Papers that obtained or contributed code in ModelDB

These papers state (in text) they used or contributed code to ModelDB or both
or they mention ModelDB in a neuroinformatics infrastructure context.

1Fietkiewicz C, Shafer GO, Platt EA, Wilson CG (2016) Variability in respiratory rhythm generation: In vitro and in silico models Communications in Nonlinear Science and Numerical Simulation 32:158-168submitted materials
2Balbi P, Martinoia S, Massobrio P (2015) Axon-somatic back-propagation in detailed models of spinal alpha motoneurons Front. Comput. Neurosci. 9:15submitted materials
3Briant LJ, Paton JF, Pickering AE, Champneys AR (2015) Modelling the vascular response to sympathetic postganglionic nerve activity. J Theor Biol 371:102-16[PubMed]obtained materials
4Bush D, Barry C, Manson D, Burgess N (2015) Using Grid Cells for Navigation Neuron 87:507-520submitted materials
5Carey RM, Sherwood WE, Shipley MT, Borisyuk A, Wachowiak M (2015) Role of intraglomerular circuits in shaping temporally structured responses to naturalistic inhalation-driven sensory input to the olfactory bulb. J Neurophysiol :jn.00394.2014[PubMed]submitted materials
6Coskren PJ, Luebke JI, Kabaso D, Wearne SL, Yadav A, Rumbell T, Hof PR, Weaver CM (2015) Functional consequences of age-related morphologic changes to pyramidal neurons of the rhesus monkey prefrontal cortex. J Comput Neurosci 38:263-83[PubMed]both
7Costa RP, Froemke RC, Sjöström PJ, van Rossum MCW (2015) Unified pre- and postsynaptic long-term plasticity enables reliable and flexible learning eLifesubmitted materials
8Damodaran S, Cressman JR, Jedrzejewski-Szmek Z, Blackwell KT (2015) Desynchronization of Fast-Spiking Interneurons Reduces beta-Band Oscillations and Imbalance in Firing in the Dopamine-Depleted Striatum. J Neurosci 35:1149-59[PubMed]submitted materials
9Ferguson KA, Huh CY, Amilhon B, Manseau F, Williams S, Skinner FK (2015) Network models provide insights into how oriens-lacunosum-moleculare and bistratified cell interactions influence the power of local hippocampal CA1 theta oscillations. Front Syst Neurosci 9:110[PubMed]submitted materials
10Fink CG, Gliske S, Catoni N, Stacey WC (2015) Disorders of the Nervous System Network Mechanisms Generating Abnormal and Normal Hippocampal High-Frequency Oscillations: A Computational Analysis eNeuro, epubsubmitted materials
11Forrest MD (2015) Simulation of alcohol action upon a detailed Purkinje neuron model and a simpler surrogate model that runs >400 times faster BMC Neuroscience 16:27[PubMed]submitted materials
12Garci­a-Grajales JA, Rucabado G, Garci­a-Dopico A, Pena JM, Jerusalem A (2015) Neurite, a Finite Difference Large Scale Parallel Program for the Simulation of Electrical Signal Propagation in Neurites under Mechanical Loading. PLoS One 10(2):e0116532[PubMed]submitted materials
13Gilra A, Bhalla US (2015) Bulbar microcircuit model predicts connectivity and roles of interneurons in odor coding. PLoS One 10:e0098045[PubMed]submitted materials
14Gunay C, Sieling FH, Dharmar L, Lin WH, Wolfram V, Marley R, Baines RA, Prinz AA (2015) Distal spike initiation zone location estimation by morphological simulation of ionic current filtering demonstrated in a novel model of an identified Drosophila motoneuron. PLoS Comput Biol 11:e1004189[PubMed]submitted materials
15Hay E, Segev I (2015) Dendritic excitability and gain control in recurrent cortical microcircuits Cerebral Cortex 25(10):3561-3571[PubMed]submitted materials
