stage: a simulation study Front. Comput. Neurosci. submitted materials
9 Hay E, Schurmann F, Markram H, Segev I (2013) Preserving Axo-somatic Spiking Features Despite Diverse Dendritic Morphology. J Neurophysiol [PubMed] submitted materials
10 Hituri K, Linne ML (2013) Comparison of Models for IP3 Receptor Kinetics Using Stochastic Simulations. PLoS One 8:e59618 [PubMed] submitted materials
11 Kerr CC, Van Albada SJ, Neymotin SA, Chadderdon GL, Robinson PA, Lytton WW (2013) Cortical information flow in Parkinson's disease: a composite network-field model. Front Comput Neurosci [PubMed] submitted materials
12 Li X, Morita K, Robinson HP, Small M (2013) Control of layer 5 pyramidal cell spiking by oscillatory inhibition in the distal apical dendrites: a computational modelling study. J Neurophysiol 109(11):2739-2756 [PubMed] obtained materials
13 Mai Z, Liu H (2013) Random parameter sampling of a generic three-tier MAPK cascade model reveals major factors affecting its versatile dynamics PLoS ONE 8(1):e54441 submitted materials
14 Nicola W, Campbell SA (2013) Bifurcations of large networks of two-dimensional integrate and fire neurons. J Comput Neurosci [PubMed] submitted materials
15 Ovsepian SV, Steuber V, Le Berre M, O A defined heteromeric KV1 channel stabilizes the intrinsic pacemaking and regulates the output of deep cerebellar nuclear neurons to thalamic targets. J Physiol 591:1771-91 [PubMed] submitted materials
16 Parekh R, Ascoli GA (2013) Neuronal morphology goes digital: a research hub for cellular and system neuroscience. Neuron 77:1017-38 [PubMed] mentions
17 Pilly PK, Grossberg S (2013) Spiking neurons in a hierarchical self-organizing map model can learn to develop spatial and temporal properties of entorhinal grid cells and hippocampal place cells PLOS One 8(4):e60599 submitted materials
18 Rowan MS,Neymotin SA (2013) Synaptic Scaling Balances Learning in a Spiking Model of Neocortex Lect. Notes in Comp. Sci., Proc. of the 11th Intern. Conf. on Adaptive and Natural Computing Algor. submitted materials
19 Stiefel KM, Englitz B, Sejnowski TJ (2013) Origin of intrinsic irregular firing in cortical interneurons. Proc Natl Acad Sci U S A 110:7886-91 [PubMed] submitted materials
20 Thomas EA, Petrou S (2013) Network-specific mechanisms may explain the paradoxical effects of carbamazepine and phenytoin. Epilepsia [PubMed] both
21 Waltemath D, Henkel R, Halke R, Scharm M, Wolkenhauer O (2013) Improving the reuse of computational models through version control. Bioinformatics [PubMed] mentions
22 Amatrudo JM, Weaver CM, Crimins JL, Hof PR, Rosene DL, Luebke JI (2012) Influence of highly distinctive structural properties on the excitability of pyramidal neurons in monkey visual and prefrontal cortices J. Neurosci, submitted materials
23 Antunes G, De Schutter E (2012) A stochastic signaling network mediates the probabilistic induction of cerebellar long-term depression J. Neurosci. 32:9288-9300 [PubMed] submitted materials
24 Bahl A, Stemmler MB, Herz AV, Roth A (2012) Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data. J Neurosci Methods 210:22-34 [PubMed] both
25 Bedard C, Behuret S, Deleuze C, Bal T, Destexhe A (2012) Oversampling method to extract excitatory and inhibitory conductances from single-trial membrane potential recordings Journal of Neuroscience Methods 210(1):3-14 [PubMed] submitted materials
26 Berzhanskaya J, Chernyy N, Gluckman BJ, Schiff SJ, Ascoli GA (2012) Modulation of hippocampal rhythms by subthreshold electric fields and network topology. J Comput Neurosci [PubMed] both
27 Bianchi D, Marasco A, Limongiello A, Marchetti C, Marie H, Tirozzi B, Migliore M (2012) On the mechanisms underlying the depolarization block in the spiking dynamics of CA1 pyramidal neurons J Comput. Neurosci. both
28 Birdno MJ, Kuncel AM, Dorval AD, Turner DA, Gross RE, Grill WM (2012) Stimulus features underlying reduced tremor suppression with temporally patterned deep brain stimulation. J Neurophysiol 107:364-83 [PubMed] submitted materials
29 Boucher PA, Joós B, Morris CE (2012) Coupled left-shift of Nav channels: modeling the Na(+)-loading and dysfunctional excitability of damaged axons J Comput Neurosci. [PubMed] submitted materials
30 Briley PM, Kitterick PT, Summerfield AQ (2012) Evidence for opponent-process analysis of sound-source location in humans Journal of the Association for Research in Otolaryngology epub:1-19 [PubMed] submitted materials
31 Carter ME, Brill J, Bonnavion P, Huguenard JR, Huerta R, de Lecea, L (2012) Mechanism for Hypocretin-mediated sleep-to-wake transitions PNAS submitted materials
