| Models |
| A Moth MGC Model-A HH network with quantitative rate reduction (Buckley & Nowotny 2011) |
| A Neural mass computational model of the Thalamocorticothalamic circuitry (Bhattacharya et al. 2011) |
| A contracting model of the basal ganglia (Girard et al. 2008) |
| A detailed and fast model of extracellular recordings (Camunas-Mesa & Qurioga 2013) |
| A dynamical model of the basal ganglia (Leblois et al 2006) |
| A large-scale model of the functioning brain (spaun) (Eliasmith et al. 2012) |
| A microcircuit model of the frontal eye fields (Heinzle et al. 2007) |
| A model of the femur-tibia control system in stick insects (Stein et al. 2008) |
| A model of the temporal pattern generator of C. elegans egg-laying behavior (Zhang et. al 2010) |
| A network model of tail withdrawal in Aplysia (White et al 1993) |
| A network model of the vertebrate retina (Publio et al. 2009) |
| A neural model of Parkinson`s disease (Cutsuridis and Perantonis 2006, Cutsuridis 2006, 2007) |
| A reinforcement learning example (Sutton and Barto 1998) |
| A simulation method for the firing sequences of motor units (Jiang et al 2006) |
| A single column thalamocortical network model (Traub et al 2005) |
| A spiking model of cortical broadcast and competition (Shanahan 2008) |
| A theory of ongoing activity in V1 (Goldberg et al 2004) |
| A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013) |
| Activity constraints on stable neuronal or network parameters (Olypher and Calabrese 2007) |
| Alternative time representation in dopamine models (Rivest et al. 2009) |
| An attractor network model of grid cells and theta-nested gamma oscillations (Pastoll et al., 2013) |
| An oscillatory neural model of multiple object tracking (Kazanovich and Borisyuk 2006) |
| Asynchronous irregular and up/down states in excitatory and inhibitory NNs (Destexhe 2009) |
| Axonal gap junctions produce fast oscillations in cerebellar Purkinje cells (Traub et al. 2008) |
| Basal ganglia network model of subthalamic deep brain stimulation (Hahn and McIntyre 2010) |
| Basal ganglia-thalamic network model for deep brain stimulation (So et al. 2011) |
| Basal ganglia-thalamocortical loop model of action selection (Humphries and Gurney 2002) |
| Biologically-plausible models for spatial navigation (Cannon et al 2003) |
| Biophysical model for field potentials of networks of I&F neurons (beim Graben & Serafim 2013) |
| Biophysically realistic neural modeling of the MEG mu rhythm (Jones et al. 2009) |
| Broadening of activity with flow across neural structures (Lytton et al. 2008) |
| Burst induced synaptic plasticity in Apysia sensorimotor neurons (Phares et al 2003) |
| Bursting respiratory net: clustered architecture gives large phase diff`s (Fietkiewicz et al 2011) |
| CA1 pyramidal cell: reconstructed axonal arbor and failures at weak gap junctions (Vladimirov 2011) |
| Ca2+-activated I_CAN and synaptic depression promotes network-dependent oscil. (Rubin et al. 2009) |
| Cancelling redundant input in ELL pyramidal cells (Bol et al. 2011) |
| Cat auditory nerve model (Zilany and Bruce 2006, 2007) |
| Cell splitting in neural networks extends strong scaling (Hines et al. 2008) |
| Cerebellar cortex oscil. robustness from Golgi cell gap jncs (Simoes de Souza and De Schutter 2011) |
| Cerebellar gain and timing control model (Yamazaki & Tanaka 2007)(Yamazaki & Nagao 2012) |
| Classic model of the Tritonia Swim CPG (Getting, 1989) |
| Cochlear implant models (Bruce et al. 1999a, b, c, 2000) |
| Coding of stimulus frequency by latency in thalamic networks (Golomb et al 2005) |
| Competing oscillator 5-cell circuit and Parameterscape plotting (Gutierrez et al. 2013) |
| Competition for AP initiation sites in a circuit controlling simple learning (Cruz et al. 2007) |
| Competition model of pheromone ratio detection (Zavada et al. 2011) |
| Composite spiking network/neural field model of Parkinsons (Kerr et al 2013) |
| Computational Model of a Central Pattern Generator (Cataldo et al 2006) |
| Computational Surgery (Lytton et al. 2011) |
| Computational aspects of feedback in neural circuits (Maass et al 2006) |
| Computer model of clonazepam`s effect in thalamic slice (Lytton 1997) |
| Computing with neural synchrony (Brette 2012) |
| Contribution of ATP-sensitive potassium channels in the neuronal network (Huang et al. 2009) |
| Cortex learning models (Weber at al. 2006, Weber and Triesch, 2006, Weber and Wermter 2006/7) |
| Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009) |
| Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) |
| Dentate gyrus network model (Santhakumar et al 2005) |
| Development of orientation-selective simple cell receptive fields (Rishikesh and Venkatesh, 2003) |
| Distributed representation of perceptual categories in the auditory cortex (Kim and Bao 2008) |
| Distributed synaptic plasticity and spike timing (Garrido et al. 2013) |
| Duration-tuned neurons from the inferior colliculus of the big brown bat (Aubie et al. 2009) |
| Duration-tuned neurons from the inferior colliculus of vertebrates (Aubie et al. 2012) |
| Dynamic dopamine modulation in the basal ganglia: Learning in Parkinson (Frank et al 2004,2005) |
| Efficient simulation environment for modeling large-scale cortical processing (Richert et al. 2011) |
| Electrically-coupled Retzius neurons (Vazquez et al. 2009) |
| Emergence of physiological oscillation frequencies in neocortex simulations (Neymotin et al. 2011) |
| Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009) |