16Keller D, Babai N, Kochubey O, Han Y, Markram H, Schürmann F, Schneggenburger R (2015) An Exclusion Zone for Ca2+ Channels around Docked Vesicles Explains Release Control by Multiple Channels at a CNS Synapse. PLoS Comput Biol 11:e1004253[PubMed]submitted materials
17Kim Y, Hsu CL, Cembrowski MS, Mensh BD, Spruston N (2015) Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons. Elife[PubMed]submitted materials
18McDougal RA, Morse TM, Hines ML, Shepherd GM (2015) ModelView for ModelDB: online presentation of model structure Neuroinformatics, epub before printboth
18McDougal RA, Morse TM, Hines ML, Shepherd GM (2015) ModelView for ModelDB: online presentation of model structure Neuroinformatics, epub before printmentions
19Miceli F, Soldovieri MV, Ambrosino P, De Maria M, Migliore M, Migliore R, Taglialatela M (2015) Early-onset epileptic encephalopathy caused by gain-of-function mutations in the voltage sensor of Kv7.2 and Kv7.3 potassium channel subunits. J Neurosci 35:3782-93[PubMed]both
20Migliore M, Cavarretta F, Marasco A, Tulumello E, Hines ML, Shepherd GM (2015) Synaptic clusters function as odor operators in the olfactory bulb PNAS 112:8499-8504[PubMed]submitted materials
21Migliore M, De Simone G, Migliore R (2015) Effect of the Initial Synaptic State on the Probability to Induce Long-Term Potentiation and Depression Biophysical Journal 108:1038-1046[PubMed]submitted materials
22Nakano T, Otsuka M, Yoshimoto J, Doya K (2015) A spiking neural network model of model-free reinforcement learning with high-dimensional sensory input and perceptual ambiguity. PLoS One 10:e0115620[PubMed]submitted materials
23Neymotin SA, McDougal RA, Sherif MA, Fall CP, Hines ML, Lytton WW (2015) Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model Neural Computation 27(4):898-924[PubMed]submitted materials
24Powers RK, Heckman CJ (2015) Contribution of intrinsic motoneuron properties to discharge hysteresis and its estimation based on paired motor unit recordings. A simulation study. J Neurophysiol 114:184-198[PubMed]submitted materials
25Sadeh S, Clopath C, Rotter S (2015) Emergence of Functional Specificity in Balanced Networks with Synaptic Plasticity. PLoS Comput Biol 11:e1004307[PubMed]submitted materials
26Shai AS, Anastassiou CA, Larkum ME, Koch C (2015) Physiology of layer 5 pyramidal neurons in mouse primary visual cortex: coincidence detection through bursting. PLoS Comput Biol 11:e1004090[PubMed]both
27Simmonds B, Chacron MJ (2015) Activation of parallel fiber feedback by spatially diffuse stimuli simultaneously reduces signal and noise correlations via independent mechanisms in a cerebellum-like structure PLoS Comp Biol 11(1):e1004034[PubMed]submitted materials
28Solari F, Chessa M, Medathati NVK, Kornprobst P (2015) What can we expect from a V1-MT feedforward architecture for optical flow estimation? Signal Processing: Image Communicationsubmitted materials
29Wimmer K, Compte A, Roxin A, Peixoto D, Renart A, de la Rocha J (2015) Sensory integration dynamics in a hierarchical network explains choice probabilities in cortical area MT. Nat Commun 6:6177[PubMed]submitted materials
30Zhao X, Robinson PA (2015) Generalized seizures in a neural field model with bursting dynamics. J Comput Neurosci[PubMed]submitted materials
31Allken V, Chepkoech J-L, Einevoll GT, Halnes G (2014) The subcellular distribution of T-type Ca++ channels in interneurons of the lateral geniculate nucleus PLoS ONE 9(9):e107780[PubMed]submitted materials
32Almog M, Korngreen A (2014) A Quantitative Description of Dendritic Conductances and Its Application to Dendritic Excitation in Layer 5 Pyramidal Neurons J Neurosci 34(1):182-196both