32 Chadderdon GL, Neymotin SA, Kerr CC, Lytton WW (2012) Reinforcement learning of targeted movement in a spiking neuronal model of motor cortex PLoS ONE 2012 7(10):e47251 submitted materials
33 Chambers JD, Bethwaite B, Diamond NT, Peachey T, Abramson D, Petrou S, Thomas EA (2012) Parametric computation predicts a multiplicative interaction between synaptic strength parameters that control gamma oscillations. 6:53. Epub 2012 Jul 24. Front Comput Neurosci. 6:53:1-12 [PubMed] both
34 Culmone V, Migliore M (2012) Progressive effect of beta amyloid peptides accumulation on CA1 pyramidal neurons: a model study suggesting possible treatments Front Comput Neurosci [PubMed] both
35 Evans RC, Morera-Herreras T, Cui Y, Du K, Sheehan T, Kotaleski JH, Venance L, Blackwell KT (2012) The effects of NMDA subunit composition on calcium influx and spike timing-dependent plasticity in striatal medium spiny neurons. PLoS Comput Biol 8:e1002493 [PubMed] submitted materials
36 Fineberg JD, Ritter DM, Covarrubias M (2012) Modeling-independent elucidation of inactivation pathways in recombinant and native A-type Kv channels J Gen Physiol 140:513-527 submitted materials
37 Foutz TJ, Arlow RL, McIntyre CC (2012) Theoretical principles underlying optical stimulation of a channelrhodopsin-2 positive pyramidal neuron J Neurophysiol., Epub ahead of print 107:3235-45 [PubMed] obtained materials
38 Goldwyn JH, Rubinstein JT, Shea-Brown E (2012) A point process framework for modeling electrical stimulation of the auditory nerve J Neurophysiol 108:1430-1452 [PubMed] submitted materials
39 Gulledge AT, Carnevale NT, Stuart GJ (2012) Electrical advantages of dendritic spines PLoS One. 7(4):e36007 [PubMed] obtained materials
40 Jones PW, Gabbiani F (2012) Impact of Neural Noise on a Sensory-Motor Pathway Signaling Impending Collision. J Neurophysiol 107:1067-1079 [PubMed] submitted materials
41 Jones PW, Gabbiani F (2012) Logarithmic Compression of Sensory Signals within the Dendritic Tree of a Collision-Sensitive Neuron J Neurosci 32(14):4923-4934 submitted materials
42 Kerr CC, Neymotin SA, Chadderdon GL, Fietkiewicz CT, Francis JT, Lytton WW (2012) Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex IEEE Transactions on Neural Systems & Rehabilitation Engineering 20(2):153-60 [PubMed] submitted materials
43 Kim JK, Forger DB (2012) A mechanism for robust circadian timekeeping via balanced stoichiometry Molecular Systems Biology 8:630:1-14 [PubMed] submitted materials
44 Lewin N, Aksay E, Clancy CE (2012) Computational Modeling Reveals Dendritic Origins of GABA(A)-Mediated Excitation in CA1 Pyramidal Neurons. PLoS One 7:e47250 [PubMed] submitted materials
45 Marasco A, Limongiello A, Migliore M (2012) Fast and accurate low-dimensional reduction of biophysically detailed neuron models Scientific Reports 2:928:1-7 [PubMed] submitted materials
46 Masquelier T (2012) Relative spike time coding and STDP-based orientation selectivity in the early visual system in natural continuous and saccadic vision: a computational model J Comput Neurosci 32(3):425-41 [PubMed] submitted materials
47 McTavish TS, Migliore M, Shepherd GM, Hines ML (2012) Mitral cell spike synchrony modulated by dendrodendritic synapse location Frontiers in Computational Neuroscience 6:3 submitted materials
48 Mechler F, Victor JD (2012) Dipole characterization of single neurons from their extracellular action potentials. J Comput Neurosci 32:73-100 [PubMed] submitted materials
49 Moradi K, Moradi K, Ganjkhani M, Hajihasani M, Gharibzadeh S, Kaka G (2012) A fast model of voltage-dependent NMDA receptors J Comput Neurosci [PubMed] submitted materials
50 Munro E, Kopell N (2012) Subthreshold somatic voltage in neocortical pyramidal cells can control whether spikes propagate from the axonal plexus to axon terminals: a model study J. Neurophysiol. submitted materials
51 O`Connor S, Angelo K, Jacob TJC (2012) Burst firing versus synchrony in a gap junction connected olfactory bulb mitral cell network model. 6:75. Frontiers in Computational Neuroscience 6:75:1-18 obtained materials
52 Orio P, Parra A, Madrid R, Gonzalez O, Belmonte C, Viana F (2012) Role of Ih in the firing pattern of mammalian cold thermoreceptor endings J Neurophysiol [PubMed] submitted materials
53 Orio P, Soudry D (2012) Simple, fast and accurate implementation of the diffusion approximation algorithm for stochastic ion channels with multiple States PLoS One 7(5):e36670 [PubMed] submitted materials
