| Models |
| A Fast Rhythmic Bursting Cell: in vivo cell modeling (Lee 2007) |
| A Model of Multiple Spike Initiation Zones in the Leech C-interneuron (Crisp 2009) |
| A dynamic model of the canine ventricular myocyte (Hund, Rudy 2004) |
| A kinetic model unifying presynaptic short-term facilitation and depression (Lee et al. 2009) |
| A multi-compartment model for interneurons in the dLGN (Halnes et al. 2011) |
| A network model of tail withdrawal in Aplysia (White et al 1993) |
| A set of reduced models of layer 5 pyramidal neurons (Bahl et al. 2012) |
| A simplified cerebellar Purkinje neuron (the PPR model) (Brown et al. 2010) |
| A single column thalamocortical network model (Traub et al 2005) |
| A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013) |
| AP back-prop. explains threshold variability and rapid rise (McCormick et al. 2007, Yu et al. 2008) |
| Action Potential initiation and backpropagation in Neocortical L5 Pyramidal Neuron (Hu et al. 2009) |
| Action potential reconstitution from measured current waveforms (Alle et al. 2009) |
| Activity constraints on stable neuronal or network parameters (Olypher and Calabrese 2007) |
| Activity dependent changes in motoneurones (Dai Y et al 2002, Gardiner et al 2002) |
| Activity dependent conductances in a neuron model (Liu et al. 1998) |
| Afferent Integration in the NAcb MSP Cell (Wolf et al. 2005) |
| Amyloid beta (IA block) effects on a model CA1 pyramidal cell (Morse et al. 2010) |
| Amyloid-beta effects on release probability and integration at CA3-CA1 synapses (Romani et al. 2013) |
| An allosteric kinetics of NMDARs in STDP (Urakubo et al. 2008) |
| An integrative model of the cardiac ventricular myocytes (Greenstein and Winslow 2002) |
| Availability of low-threshold Ca2+ current in retinal ganglion cells (Lee SC et al. 2003) |
| Axonal NaV1.6 Sodium Channels in AP Initiation of CA1 Pyramidal Neurons (Royeck et al. 2008) |
| Axonal Projection and Interneuron Types (Helmstaedter et al. 2008) |
| Axonal gap junctions produce fast oscillations in cerebellar Purkinje cells (Traub et al. 2008) |
| Basal ganglia-thalamic network model for deep brain stimulation (So et al. 2011) |
| Biophysical and phenomenological models of spike-timing dependent plasticity (Badoual et al. 2006) |
| Biophysically detailed model of the mouse sino-atrial node cell (Kharche et al. 2011) |
| Biophysically realistic neural modeling of the MEG mu rhythm (Jones et al. 2009) |
| Boundary effects influence velocity in transverse propagation of cardiac APs (Sperelakis et al 2005) |
| Burst induced synaptic plasticity in Apysia sensorimotor neurons (Phares et al 2003) |
| Bursting activity of neuron R15 in Aplysia (Canavier et al 1991, Butera et al 1995) |
| Bursting and resonance in cerebellar granule cells (D'Angelo et al 2001) |
| CA1 pyramidal cell: reconstructed axonal arbor and failures at weak gap junctions (Vladimirov 2011) |
| CA1 pyramidal neuron to study INaP properties and repetitive firing (Uebachs et al. 2010) |
| CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) |
| CA1 pyramidal neuron: effects of R213Q and R312W Kv7.2 mutations (Miceli et al. 2013) |
| CA1 pyramidal neuron: functional significance of axonal Kv7 channels (Shah et al. 2008) |
| CA1 pyramidal neuron: synaptically-induced bAP predicts synapse location (Sterratt et al. 2012) |
| CA1 pyramidal neurons: effects of a Kv7.2 mutation (Miceli et al. 2009) |
| CA3 Pyramidal Neuron (Migliore et al 1995) |
| CA3 pyramidal cell: rhythmogenesis in a reduced Traub model (Pinsky, Rinzel 1994) |
| CA3 pyramidal neuron (Lazarewicz et al 2002) |
| CA3 pyramidal neuron (Safiulina et al. 2010) |