33Antunes G, Sebastiao AM, Simoes de Souza FM (2014) Mechanisms of regulation of olfactory transduction and adaptation in the olfactory cilium. PLoS One 9:e105531[PubMed]submitted materials
34Anwar H, Roome CJ, Nedelescu H, Chen W, Kuhn B, De Schutter E (2014) Dendritic diameters affect the spatial variability of intracellular calcium dynamics in computer models Frontiers in Cellular Neuroscience 8(168):1-14[PubMed]submitted materials
35Arbib MA, Plangprasopchok A, Bonaiuto J, Schuler RE (2014) A neuroinformatics of brain modeling and its implementation in the Brain Operation Database BODB. Neuroinformatics 12:5-26[PubMed]mentions
36Avella Gonzalez OJ, Van Aerde KI, Mansvelder HD, Van Pelt J, Van Ooyen A (2014) Inter-network interactions: impact of connections between oscillatory neuronal networks on oscillation frequency and pattern PloS ONE 9(7):e100899[PubMed]submitted materials
37Bacque-Cazenave J, Chung B, Cofer DW, Cattaert D, Edwards DH (2014) The effect of sensory feedback on crayfish posture and locomotion. II. Neuromechanical simulation of closing the loop. J Neurophysiol :jn.00870.2014[PubMed]submitted materials
38Behabadi BF, Mel BW (2014) Mechanisms underlying subunit independence in pyramidal neuron dendrites. Proc Natl Acad Sci U S A 111:498-503[PubMed]obtained materials
39Bianchi D, De Michele P, Marchetti C, Tirozzi B, Cuomo S, Marie H, Migliore M (2014) Effects of increasing CREB-dependent transcription on the storage and recall processes in a hippocampal CA1 microcircuit. Hippocampus 24:165-77[PubMed]both
40Briant LJ, Stalbovskiy AO, Nolan MF, Champneys AR, Pickering AE (2014) Increased intrinsic excitability of muscle vasoconstrictor preganglionic neurons may contribute to the elevated sympathetic activity in hypertensive rats. J Neurophysiol 112:2756-2778[PubMed]submitted materials
41Briley PM, Summerfield AQ (2014) Age-related deterioration of the representation of space in human auditory cortex Neurobiology of Aging 35(3):633-644[PubMed]submitted materials
42Caplan JS, Williams AH, Marder E (2014) Many parameter sets in a multicompartment model oscillator are robust to temperature perturbations J Neurosci. 34(14):496-75[PubMed]submitted materials
43Casaleggio A, Hines ML, Migliore M (2014) Computational model of erratic arrhythmias in a cardiac cell network: the role of gap junctions. PLoS One 9:e100288[PubMed]both
44Casellato C, Antonietti A, Garrido JA, Carrillo RR, Luque NR, Ros E, Pedrocchi A, D`Angelo E (2014) Adaptive Robotic Control Driven by a Versatile Spiking Cerebellar Network. PLoS One 9:e112265[PubMed]submitted materials
45Cavallari S, Panzeri S, Mazzoni A (2014) Comparison of the dynamics of neural interactions between current-based and conductance-based integrate-and-fire recurrent networks Frontiers in Neural Circuits 8:12submitted materials
46Cavarretta F, Carnevale NT, Tegolo D, Migliore M (2014) Effects of low frequency electric fields on synaptic integration in hippocampal CA1 pyramidal neurons: implications for power line emissions Front. Cell. Neurosci. 8:310both
47Chadderdon GL, Mohan A, Suter BA, Neymotin SA, Kerr CC, Francis JT, Shepherd GM, Lytton WW (2014) Motor cortex microcircuit simulation based on brain activity mapping. Neural Comput 26:1239-62[PubMed]submitted materials
48Chen M, Guo D, Wang T, Jing W, Xia Y, Xu P, Luo C, Valdes-Sosa PA, Yao D (2014) Bidirectional control of absence seizures by the Basal Ganglia: a computational evidence PLoS Computational Biology 10(3):e1003495[PubMed]submitted materials
49Chen W, De Schutter E (2014) Python-based geometry preparation and simulation visualization toolkits for STEPS Front. Neuroinform. 8:37submitted materials