54 Popovic MA, Gao X, Carnevale NT, Zecevic D (2012) Cortical Dendritic Spine Heads Are Not Electrically Isolated by the Spine Neck from Membrane Potential Signals in Parent Dendrites. Cereb Cortex [PubMed] submitted materials
55 Powers BE, Lasiene J, Plemel JR, Shupe L, Perlmutter SI, Tetzlaff W, Horner PJ (2012) Axonal Thinning and Extensive Remyelination without Chronic Demyelination in Spinal Injured Rats J. Neurosci. 32(15):5120-5125 obtained materials
56 Schmandt N, Galan RF (2012) Stochastic-shielding approximation of Markov chains and its application to efficiently simulate random ion-channel gating Phys Rev Lett 109:118101 [PubMed] submitted materials
57 Sedigh-Sarvestani M, Schiff S, Gluckman B (2012) Reconstructing Mammalian Sleep Dynamics with Data Assimiliation PLoS Comp Biol 8(11):e1002788 [PubMed] submitted materials
58 Shushruth S, Mangapathy P, Ichida JM, Bressloff PC, Schwabe L, Angelucci A (2012) Strong recurrent networks compute the orientation tuning of surround modulation in the primate primary visual cortex. J Neurosci 32:308-21 [PubMed] submitted materials
59 Sidiropoulou K, Poirazi P (2012) Predictive Features of Persistent Activity Emergence in Regular Spiking and Intrinsic Bursting Model Neurons Plos Computational Biology 8(4):e1002489 [PubMed] submitted materials
60 Song W, Xiao Y, Chen H, Ashpole NM, Piekarz AD, Ma P, Hudmon A, Cummins TR, Shou W (2012) The human Nav1.5 F1486 deletion associated with long QT syndrome leads to impaired sodium channel inactivation and reduced lidocaine sensitivity. J Physiol [PubMed] obtained materials
61 Sterratt DC, Groen MR, Meredith RM, van Ooyen A (2012) Spine calcium transients induced by synaptically-evoked action potentials can predict synapse location and establish synaptic democracy PLoS Comput Biol 8(6):e1002545 [PubMed] submitted materials
62 Torben-Nielsen B, Segev I, Yarom Y (2012) The generation of phase differences and frequency changes in a network model of inferior olive subthreshold oscillations. PLoS Comput Biol 8:e1002580 [PubMed] submitted materials
63 Varela JA, Wang J, Christianson JP, Maier SF, Cooper DC (2012) Control over Stress, But Not Stress Per Se Increases Prefrontal Cortical Pyramidal Neuron Excitability The Journal of Neuroscience 32(37):12848-12853 obtained materials
64 Yarrow S, Challis E, Series P (2012) Fisher and Shannon information in finite neural populations. Neural Computation 24:1740-80 [PubMed] submitted materials
65 Zilli EA (2012) Models of grid cell spatial firing published 2005-2011. Front Neural Circuits 6:16 [PubMed] submitted materials
66 de Almeida LB, Idiart MA, Linster C (2012) A model of cholinergic modulation in olfactory bulb and piriform cortex. J Neurophysiol [PubMed] submitted materials
67 de Kamps M (2012) Towards truly human-level intelligence in artificial applications Cognitive Systems Research 14(1):1-9 mentions
68 Anderson WD, Galván EJ, Mauna JC, Thiels E, Barrionuevo G (2011) Properties and functional implications of Ih in hippocampal area CA3 interneurons Pflugers Archives, submitted [PubMed] submitted materials
69 Beverlin B, Kakalios J, Nykamp D, Netoff TI (2011) Dynamical changes in neurons during seizures determine tonic to clonic shift. J Comput Neurosci [PubMed] submitted materials
70 Bol K, Marsat G, Harvey-Girard E, Longtin A, Maler L (2011) Frequency-Tuned Cerebellar Channels and Burst-Induced LTD Lead to the Cancellation of Redundant Sensory Inputs. J Neurosci 31:11028-38 [PubMed] submitted materials
71 Brown SA, Moraru II, Schaff JC, Loew LM (2011) Virtual NEURON: a strategy for merged biochemical and electrophysiological modeling. J Comput Neurosci [PubMed] submitted materials
72 Casale AE, McCormick DA (2011) Active action potential propagation but not initiation in thalamic interneuron dendrites. J Neurosci 31:18289-302 [PubMed] submitted materials
73 Case M, Soltesz I (2011) Computational modeling of epilepsy. Epilepsia 52 Suppl 8:12-5 [PubMed] mentions
74 Castro L, Aguiar P (2011) Phase precession through acceleration of local theta rhythm: a biophysical model for the interaction between place cells and local inhibitory neurons J Comput Neurosci. [PubMed] submitted materials
75 Chambers JD, Bornstein JC, Thomas EA (2011) Multiple Neural Oscillators and Muscle Feedback Are Required for the Intestinal Fed State Motor Program PLoS ONE 6(5):e119597-. submitted materials
76 Diwakar S, Lombardo P, Solinas S, Naldi G, D`Angelo E (2011) Local field potential modeling predicts dense activation in cerebellar granule cells clusters under LTP and LTD control PLoS ONE 6(7):e21928 submitted materials