| CA3 pyramidal neuron: firing properties (Hemond et al. 2008) |
| CN bushy, stellate neurons (Rothman, Manis 2003) |
| CN bushy, stellate neurons (Rothman, Manis 2003) (Brian) |
| Ca(2+) oscillations based on Ca-induced Ca-release (Dupont et al 1991) |
| Calcium and potassium currents of olfactory bulb juxtaglomerular cells (Masurkar and Chen 2011) |
| Calcium spikes in basal dendrites (Kampa and Stuart 2006) |
| Cardiac Atrial Cell (Courtemanche et al 1998) |
| Cardiac Atrial Cell (Courtemanche et al 1998) (C++) |
| Cardiac action potentials and pacemaker activity of sinoatrial node (DiFrancesco & Noble 1985) |
| Cerebellar Golgi cell (Solinas et al. 2007a, 2007b) |
| Cerebellar Nucleus Neuron (Steuber, Schultheiss, Silver, De Schutter & Jaeger, 2010) |
| Cerebellar Purkinje Cell: resurgent Na current and high frequency firing (Khaliq et al 2003) |
| Cerebellar purkinje cell (De Schutter and Bower 1994) |
| Cerebellar purkinje cell: K and Ca channels regulate APs (Miyasho et al 2001) |
| Cerebellar purkinje cell: interacting Kv3 and Na currents influence firing (Akemann, Knopfel 2006) |
| Comparison of full and reduced globus pallidus models (Hendrickson 2010) |
| Compartmentalization of GABAergic inhibition by dendritic spines (Chiu et al. 2013) |
| Competing oscillator 5-cell circuit and Parameterscape plotting (Gutierrez et al. 2013) |
| Complex CA1-neuron to study AP initiation (Wimmer et al. 2010) |
| Computer model of clonazepam`s effect in thalamic slice (Lytton 1997) |
| Computer simulations of neuron-glia interactions mediated by ion flux (Somjen et al. 2008) |
| Contrast invariance by LGN synaptic depression (Banitt et al. 2007) |
| Controlling KCa channels with different Ca2+ buffering models in Purkinje cell (Anwar et al. 2010) |
| D2 dopamine receptor modulation of interneuronal activity (Maurice et al. 2004) |
| Data-driven, HH-type model of the lateral pyloric (LP) cell in the STG (Nowotny et al. 2008) |
| Dendritic L-type Ca currents in motoneurons (Carlin et al 2000) |
| Dendritic Na+ spike initiation and backpropagation of APs in active dendrites (Nevian et al. 2007) |
| Dendritic processing of excitatory synaptic input in GnRH neurons (Roberts et al. 2006) |
| Dendritica (Vetter et al 2001) |
| Dentate gyrus granule cell: calcium and calcium-dependent conductances (Aradi and Holmes 1999) |
| Dentate gyrus network model (Santhakumar et al 2005) |
| Deterministic chaos in a mathematical model of a snail neuron (Komendantov and Kononenko 1996) |
| Differences between type A and B photoreceptors (Blackwell 2006) |
| Differential modulation of pattern and rate in a dopamine neuron model (Canavier and Landry 2006) |
| Dopaminergic cell bursting model (Kuznetsov et al 2006) |
| Dynamical model of olfactory bulb mitral cell (Rubin, Cleland 2006) |
| ERG current in repolarizing plateau potentials in dopamine neurons (Canavier et al 2007) |
| Effect of voltage sensitive fluorescent proteins on neuronal excitability (Akemann et al. 2009) |
| Effects of Acetyl-L-carnitine on neural transmission (Lombardo et al 2004) |
| Effects of KIR current inactivation in NAc Medium Spiny Neurons (Steephen and Manchanda 2009) |
| Electrically-coupled Retzius neurons (Vazquez et al. 2009) |
| Elementary mechanisms producing facilitation of Cav2.1 (P/Q-type) channels |
| Emergent properties of networks of biological signaling pathways (Bhalla, Iyengar 1999) |
| Engaging distinct oscillatory neocortical circuits (Vierling-Claassen et al. 2010) |
| Enhanced Excitability in Hermissenda: modulation by 5-HT (Cai et al 2003) |
| Epilepsy may be caused by very small functional changes in ion channels (Thomas et al. 2009) |