50Chung B, Bacque-Cazenave J, Cofer DW, Cattaert D, Edwards DH (2014) The effect of sensory feedback on crayfish posture and locomotion: I. Experimental analysis of closing the loop. J Neurophysiol :jn.00248.2014[PubMed]submitted materials
51Clopath C, Badura A, De Zeeuw CI, Brunel N (2014) A cerebellar learning model of vestibulo-ocular reflex adaptation in wild-type and mutant mice. J Neurosci 34:7203-15[PubMed]submitted materials
52Cohen MX (2014) Fluctuations in oscillation frequency control spike timing and coordinate neural networks Journal of Neuroscience 34(27):8988-8998both
53Damodaran S, Evans RC, Blackwell KT (2014) Synchronized firing of fast-spiking interneurons is critical to maintain balanced firing between direct and indirect pathway neurons of the striatum. J Neurophysiol 111:836-48[PubMed]submitted materials
54De Schutter E (2014) The dangers of plug-and-play simulation using shared models. Neuroinformatics 12:227-8[PubMed]mentions
55Devore S, de Almeida L, Linster C (2014) Distinct roles of bulbar muscarinic and nicotinic receptors in olfactory discrimination learning. J Neurosci 34:11244-60[PubMed]submitted materials
56Eguchi A, Neymotin SA and Stringer SM (2014) Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity 8:16. doi: Front. Neural Circuits 8:16submitted materials
57Esposito U, Giugliano M, van Rossum M, Vasilaki E (2014) Measuring symmetry, asymmetry and randomness in neural network connectivity. PLoS One 9:e100805[PubMed]submitted materials
58Eyal G, Mansvelder, HD, de Kock CPJ, Segev I (2014) Dendrites impact the encoding capabilities of the axon J Neurosci 34(24):8063-8071obtained materials
59Goldwyn JH, McLaughlin M, Verschooten E, Joris PX, Rinzel J (2014) A model of the medial superior olive explains spatiotemporal features of local field potentials J Neurosci. 34(35):11705-22[PubMed]submitted materials
60Graham BP, Saudargiene A, Cobb S (2014) Spine head calcium as a measure of summed postsynaptic activity for driving synaptic plasticity Neural Comput 26:2194-2222[PubMed]both
61Grein S, Stepniewski M, Reiter S, Knodel MM, Queisser G (2014) 1D-3D hybrid modeling-from multi-compartment models to full resolution models in space and time. Front Neuroinform 8:68[PubMed]obtained materials
62Hjorth JJ, van Pelt J, Mansvelder HD, van Ooyen A (2014) Competitive Dynamics during Resource-Driven Neurite Outgrowth. PLoS One 9:e86741[PubMed]submitted materials
63Hummos A, Franklin CC, Nair SS (2014) Intrinsic mechanisms stabilize encoding and retrieval circuits differentially in a hippocampal network model. Hippocampus 24:1430-1448[PubMed]submitted materials
64Konstantoudaki X, Papoutsi A, Chalkiadaki K, Poirazi P, Sidiropoulou K (2014) Modulatory effects of inhibition on persistent activity in a cortical microcircuit model. Front Neural Circuits 8:7[PubMed]submitted materials
65Kozlov AK, Kardamakis AA, Kotaleski JH, Grillner S (2014) Gating of steering signals through phasic modulation of reticulospinal neurons during locomotion PNAS 111(9):3591-3596[PubMed]submitted materials
66Lee SH, Marchionni I, Bezaire M, Varga C, Danielson N, Lovett-Barron M, Losonczy A, Soltesz I (2014) Parvalbumin-Positive Basket Cells Differentiate among Hippocampal Pyramidal Cells Neuron 82(5):1129-44[PubMed]submitted materials
67Makadia H, Anderson W, Fey D, Sauter T, Schwaber JS, Vadigepalli R (2015) Multiscale model of dynamic neuromodulation integrating neuropeptide induced signaling pathway activity with membrane electrophysiology Biophys J. 108(1):211-223[PubMed]submitted materials