77 Doloc-Mihu A, Calabrese RL (2011) A database of computational models of a half-center oscillator for analyzing how neuronal parameters influence network activity J Biol Phys. 37(3):263-83 [PubMed] mentions
78 Doyon N, Prescott SA, Castonguay A, Godin AG, Kroger H, De Koninck Y (2011) Efficacy of synaptic inhibition depends on multiple, dynamically interacting mechanisms implicated in chloride homeostasis. PLoS Comput Biol 7:e1002149-9 [PubMed] submitted materials
79 Edgerton JR, Jaeger D (2011) Dendritic Sodium Channels Promote Active Decorrelation and Reduce Phase Locking to Parkinsonian Input Oscillations in Model Globus Pallidus Neurons J. Neurosci. 31:10919-10936 submitted materials
80 Fietkiewicz C, Loparo KA, Wilson CG (2011) Drive latencies in hypoglossal motoneurons indicate developmental change in the brainstem respiratory network. J Neural Eng 8:065011 [PubMed] submitted materials
81 Foust AJ, Yu Y, Popovic M, Zecevic D, McCormick DA (2011) Somatic membrane potential and Kv1 channels control spike repolarization in cortical axon collaterals and presynaptic boutons The Journal of Neuroscience 31(43):15490-15498 [PubMed] submitted materials
82 Fujita T, Fukai T, Kitano K (2011) Influences of membrane properties on phase response curve and synchronization stability in a model globus pallidus neuron. [epub ahead of print] J Comput Neurosci [PubMed] submitted materials
83 Gilson M, Masquelier T, Hugues E (2011) STDP Allows Fast Rate-Modulated Coding with Poisson-Like Spike Trains PLoS Comput Biol 7(10):e1002231 submitted materials
84 Halfmann K, Crisp K (2011) A Kinematic Study of Pulsation in the Dorsal Blood Vessel of the blackworm, Lumbriculus variegatus IMPULSE-An Undergraduate Journal for Neuroscience :1-10 submitted materials
85 Halnes G, Augustinaite S, Heggelund P, Einevoll GT, Migliore M (2011) A Multi-Compartment Model for Interneurons in the Dorsal Lateral Geniculate Nucleus PLoS Comp. Biol. 7(9):e1002160 [PubMed] submitted materials
86 Hay E, Hill S, Schurmann F, Markram H, Segev I (2011) Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS Comput Biol 7:e1002107 [PubMed] submitted materials
87 Hendrickson EB, Edgerton JR, Jaeger D (2011) The capabilities and limitations of conductance-based compartmental neuron models with reduced branched or unbranched morphologies and active dendrites. J. Comp. Neurosci. 30(2):301-321 [PubMed] submitted materials
88 Hendrickson EB, Edgerton JR, Jaeger D (2011) The use of automated parameter searches to improve ion channel kinetics for neural modeling. J Comput Neurosci [PubMed] submitted materials
89 Hines M, Kumar S, Schuermann F (2011) Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer. Frontiers in Computational Neuroscience 5:49 submitted materials
90 Jaffe DB, Wang B, Brenner R (2011) Shaping of action potentials by type I and type II large-conductance Ca(2+)-activated K(+) channels. Neuroscience [PubMed] submitted materials
91 Jedlicka P, Deller T, Gutkin BS, Backus KH (2011) Activity-dependent intracellular chloride accumulation and diffusion controls GABA(A) receptor-mediated synaptic transmission. Hippocampus 21:885-98 [PubMed] obtained materials
92 Kannon T, Inagaki K, Kamiji NL, Makimura K, Usui S (2011) PLATO: data-oriented approach to collaborative large-scale brain system modeling. Neural Netw 24:918-26 [PubMed] mentions
93 Katona G, Kaszas A, Turi GF, Hajos N, Tamas G, Vizi ES, Rozsa B (2011) Roller Coaster Scanning reveals spontaneous triggering of dendritic spikes in CA1 interneurons. Proc Natl Acad Sci U S A 108:2148-53 [PubMed] submitted materials
94 Klaus A, Planert H, Hjorth J, Berke JD, Silberberg G, Kotaleski JH (2011) Striatal fast-spiking interneurons: from firing patterns to postsynaptic impact Front. Syst. Neurosci. submitted materials
95 Kopp-Scheinpflug C, Tozer AJB, Robinson SW,Tempel BL, Hennig MH, Forsythe ID (2011) The Sound of Silence: ionic mechanisms encoding sound termination Neuron 71(5):911-925 submitted materials
96 Kubota Y,Karube F, Nomura M, Gulledge AT, Mochizuki A, Schertel A, Kawaguchi Y (2011) Conserved properties of dendritic trees in four cortical interneuron subtypes Scientific Reports 1(89):1-13 submitted materials
97 Li X, Morita K, Robinson HP, Small M (2011) Impact of gamma-oscillatory inhibition on the signal transmission of a cortical pyramidal neuron. Cogn Neurodyn 5:241-51 [PubMed] obtained materials
98 Linaro D, Storace M, Giugliano M (2011) Accurate and fast simulation of channel noise in conductance-based model neurons by diffusion approximation PLOS 7:e1001102 [PubMed] submitted materials