| Excitability of PFC Basal Dendrites (Acker and Antic 2008) |
| Excitation-contraction coupling/mitochondrial energetics (ECME) model (Cortassa et al. 2006) |
| Failure of Deep Brain Stimulation in a basal ganglia neuronal network model (Dovzhenok et al. 2013) |
| Fast oscillations in inhibitory networks (Maex, De Schutter 2003) |
| Frog second-order vestibular neuron models (Rössert et al. 2011) |
| GPi/GPe neuron models (Johnson and McIntyre 2008) |
| Global structure, robustness, and modulation of neuronal models (Goldman et al. 2001) |
| Globus pallidus multi-compartmental model neuron with realistic morphology (Gunay et al. 2008) |
| Globus pallidus neuron models with differing dendritic Na channel expression (Edgerton et al., 2010) |
| Half-center oscillator database of leech heart interneuron model (Doloc-Mihu & Calabrese 2011) |
| High frequency stimulation of the Subthalamic Nucleus (Rubin and Terman 2004) |
| Hodgkin-Huxley model of persistent activity in PFC neurons (Winograd et al. 2008) (NEURON python) |
| Hodgkin-Huxley model of persistent activity in prefrontal cortex neurons (Winograd et al. 2008) |
| Hodgkin-Huxley models of different classes of cortical neurons (Pospischil et al. 2008) |
| Homosynaptic plasticity in the tail withdrawal circuit (TWC) of Aplysia (Baxter and Byrne 2006) |
| Hypocretin and Locus Coeruleus model neurons (Carter et al 2012) |
| Hysteresis in voltage gating of HCN channels (Elinder et al 2006, Mannikko et al 2005) |
| IA and IT interact to set first spike latency (Molineux et al 2005) |
| Impact of dendritic atrophy on intrinsic and synaptic excitability (Narayanan & Chattarji, 2010) |
| Impact of dendritic size and topology on pyramidal cell burst firing (van Elburg and van Ooyen 2010) |
| Inferior Olive, subthreshold oscillations (Torben-Nielsen, Segev, Yarom 2012) |
| Interacting synaptic conductances during, distorting, voltage clamp (Poleg-Polsky and Diamond 2011) |
| Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007) |
| Investigation of different targets in deep brain stimulation for Parkinson`s (Pirini et al. 2009) |
| Ionic basis of alternans and Timothy Syndrome (Fox et al. 2002), (Zhu and Clancy 2007) |
| Ionic mechanisms of bursting in CA3 pyramidal neurons (Xu and Clancy 2008) |
| Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006) |
| KV1 channel governs cerebellar output to thalamus (Ovsepian et al. 2013) |
| Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011) |
| Kv4.3, Kv1.4 encoded K channel in heart cells & tachy. (Winslow et al 1999, Greenstein et al 2000) |
| L5b PC model constrained for BAC firing and perisomatic current step firing (Hay et al., 2011) |
| LGMD Variability and logarithmic compression in dendrites (Jones and Gabbiani, 2012, 2012B) |
| Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008) |
| Layer V PFC pyramidal neuron used to study persistent activity (Sidiropoulou & Poirazi 2012) |
| Leech Mechanosensory Neurons: Synaptic Facilitation by Reflected APs (Baccus 1998) |
| Leech S Cell: Modulation of Excitability by Serotonin (Burrell and Crisp 2007) |
| Leech heart interneuron network model (Hill et al 2001, 2002) |
| Linear vs non-linear integration in CA1 oblique dendrites (Gómez González et al. 2011) |
| Lobster STG pyloric network model with calcium sensor (Gunay & Prinz 2010) (Prinz et al. 2004) |
| Low Threshold Calcium Currents in TC cells (Destexhe et al 1998) |
| Low dose of dopamine may stimulate prolactin secretion by increasing K currents (Tabak et al. 2006) |
| MEG of Somatosensory Neocortex (Jones et al. 2007) |
| Mammalian Ventricular Cell (Beeler and Reuter 1977) |