68Migliore M, Cavarretta F, Hines ML, Shepherd GM (2014) Distributed organization of a brain microcircuit analysed by three-dimensional modeling: the olfactory bulb Front. Comput. Neurosci. 8:50both
69Morita K (2014) Differential cortical activation of the striatal direct and indirect-pathway cells: reconciling the anatomical and optogenetic results by a computational method. J Neurophysiol[PubMed]obtained materials
70Morita K, Kato A (2014) Striatal dopamine ramping may indicate flexible reinforcement learning with forgetting in the cortico-basal ganglia circuits Front. Neural Circuits 8:36submitted materials
71Nieus TR, Mapelli L, D Regulation of output spike patterns by phasic inhibition in cerebellar granule cells. Front Cell Neurosci 8:246[PubMed]obtained materials
72Papoutsi A, Sidiropoulou K, Poirazi P (2014) Dendritic nonlinearities reduce network size requirements and mediate ON and OFF states of persistent activity in a PFC microcircuit model PLoS Computational Biology 10(7):e1003764[PubMed]submitted materials
73Pezo D, Soudry D, Orio P (2014) Diffusion approximation-based simulation of stochastic ion channels: which method to use? Front Comp Neurosci 8:139[PubMed]both
74Reetz O, Stadler K, Strauss U (2014) Protein kinase C activation mediates interferon-β-induced neuronal excitability changes in neocortical pyramidal neurons Journal of Neuroinflammation 11(1):185[PubMed]submitted materials
75Rossert C, Solinas S, D`Angelo, Dean P, Porrill J (2014) Model cerebellar granule cells can faithfully transmit modulated firing rate signals Front. Cell. Neurosci. 8:304submitted materials
76Rowan MS, Neymotin SA, Lytton WW (2014) Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease. Front Comput Neurosci 8:39[PubMed]submitted materials
77Schneider CJ, Cuntz H, Soltesz I (2014) Linking Macroscopic with Microscopic Neuroanatomy Using Synthetic Neuronal Populations. PLoS Comput Biol 10:e1003921[PubMed]submitted materials
78Simoes_De_Souza FM, Antunes G, Roque AC (2014) Electrical responses of three classes of Granule Neurons of the Olfactory Bulb to synaptic Inputs in Different Dendritic Locations Front. Comput. Neurosci. 8:128submitted materials
79Skorheim SW, Razak K, Bazhenov M (2014) Network models of frequency modulated sweep detection PLoS ONE 9(12):e115196[PubMed]submitted materials
80Soudry D, Meir R (2014) The neuronal response at extended timescales: a linearized spiking input-output relation. Front Comput Neurosci 8:29[PubMed]submitted materials
81Sousa M, Szucs P, Lima D, Aguiar P (2014) The pronociceptive dorsal reticular nucleus contains mostly tonic neurons and shows a high prevalence of spontaneous activity in block preparation Journal of Neurophysiology 111(7):1507-1518[PubMed]submitted materials
82Taylor PN, Wang Y, Goodfellow M, Dauwels J, Moeller F, Stephani U, Baier G (2014) A computational study of stimulus driven epileptic seizure abatement PLoS One 9(12):e114316submitted materials
83Tchumatchenko T, Clopath C (2014) Oscillations emerging from noise-driven steady state in networks with electrical synapses and subthreshold resonance. Nat Commun 5:5512[PubMed]submitted materials
84Tejada J, Garcia-Cairasco N, Roque AC (2014) Combined role of seizure-induced dendritic morphology alterations and spine loss in newborn granule cells with mossy fiber sprouting on the hyperexcitability of a computer model of the dentate gyrus. PLoS Comput Biol 10:e1003601[PubMed]obtained materials