99 Luthman J, Hoebeek FE, Maex R, Davey N, Adams R, De Zeeuw CI, Steuber V (2011) STD-dependent and independent encoding of input irregularity as spike rate in a computational model of a cerebellar nucleus neuron Cerebellum 10(4):667-82 [PubMed] both
100 Lytton WW, Neymotin SA, Wester JC, Contreras D (2011) Neocortical simulation for epilepsy surgery guidance: Localization and intervention Computational Surgery and Dual Training submitted materials
101 Mensi S, Naud R, Pozzorini C, Avermann M, Petersen CC, Gerstner W (2011) Parameter Extraction and Classification of Three Cortical Neuron Types Reveals Two Distinct Adaptation Mechanisms. J Neurophysiol (epub before print) [PubMed] both
102 Migliore M, De Blasi I, Tegolo D, Migliore R (2011) A modeling study suggesting how a reduction in the context-dependent input on CA1 pyramidal neurons could generate schizophrenic behavior. Neural Netw [PubMed] submitted materials
103 Monaco JD, Knierim JJ, Zhang K (2011) Sensory feedback, error correction, and remapping in a multiple oscillator model of place cell activity Frontiers in Computational Neuroscience 5(0):39 submitted materials
104 Moroni M, Biro I, Giugliano M, Vijayan R, Biggin PC, Beato M, Sivilotti LG (2011) Chloride Ions in the Pore of Glycine and GABA Channels Shape the Time Course and Voltage Dependence of Agonist Currents J Neuroscience 31(40):14095-14106 submitted materials
105 Muller L, Brette R, Gutkin B (2011) Spike-Timing Dependent Plasticity and Feed-Forward Input Oscillations Produce Precise and Invariant Spike Phase-Locking. Front Comput Neurosci 5:45 [PubMed] submitted materials
106 Neymotin SA, Lazarewicz MT, Sherif M, Contreras D, Finkel LH, Lytton WW (2011) Ketamine disrupts theta modulation of gamma in a computer model of hippocampus Journal of Neuroscience 31(32):11733-11743 [PubMed] submitted materials
107 Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW (2011) Emergence of physiological oscillation frequencies in a computer model of neocortex. Front Comput Neurosci 5:19-75 [PubMed] submitted materials
108 Neymotin SA, Lytton WW, Olypher AO, Fenton AA (2011) Measuring the quality of neuronal identification in ensemble recordings Journal of Neuroscience 31(45):16398-16409 [PubMed] submitted materials
109 Nickerson DP, Terkildsen JR, Hamilton KL, Hunter PJ (2011) A tool for multi-scale modelling of the renal nephron Interface Focus mentions
110 O`Donnell C, Nolan MF, van Rossum MCW (2011) Dendritic spine dynamics regulate the long-term stability of synaptic plasticity. J Neurosci 31:16142-56 [PubMed] submitted materials
111 Poleg-Polsky A, Diamond JS (2011) Imperfect Space Clamp Permits Electrotonic Interactions between Inhibitory and Excitatory Synaptic Conductances, Distorting Voltage Clamp Recordings. PLoS ONE 6(4):e119463-. both
112 Powers RK, Elbasiouny SM, Rymer WZ, Heckman CJ (2011) Contribution of Intrinsic Properties and Synaptic Inputs to Motoneuron Discharge Patterns: A Simulation Study. J Neurophysiol [PubMed] submitted materials
113 Ratte S, Prescott SA (2011) ClC-2 channels regulate neuronal excitability, not intracellular chloride levels J Neurosci 31(44):15838-15843 submitted materials
114 Shah MM, Migliore M, Brown DA (2011) Differential effects of Kv7 (M-) channels on synaptic integration in distinct subcellular compartments of rat hippocampal pyramidal neurons. J Physiol 589:6029-38 [PubMed] submitted materials
115 Simões de Souza F, De Schutter E (2011) Robustness effect of gap junctions between Golgi cells on cerebellar cortex oscillations Neural Systems & Circuits 1:7:1-19 submitted materials
116 Stacey WC, Krieger A, Litt B (2011) Network recruitment to coherent oscillations in a hippocampal computer model. J Neurophysiol 105(4):1464-1481 [PubMed] submitted materials
116 Stacey WC, Krieger A, Litt B (2011) Network recruitment to coherent oscillations in a hippocampal computer model. J Neurophysiol 105(4):1464-1481 [PubMed] obtained materials
117 Stanley DA, Bardakjian BL, Spano ML, Ditto WL (2011) Stochastic amplification of calcium-activated potassium currents in Ca(2+) microdomains. J Comput Neurosci [PubMed] submitted materials
118 Taylor PN, Baier G (2011) A spatially extended model for macroscopic spike-wave discharges. J Comput Neurosci [PubMed] submitted materials
119 Testa-Silva G, Loebel A, Giugliano M, de Kock CP, Mansvelder HD, Meredith RM (2011) Hyperconnectivity and Slow Synapses during Early Development of Medial Prefrontal Cortex in a Mouse Model for Mental Retardation and Autism Cerebral Cortex 22(6):1333-42 [PubMed] submitted materials