| Mathematical model for windup (Aguiar et al. 2010) |
| Mechanisms of fast rhythmic bursting in a layer 2/3 cortical neuron (Traub et al 2003) |
| Medial vestibular neuron models (Quadroni and Knopfel 1994) |
| Model of DARPP-32 phosphorylation in striatal medium spiny neurons (Lindskog et al. 2006) |
| Modeling interactions in Aplysia neuron R15 (Yu et al 2004) |
| Modelling reduced excitability in aged CA1 neurons as a Ca-dependent process (Markaki et al. 2005) |
| Modulation of neuronal synchronization by D4 dopamine receptor-mediated phospholipid methylation |
| Modulation of septo-hippocampal theta activity by GABAA receptors (Hajos et al. 2004) |
| Morris-Lecar model of the barnacle giant muscle fiber (Morris, Lecar 1981) |
| Multicompartmental cerebellar granule cell model (Diwakar et al. 2009) |
| Multiple mechanisms of short term plasticity at the calyx of Held (Hennig et al. 2008) |
| Multiple modes of a conditional neural oscillator (Epstein, Marder 1990) |
| MyFirstNEURON (Houweling, Sejnowski 1997) |
| NMDA subunit effects on Calcium and STDP (Evans et al. 2012) |
| Na channel mutations in the dentate gyrus (Thomas et al. 2009) |
| Nav1.6 sodium channel model in globus pallidus neurons (Mercer et al. 2007) |
| Neocortical pyramidal neuron: deep; effects of dopamine (Durstewitz et al 2000) |
| Network model of the granular layer of the cerebellar cortex (Maex, De Schutter 1998) |
| Network model with neocortical architecture (Anderson et al. 2011 plus under review paper) |
| Nigral dopaminergic neurons: effects of ethanol on Ih (Migliore et al. 2008) |
| Nodose sensory neuron (Schild et al. 1994, Schild and Kunze 1997) |
| O-LM interneuron model (Lawrence et al. 2006) |
| Olfactory Bulb Network (Davison et al 2003) |
| Olfactory Mitral Cell (Bhalla, Bower 1993) |
| Olfactory Mitral Cell (Davison et al 2000) |
| Olfactory bulb mitral cell gap junction NN model: burst firing and synchrony (O`Connor et al. 2012) |
| Optimal deep brain stimulation of the subthalamic nucleus-a computational study (Feng et al. 2007) |
| Paired turbulence and light effect on calcium increase in Hermissenda (Blackwell 2004) |
| Paradoxical GABA-mediated excitation (Lewin et al. 2012) |
| Parameter estimation for Hodgkin-Huxley based models of cortical neurons (Lepora et al. 2011) |
| Parametric computation and persistent gamma in a cortical model (Chambers et al. 2012) |
| Permeation and inactivation of CaV1.2 Ca2+ channels (Babich et al. 2007) |
| Phase response curve of a globus pallidal neuron (Fujita et al. 2011) |
| Prediction for the presence of voltage-gated Ca2+ channels in myelinated central axons (Brown 2003) |
| Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) |
| Pyramidal Neuron Deep, Superficial; Aspiny, Stellate (Mainen and Sejnowski 1996) |
| Pyramidal Neuron Deep: Constrained by experiment (Dyhrfjeld-Johnsen et al. 2005) |
| Pyramidal Neuron: Deep, Thalamic Relay and Reticular, Interneuron (Destexhe et al 1998, 2001) |
| Pyramidal neuron coincidence detection tuned by dendritic branching pattern (Schaefer et al 2006) |
| Pyramidal neuron conductances state and STDP (Delgado et al. 2010) |
| Rapid desynchronization of an electrically coupled Golgi cell network (Vervaeke et al. 2010) |
| Rat phrenic motor neuron (Amini et al 2004) |
| Rat subthalamic projection neuron (Gillies and Willshaw 2006) |
| Reciprocal regulation of rod and cone synapse by NO (Kourennyi et al 2004) |
| Reconstructing cerebellar granule layer evoked LFP using convolution (ReConv) (Diwakar et al. 2011) |
| Regulation of firing frequency in a midbrain dopaminergic neuron model (Kuznetsova et al. 2010) |