85Tomm C, Avermann M, Petersen C, Gerstner W, Vogels TP (2014) Connection-type-specific biases make uniform random network models consistent with cortical recordings J Neurophysiol, in presssubmitted materials
86Trousdale J, Carroll SR, Gabbiani F, Kresimir Josic K (2014) Near-Optimal Decoding of Transient Stimuli from Coupled Neuronal Subpopulations J Neurosci 34(36):12206-12222submitted materials
87Vasilaki E, Giugliano M (2014) Emergence of connectivity motifs in networks of model neurons with short- and long-term plastic synapses. PLoS One 9:e84626[PubMed]submitted materials
88Vertechi P, Brendel W, Machens CK (2014) Unsupervised learning of an efficient short-term memory network Advances in Neural Information Processing Systems 27:1-9submitted materials
89Wang Y, Goodfellow M, Taylor PN, Baier G (2014) Dynamic mechanisms of neocortical focal seizure onset PLoS Computational Biology 10(8):e1003787[PubMed]submitted materials
90Zandt BJ, Visser S, van Putten MJAM, ten Haken B (2014) A neural mass model based on single cell dynamics to model pathophysiology Journal of Computational Neuroscience 37(3):549-68[PubMed]submitted materials
91Zhou L, Baxter DA, Byrne JH (2014) Contribution of PKC to the Maintenance of 5-HT-Induced Short-Term Facilitation at Sensorimotor Synapses of Aplysia. J Neurophysiol[PubMed]submitted materials
92Andreev VP (2013) Cytoplasmic electric fields and electroosmosis: possible solution for the paradoxes of the intracellular transport of biomolecules PLoS One 8(4):e61884submitted materials
93Anwar H, Hepburn I, Nedelescu H, Chen W, De Schutter E (2013) Stochastic calcium mechanisms cause dendritic calcium spike variability J Neurosci 33(40):15848-15867both
94Balbi P, Martinoia S, Colombo R, Massobrio P (2013) Modelling recurrent discharge in the spinal α-motoneuron: Reappraisal of the F wave Clin Neurophysiol 125(2):427-9[PubMed]submitted materials
95Behuret S, Deleuze C, Gomez L, Fregnac Y and Bal T (2013) Cortically-controlled population stochastic facilitation as a plausible substrate for guiding sensory transfer across the thalamic gateway PLoS Computational Biology 9(12):e1003401submitted materials
96Berzhanskaya J, Chernyy N, Gluckman BJ, Schiff SJ, Ascoli GA (2013) Modulation of hippocampal rhythms by subthreshold electric fields and network topology. J Comput Neurosci 34(3):369-389[PubMed]both
97Brunner J, Ster J, Van-Weert S, Andrasi T, Neubrandt M, Corti C, Corsi M, Ferraguti F, Gerber (2013) Selective Silencing of Individual Dendritic Branches by an mGlu2-Activated Potassium Conductance in Dentate Gyrus Granule Cells. J Neurosci 33:7285-98[PubMed]obtained materials
98Cestele S, Labate A, Rusconi R, Tarantino P, Mumoli L, Franceschetti S, Annesi G, Mantegazza (2013) Divergent effects of the T1174S SCN1A mutation associated with seizures and hemiplegic migraine. Epilepsia 54:927-35[PubMed]obtained materials
99Cestele S, Schiavon E, Rusconi R, Franceschetti S, Mantegazza M (2013) Nonfunctional NaV1.1 familial hemiplegic migraine mutant transformed into gain of function by partial rescue of folding defects. Proc Natl Acad Sci U S A 110:17546-51[PubMed]obtained materials
100Chiu CQ, Lur G, Morse TM, Carnevale NT, Ellis-Davies G, Higley MJ (2013) Compartmentalization of GABAergic inhibition by dendritic spines Science 340:759-762submitted materials
101Conde-Sousa E, Aguiar P (2013) A working memory model for serial order that stores information in the intrinsic excitability properties of neurons J Comp Neurosci[PubMed]submitted materials
102Costa RP, Sjostrom PJ, van Rossum MC (2013) Probabilistic Inference of Short-Term Synaptic Plasticity in Neocortical Microcircuits Front. Comput. Neurosci.[PubMed]submitted materials