120 Vladimirov N, Tu Y, Traub RD (2012) Shortest loops are pacemakers in random networks of electrically coupled axons Frontiers in Computational Neuroscience 6:17 [PubMed] submitted materials
121 Welday AC, Shlifer IG, Bloom ML, Zhang K, Blair HT (2011) Cosine Directional Tuning of Theta Cell Burst Frequencies: Evidence for Spatial Coding by Oscillatory Interference J. Neurosci. 31:16157-16176 [PubMed] submitted materials
122 Wenger C, Paredes L, Rattay F (2011) Current-distance relations for microelectrode stimulation of pyramidal cells. Artif Organs 35:263-6 [PubMed] obtained materials
123 Yamazaki T, Ikeno H, Okumura Y, Satoh S, Kamiyama Y, Hirata Y, Inagaki K, Ishihara A, et al. (2011) Simulation Platform: A cloud-based online simulation environment. Neural Netw 24:693-8 [PubMed] mentions
124 Zandt BJ, ten Haken B, van Dijk JG, van Putten MJAM (2011) Neural Dynamics during Anoxia and the "Wave of Death" PLoS ONE 6(7):e22127 submitted materials
125 van Elburg R (2011) Stochastic Continuous Time Neurite Branching Models with Tree and Segment Dependent Rates Journal of Theoretical Biology 276(1):159-173 submitted materials
126 Anwar H, Hong S, De Schutter E (2010) Controlling Ca(2+)-Activated K (+) Channels with Models of Ca (2+) Buffering in Purkinje Cells. Cerebellum [PubMed] submitted materials
127 Ascoli GA, Gasparini S, Medinilla V, Migliore M (2010) Local Control of Post-Inhibitory Rebound Spiking in CA1 Pyramidal Neuron Dendrites J.Neurosci. 30(18):6434-42 [PubMed] submitted materials
128 Baker JL, Perez-Rosello T, Migliore M, Barrionuevo G, Ascoli GA (2010) A computer model of unitary responses from associational-commissural and perforant path synapses in hippocampal CA3 pyramidal cells. J Comput Neurosci [PubMed] submitted materials
129 Botta P, de Souza FM, Sangrey T, De Schutter E, Valenzuela CF (2010) Alcohol excites cerebellar Golgi cells by inhibiting the Na(+)-K(+) ATPase. Neuropsychopharmacology 35:1984-96 [PubMed] submitted materials
130 Branco T, Clark BA, Hausser M (2010) Dendritic Discrimination of Temporal Input Sequences in Cortical Neurons. Science 329(5999):1671-1675 [PubMed] submitted materials
131 Brazhe AR, Maksimov GV, Mosekilde E, Sosnovtseva O (2010) Excitation block in a nerve fibre model owing to potassium-dependent changes in myelin resistance Journal of Interface Focus 1(1):86-100 submitted materials
132 Cannon RC, O`Donnell C, Nolan MF (2010) Stochastic ion channel gating in dendritic neurons: morphology dependence and probabilistic synaptic activation of dendritic spikes. PLoS Comput Biol [PubMed] obtained materials
133 Chen BS, Lo YC, Liu YC, Wu SN (2010) Effects of transient receptor potential-like current on the firing pattern of action potentials in the Hodgkin-Huxley neuron during exposure to sinusoidal external voltage Chinese Journal of Physiology 53(6):423-429 submitted materials
134 Dover K, Solinas S, D`Angelo E, Goldfarb M (2010) Long-term inactivation particle for voltage-gated sodium channels. J Physiol 588:3695-711 [PubMed] submitted materials
135 Edgerton JR, Hanson JE, Gunay C, Jaeger D (2010) Dendritic sodium channels regulate network integration in globus pallidus neurons: a modeling study. J Neurosci 30:15146-59 [PubMed] submitted materials
136 Gabbiani F, Cox SJ (2010) Mathematics for Neuroscientists :1-486 obtained materials
137 Gambazzi L, Gokce O, Seredenina T, Katsyuba E, Runne H, Markram H, Giugliano M, Luthi-Carter (2010) Diminished activity-dependent BDNF expression underlies cortical neuron microcircuit hypoconnectivity resulting from exposure to mutant huntingtin fragments. J Pharmacol Exp Ther [PubMed] submitted materials
138 Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray (2010) NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS Comput Biol 6:e1000815 [PubMed] obtained materials
139 Goldwyn JH, Imennov NS, Famulare M, Shea-Brown E (2011) On stochastic diff erential equation models for ion channel noise in Hodgkin-Huxley neurons Phys. Rev. E 83:041908 submitted materials
140 Hahn PJ, McIntyre CC (2010) Modeling shifts in the rate and pattern of subthalamopallidal network activity during deep brain stimulation. J Comput Neurosci 28:425-41 [PubMed] submitted materials
141 Jedlicka P, Hoon M, Papadopoulos T, Vlachos A, Winkels R, Poulopoulos A, Betz H, Deller T, Br (2010) Increased Dentate Gyrus Excitability in Neuroligin-2-Deficient Mice in Vivo. Cereb Cortex [PubMed] obtained materials