| Regulation of the firing pattern in dopamine neurons (Komendantov et al 2004) |
| Rejuvenation model of dopamine neuron (Chan et al. 2007) |
| Retinal Ganglion Cell: I-CaN and I-CaL (Benison et al. 2001) |
| Rhesus Monkey Layer 3 Pyramidal Neurons: V1 vs PFC (Amatrudo, Weaver et al. 2012) |
| Ribbon Synapse (Sikora et al 2005) |
| Rod photoreceptor (Barnes and Hille 1989, Publio et al. 2006, Kourennyi and Liu et al. 2004) |
| STD-dependent and independent encoding of Input irregularity as spike rate (Luthman et al. 2011) |
| STDP depends on dendritic synapse location (Letzkus et al. 2006) |
| Salamander retinal ganglian cells: morphology influences firing (Sheasby, Fohlmeister 1999) |
| Salamander retinal ganglion cell: ion channels (Fohlmeister, Miller 1997) |
| Simulated light response in rod photoreceptors (Liu and Kourennyi 2004) |
| Simulation study of Andersen-Tawil syndrome (Sung et al 2006) |
| Sleep-wake transitions in corticothalamic system (Bazhenov et al 2002) |
| Space clamp problems in neurons with voltage-gated conductances (Bar-Yehuda and Korngreen 2008) |
| Spike frequency adaptation in the LGMD (Peron and Gabbiani 2009) |
| Spike timing detection in different forms of LTD (Doi et al 2005) |
| Spikes,synchrony,and attentive learning by laminar thalamocort. circuits (Grossberg & Versace 2007) |
| Spine fusion and branching effects synaptic response (Rusakov et al 1996, 1997) |
| Spine neck plasticity controls postsynaptic calcium signals (Grunditz et al. 2008) |
| Stochastic automata network Markov model descriptors of coupled Ca2+ channels (Nguyen et al. 2005) |
| Studies of stimulus parameters for seizure disruption using NN simulations (Anderson et al. 2007) |
| Study of augmented Rubin and Terman 2004 deep brain stim. model in Parkinsons (Pascual et al. 2006) |
| Superior paraolivary nucleus neuron (Kopp-Scheinpflug et al. 2011) |
| Synaptic integration in a model of granule cells (Gabbiani et al 1994) |
| Synaptic integration in tuft dendrites of layer 5 pyramidal neurons (Larkum et al. 2009) |
| T channel currents (Vitko et al 2005) |
| T-type Ca current in thalamic neurons (Wang et al 1991) |
| T-type Calcium currents (McRory et al 2001) |
| Temporal decorrelation by intrinsic cellular dynamics (Wang et al 2003) |
| Temporal integration by stochastic recurrent network (Okamoto et al. 2007) |
| Thalamic Relay Neuron: I-T current (Williams, Stuart 2000) |
| Thalamic Reticular Network (Destexhe et al 1994) |
| Thalamic interneuron multicompartment model (Zhu et al. 1999) |
| Thalamic neuron: Modeling rhythmic neuronal activity (Meuth et al. 2005) |
| Thalamic quiescence of spike and wave seizures (Lytton et al 1997) |
| Thalamic reticular neurons: the role of Ca currents (Destexhe et al 1996) |
| Thalamic transformation of pallidal input (Hadipour-Niktarash 2006) |
| Thalamocortical and Thalamic Reticular Network (Destexhe et al 1996) |
| Thalamocortical augmenting response (Bazhenov et al 1998) |
| Thalamocortical model of spike and wave seizures (Suffczynski et al. 2004) |
| Theta phase precession in a model CA3 place cell (Baker and Olds 2007) |
| Tonic neuron in spinal lamina I: prolongation of subthreshold depol. (Prescott and De Koninck 2005) |
| Touch Sensory Cells (T Cells) of the Leech (Cataldo et al. 2004) (Scuri et al. 2007) |
| Transmitter release and Ca diffusion models (Yamada and Zucker 1992) |
| Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006) |
| Two-cell inhibitory network bursting dynamics captured in a one-dimensional map (Matveev et al 2007) |
| Ventricular cell model (Guinea-pig-type) (Luo, Rudy 1991, +10 other papers!) |