103Ellis M, Chambers JD, Gwynne RM, Bornstein JC (2013) Serotonin (5-HT) and cholecystokinin (CCK) mediate nutrient induced segmentation in guinea pig small intestine. Am J Physiol Gastrointest Liver Physiol[PubMed]obtained materials
104Evans RC, Maniar YM, Blackwell KT (2013) Dynamic modulation of spike timing dependent calcium influx during cortico-striatal upstates. J Neurophysiol 110(7):1631-1645[PubMed]submitted materials
105Ferrante M, Migliore M, Ascoli GA (2013) Functional Impact of Dendritic Branch-Point Morphology J. Neurosci. 33:2156-2165submitted materials
106Garrido JA, Luque NR, D`Angelo E, Ros E (2013) Distributed cerebellar plasticity implements adaptable gain control in a manipulation task: a closed-loop robotic simulation Front. Neural Circuits 7:159:1-20submitted materials
107Garrido JA, Ros E, D`Angelo E (2013) Spike timing regulation on the millisecond scale by distributed synaptic plasticity at the cerebellum input stage: a simulation study Front. Comput. Neurosci. 7:64[PubMed]submitted materials
108Halnes G, Ostby I, Pettersen KH, Omholt SW, Einevoll GT (2013) Electrodiffusive model for astrocytic and neuronal ion concentration dynamics. PLoS Comput Biol 9:e1003386[PubMed]submitted materials
109Hay E, Schurmann F, Markram H, Segev I (2013) Preserving Axo-somatic Spiking Features Despite Diverse Dendritic Morphology. J Neurophysiol 109(12):2972-81[PubMed]submitted materials
110Hernandez OE, Zurek EE (2013) Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON's programming language hoc. BMC Med Educ 13:70[PubMed]mentions
111Hituri K, Linne ML (2013) Comparison of Models for IP3 Receptor Kinetics Using Stochastic Simulations. PLoS One 8:e59618[PubMed]submitted materials
112Kerr CC, Van Albada SJ, Neymotin SA, Chadderdon GL, Robinson PA, Lytton WW (2013) Cortical information flow in Parkinson's disease: a composite network-field model. Front Comput Neurosci 7:39:1-14[PubMed]submitted materials
113Kim D, Pare D, Nair SS (2013) Mechanisms contributing to the induction and storage of Pavlovian fear memories in the lateral amygdala. Learn Mem 20:421-30[PubMed]submitted materials
114Kim JK, Forger DB, Marconi M, Wood D, Doran A, Wager T, Chang C, Walton KM (2013) Modeling and validating chronic pharmacological manipulation of circadian rhythms CPT: Pharmacometrics & Systems Pharmacology 2(7):1-11submitted materials
115Lamb DG, Calabrese RL (2013) Correlated conductance parameters in leech heart motor neurons contribute to motor pattern formation. PLoS One 8:e79267[PubMed]submitted materials
116Li X, Morita K, Robinson HP, Small M (2013) Control of layer 5 pyramidal cell spiking by oscillatory inhibition in the distal apical dendrites: a computational modelling study. J Neurophysiol 109(11):2739-2756[PubMed]obtained materials
117Luebke JI, Medalla M, Amatrudo JM, Weaver CM, Crimins JL, Hunt B, Hof PR, Peters A (2013) Age-Related Changes to Layer 3 Pyramidal Cells in the Rhesus Monkey Visual Cortex. Cereb Cortex[PubMed]obtained materials
118Mai Z, Liu H (2013) Random parameter sampling of a generic three-tier MAPK cascade model reveals major factors affecting its versatile dynamics PLoS ONE 8(1):e54441submitted materials
119Maki-Marttunen T, Acimovic J, Ruohonen K, Linne ML (2013) Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework PLOS ONE 8(7):e69373submitted materials
120Marasco A, Limongiello A, Migliore M (2013) Using Strahler`s analysis to reduce up to 200-fold the run time of realistic neuron model Sci. Rep. 3:2934[PubMed]submitted materials