142 Kim M, Huang T, Abel T, Blackwell KT (2010) Temporal Sensitivity of Protein Kinase A Activation in Late-Phase Long Term Potentiation PLoS Comput Biol 6(2):e1000691 submitted materials
143 Kuznetsova AY, Huertas MA, Kuznetsov AS, Paladini CA, Canavier CC (2010) Regulation of firing frequency in a computational model of a midbrain dopaminergic neuron. J Comput Neurosci 28:389-403 [PubMed] submitted materials
144 Le Franc Y, Le Masson G (2010) Multiple firing patterns in deep Dorsal Horn Neurons of the spinal cord: computational analysis of mechanisms and functional implications. J Neurophysiol [PubMed] both
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292 Zaika O, Tolstykh GP, Jaffe DB, Shapiro MS (2007) Inositol triphosphate-mediated Ca2+ signals direct purinergic P2Y receptor regulation of neuronal ion channels. J Neurosci 27:8914-26 [PubMed] obtained materials
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304 Lytton WW (2006) Neural Query System: Data-mining from within the NEURON simulator. Neuroinformatics 4:163-76 [PubMed] obtained materials
305 Migliore M, Cannia C, Lytton WW, Markram H, Hines ML (2006) Parallel Network Simulations with NEURON. J Comp Neurosci 21:110-119 [PubMed] both
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310 Yokawa K,Nishimura T (2006) Book Chapter, An electrical stimulation on retinal ganglion cell for retinal prosthesis based on CMOS image sensor: A study of electrophysiological simulation IFMBE Proceedings, World Congress on Medical Physics and Biomedical Engineering 2006 Part 23 mentions
311 Zaika O, Lara L, Gamper N, Hilgemann DW, Jaffe DB, Shapiro MS (2006) Angiotensin II regulates neuronal excitability via phosphatidylinositol 4,5-bisphosphate-dependent modulation of Kv7 (M-type) K+ channels. J. Physiol. 575:49-67 [PubMed] obtained materials
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315 Bug W (2005) The impact of the NIH public access policy on literature informatics: What role can the neuroinformaticists play? Neuroinformatics 3:81-91 [PubMed] mentions
316 Cataldo E, Brunelli M, Byrne JH, Av-Ron E, Cai Y, Baxter DA (2005) Computational Model of Touch Sensory Cells (T Cells) of the Leech: Role of the Afterhyperpolarization (AHP) in Activity-Dependent Conduction Failure Journal of Computational Neuroscience 18:5-24 [PubMed] submitted materials
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318 Hossain WA, Antic SD, Yang Y, Rasband MN, Morest DK (2005) Where is the spike generator of the cochlear nerve? Voltage-gated sodium channels in the mouse cochlea. J Neurosci 25:6857-68 [PubMed] obtained materials
319 Lazarewicz M, Das S, Finkel LH (2005) Recognition of temporal event sequences by a network of cortical neurons Neurocomputing 65-66:143-151 obtained materials
320 Lytton WW, Hines ML (2005) Independent variable time-step integration of individual neurons for network simulations. Neural Comput 17:903-21 [PubMed] both
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322 Migliore M, Hines ML, Shepherd GM (2005) The role of distal dendritic gap junctions in synchronization of mitral cell axonal output. J Comp Neurosci 18:151-161 [PubMed] submitted materials
323 Migliore M, Shepherd GM (2005) Opinion: an integrated approach to classifying neuronal phenotypes. Nat Rev Neurosci 6:810-8 [PubMed] obtained materials
324 Moss BL, Fuller AD, Sahley CL, Burrell BD (2005) Serotonin modulates axo-axonal coupling between neurons critical for learning in the leech J Neurophysiol 94(4):2575-89 [PubMed] submitted materials
325 Otake M, Takagi T (2005) Reassembly and interfacing neural models registered on biological model databases. Genome Inform 16:76-85 [PubMed] obtained materials
326 Saghatelyan A,Roux P,Migliore M,Rochefort C,Desmaisons D,Charneau P,Shepherd GM, Lledo PM (2005) Activity-dependent adjustments of the inhibitory network in the olfactory bulb following early postnatal deprivation. Neuron 46:103-116 [PubMed] submitted materials
327 Santhakumar V, Aradi I, Soltesz I (2005) Role of mossy fiber sprouting and mossy cell loss in hyperexcitability: a network model of the dentate gyrus incorporating cell types and axonal topography. J Neurophysiol 93:437-53 [PubMed] obtained materials
328 Sengupta B (2005) Book Chapter, Modeling of Short-Term Synaptic Plasticity Using Dynamic Synapses Lecture Notes in Computer Science, Advances in Natural Computation obtained materials
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330 Sikora MA, Gottesman J, Miller RF (2005) A computational model of the ribbon synapse. J Neurosci Methods 145:47-61 [PubMed] submitted materials