121Masquelier T, Deco G (2013) Network bursting dynamics in excitatory cortical neuron cultures results from the combination of different adaptive mechanisms PLoS ONE 8(10):e75824[PubMed]submitted materials
122Mattioni M, Le Novere N (2013) Integration of Biochemical and Electrical Signaling-Multiscale Model of the Medium Spiny Neuron of the Striatum. PLoS One 8:e66811[PubMed]submitted materials
123McDougal RA, Hines ML, Lytton WW (2013) Reaction-diffusion in the NEURON simulator. Front Neuroinform 7:28[PubMed]obtained materials
124McDougal RA, Hines ML, Lytton WW (2013) Water-tight membranes from neuronal morphology files Journal of Neuroscience Methods 220(2):167-78[PubMed]both
125Miceli F, Soldovieri MV, Ambrosino P, Barrese V, Migliore M, Cilio MR, Taglialatela M (2013) Genotype-phenotype correlations in neonatal epilepsies caused by mutations in the voltage sensor of Kv7.2 potassium channel subunits. Proc Natl Acad Sci U S A 110(11):4386-91[PubMed]submitted materials
126Migliore M, McTavish T (2013) Olfactory Computation in Mitral-Granule Cell Circuits Encyclopedia of Computational Neuroscience, Jaeger D, Jung R, ed. submitted materials
127Montes J, Gomez E, Merchan-Perez A, Defelipe J, Pena JM (2013) A machine learning method for the prediction of receptor activation in the simulation of synapses. PLoS One 8:e68888[PubMed]submitted materials
128Neymotin SA, Chadderdon GL, Kerr CC, Francis JT, Lytton WW (2013) Reinforcement learning of 2-joint virtual arm reaching in a computer model of sensorimotor cortex Neural Computation 25(12):3263-93[PubMed]submitted materials
129Neymotin SA, Hilscher MM, Moulin TC, Skolnick Y, Lazarewicz MT, Lytton WW (2013) Ih Tunes Theta/Gamma Oscillations and Cross-Frequency Coupling In an In Silico CA3 Model PLoS ONE 8(10):e76285[PubMed]submitted materials
130Nicola W, Campbell SA (2013) Bifurcations of large networks of two-dimensional integrate and fire neurons. J Comput Neurosci[PubMed]submitted materials
131Niculescu D, Hirdes W, Hornig S, Pongs O, Schwarz JR (2013) Erg Potassium Currents of Neonatal Mouse Purkinje Cells Exhibit Fast Gating Kinetics and Are Inhibited by mGluR1 Activation J. Neurosci. 33(42):16729-16740obtained materials
132Ovsepian SV, Steuber V, Le Berre M, O`Hara L, O`Leary VB, Dolly JO (2013) A defined heteromeric KV1 channel stabilizes the intrinsic pacemaking and regulates the output of deep cerebellar nuclear neurons to thalamic targets. J Physiol 591:1771-91[PubMed]submitted materials
133Papoutsi A, Sidiropoulou K, Cutsuridis V, Poirazi P (2013) Induction and modulation of persistent activity in a layer V PFC microcircuit model. Front Neural Circuits 7:161[PubMed]submitted materials
134Parekh R, Ascoli GA (2013) Neuronal morphology goes digital: a research hub for cellular and system neuroscience. Neuron 77:1017-38[PubMed]mentions
135Pavlov I, Savtchenko LP, Song I, Koo J, Pimashkin A, Rusakov DA, Semyanov A (2013) Tonic GABAA conductance bidirectionally controls interneuron firing pattern and synchronization in the CA3 hippocampal network. Proc Natl Acad Sci U S A[PubMed]obtained materials
136Pilly PK, Grossberg S (2013) Spiking neurons in a hierarchical self-organizing map model can learn to develop spatial and temporal properties of entorhinal grid cells and hippocampal place cells PLOS One 8(4):e60599submitted materials
137Rowan MS,Neymotin SA (2013) Synaptic Scaling Balances Learning in a Spiking Model of Neocortex Adaptive and Natural Computing Algorithms, Tomassini M, Antonioni A, Daolio F, Buesser P, ed. pp.20submitted materials
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