331 Trevelyan AJ, Watkinson O (2005) Does inhibition balance excitation in neocortex? Prog Biophys Mol Biol 87:109-43 [PubMed] obtained materials
332 Wu SN, Chang HD (2005) Diethyl pyrocarbonate, a histidine-modifying agent, directly stimulates activity of ATP-sensitive potassium channels in pituitary GH(3) cells. Biochem Pharmacol [PubMed] submitted materials
333 Aradi I, Maccaferri G (2004) Cell type-specific synaptic dynamics of synchronized bursting in the juvenile CA3 rat hippocampus. J Neurosci 24:9681-92 [PubMed] obtained materials
334 Davison A (2004) Biologically-detailed network modelling (Chapter 10) Computation Neuroscience: A Comprehensive Approach, Feng J, ed. pp.287 mentions
335 Davison AP, Morse TM, Migliore M, Shepherd GM, Hines ML (2004) Semi-automated population of an online database of neuronal models (ModelDB) with citation information, using PubMed for validation. Neuroinformatics 2:327-32 mentions
336 Djurisic M, Antic S, Chen WR, Zecevic D (2004) Voltage imaging from dendrites of mitral cells: EPSP attenuation and spike trigger zones. J Neurosci 24:6703-14 [PubMed] submitted materials
337 Gasparini S, Migliore M, Magee JC (2004) On the initiation and propagation of dendritic spikes in CA1 pyramidal neurons. J Neurosci 24:11046-11056 [PubMed] both
338 Heilman AD, Quattrochi J (2004) Computational models of epileptiform activity in single neurons. Biosystems 78:1-21 [PubMed] obtained materials
339 Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM (2004) ModelDB: A Database to Support Computational Neuroscience. J Comput Neurosci 17:7-11 [PubMed] mentions
340 Maurice N, Mercer J, Chan CS, Hernandez-Lopez S, Held J, Tkatch T, Surmeier DJ (2004) D2 dopamine receptor-mediated modulation of voltage-dependent Na+ channels reduces autonomous activity in striatal cholinergic interneurons. J Neurosci 24:10289-301 [PubMed] both
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342 Sterratt DC, van Ooyen A (2004) Does a dendritic democracy need a ruler? Neurocomputing 58:437-442 obtained materials
343 Crasto CJ, Marenco LN, Migliore M, Mao B, Nadkarni PM, Miller P, Shepherd GM (2003) Text mining neuroscience journal articles to populate neuroscience databases. Neuroinformatics 1:215-37 [PubMed] mentions
344 D'Alessandro G (2003) Axiope: data sharing using distributed catalogs. Neuroinformatics 1:285-8 [PubMed] mentions
345 Davison AP, Feng J, Brown D (2003) Dendrodendritic inhibition and simulated odor responses in a detailed olfactory bulb network model. J Neurophysiol 90:1921-1935 [PubMed] submitted materials
346 Graham LJ (2003) ModelDB, neuroinformatics, and computational neuroscience. Neuroinformatics 1:141-4 [PubMed] mentions
347 Marenco L, Tosches N, Crasto C, Shepherd G, Miller PL, Nadkarni PM (2003) Achieving evolvable Web-database bioscience applications using the EAV-CR framework: recent advances. J Am Med Inform Assoc 10:444-53 [PubMed] mentions
348 Migliore M (2003) On the Integration of Subthreshold Inputs from Perforant Path and Schaffer Collaterals in Hippocampal CA1 Pyramidal Neurons. J Comput Neurosci 14:185-192 [PubMed] submitted materials
349 Migliore M, Morse TM, Davison AP, Marenco L, Shepherd GM, Hines ML (2003) ModelDB: making models publicly accessible to support computational neuroscience. Neuroinformatics 1:135-9 [PubMed] mentions
350 Migliore M, Shepherd GM (2002) Emerging rules for the distributions of active dendritic conductances. Nature Review Neuroscience 3:362-70 [PubMed] submitted materials
351 Watanabe S, Hoffman DA, Migliore M, Johnston D (2002) Dendritic K+ channels contribute to spike-timing dependent long-term potentiation in hippocampal pyramidal neurons. Proc Natl Acad Sci U S A 99:8366-8371 [PubMed] both
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353 Migliore M, Messineo L, Cardaci M, Ayala GF (2001) Quantitative modeling of perception and production of time intervals. J Neurophysiol 86:2754-60 [PubMed] submitted materials
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355 Shepherd GM, Mirsky JS, Healy MD, Singer MS, Skoufos E, Hines MS, Nadkarni PM, Miller PL (1998) The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data. Trends Neurosci 21:460-8 [PubMed] mentions
356 Peterson BE, Healy MD, Nadkarni PM, Miller PL, Shepherd GM (1996) ModelDB: an environment for running and storing computational models and their results applied to neuroscience. J Am Med Inform Assoc 3:389-98 [PubMed] mentions


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