| Engaging distinct oscillatory neocortical circuits (Vierling-Claassen et al. 2010) |
| Epilepsy may be caused by very small functional changes in ion channels (Thomas et al. 2009) |
| Epileptic seizure model with Morris-Lecar neurons (Beverlin and Netoff 2011) |
| Event-related simulation of neural processing in complex visual scenes (Mihalas et al. 2011) |
| Excitatory and inhibitory interactions in populations of model neurons (Wilson and Cowan 1972) |
| FRAT: An amygdala-centered model of fear conditioning (Krasne et al. 2011) |
| Failure of Deep Brain Stimulation in a basal ganglia neuronal network model (Dovzhenok et al. 2013) |
| Fast oscillations in inhibitory networks (Maex, De Schutter 2003) |
| Fast population coding (Huys et al. 2007) |
| Feedforward heteroassociative network with HH dynamics (Lytton 1998) |
| Fixed point attractor (Hasselmo et al 1995) |
| Formation of synfire chains (Jun and Jin 2007) |
| Fronto-parietal visuospatial WM model with HH cells (Edin et al 2007) |
| Functional consequences of cortical circuit abnormalities on gamma in schizophrenia (Spencer 2009) |
| Gamma and theta rythms in biophysical models of hippocampus circuits (Kopell et al. 2011) |
| Gamma oscillations in hippocampal interneuron networks (Bartos et al 2002) |
| Gamma oscillations in hippocampal interneuron networks (Wang, Buzsaki 1996) |
| Gap junction coupled network of striatal fast spiking interneurons (Hjorth et al. 2009) |
| Gap-junction coupled network activity depends on coupled dendrites diameter (Gansert et al. 2007) |
| Generating coherent patterns of activity from chaotic neural networks (Sussillo and Abbott 2009) |
| Generating oscillatory bursts from a network of regular spiking neurons (Shao et al. 2009) |
| Grid cell oscillatory interference with noisy network oscillators (Zilli and Hasselmo 2010) |
| Grid cell spatial firing models (Zilli 2012) |
| Half-center oscillator database of leech heart interneuron model (Doloc-Mihu & Calabrese 2011) |
| High dimensional dynamics and low dimensional readouts in neural microcircuits (Haeusler et al 2006) |
| High frequency oscillations in a hippocampal computational model (Stacey et al. 2009) |
| High frequency stimulation of the Subthalamic Nucleus (Rubin and Terman 2004) |
| Hippocampal basket cell gap junction network dynamics (Saraga et al. 2006) |
| Hippocampal context-dependent retrieval (Hasselmo and Eichenbaum 2005) |
| Hippocampus temporo-septal engram shift model (Lytton 1999) |
| Homosynaptic plasticity in the tail withdrawal circuit (TWC) of Aplysia (Baxter and Byrne 2006) |
| Hopfield and Brody model (Hopfield, Brody 2000) |
| Hopfield and Brody model (Hopfield, Brody 2000) (NEURON+python) |
| Human Attentional Networks: A Connectionist Model (Wang and Fan 2007) |
| Human sleep/wake cycle (Rempe et al. 2010) |
| Huntington`s disease model (Gambazzi et al. 2010) |
| Hyperconnectivity, slow synapses in PFC mental retardation and autism model (Testa-Silva et al 2011) |
| I&F models of ACh modulation in the olfactory bulb and piriform cortex (de Almeida et al. 2012) |
| Inferior Olive, subthreshold oscillations (Torben-Nielsen, Segev, Yarom 2012) |
| Information-processing in lamina-specific cortical microcircuits (Haeusler and Maass 2006) |
| Inhibitory control by an integral feedback signal in prefrontal cortex (Miller and Wang 2006) |
| Investigation of different targets in deep brain stimulation for Parkinson`s (Pirini et al. 2009) |
| Irregular oscillations produced by cyclic recurrent inhibition (Friesen, Friesen 1994) |
| Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006) |
| JitCon: Just in time connectivity for large spiking networks (Lytton et al. 2008) |
| KInNeSS : a modular framework for computational neuroscience (Versace et al. 2008) |
| Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011) |
| Laminar analysis of excitatory circuits in vibrissal motor and sensory cortex (Hooks et al. 2011) |
| Laminar connectivity matrix simulation (Weiler et al 2008) |
| Large cortex model with map-based neurons (Rulkov et al 2004) |
| Large scale model of the olfactory bulb (Yu et al., 2013) |
| Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008) |
| Learning spatial transformations through STDP (Davison, Frégnac 2006) |
| Leech heart interneuron network model (Hill et al 2001, 2002) |
| Linking STDP and Dopamine action to solve the distal reward problem (Izhikevich 2007) |
| Lobster STG pyloric network model with calcium sensor (Gunay & Prinz 2010) (Prinz et al. 2004) |
| Loss of phase-locking in non-weakly coupled inhib. networks of type-I neurons (Oh and Matveev 2009) |
| MEG of Somatosensory Neocortex (Jones et al. 2007) |
| Maximum entropy model to predict spatiotemporal spike patterns (Marre et al. 2009) |
| Mean Field Equations for Two-Dimensional Integrate and Fire Models (Nicola and Campbell, 2013) |
| Mechanisms of very fast oscillations in axon networks coupled by gap junctions (Munro, Borgers 2010) |
| Medial reticular formation of the brainstem: anatomy and dynamics (Humphries et al. 2006, 2007) |
| Model of long range transmission of gamma oscillation (Murray 2007) |
| Modeling the effects of dopamine on network synchronization (Komek et al. 2012) |
| Modelling enteric neuron populations and muscle fed-state motor patterns (Chambers et al. 2011) |
| Modular grid cell responses as a basis for hippocampal remapping (Monaco and Abbott 2011) |
| Modulation of neuronal synchronization by D4 dopamine receptor-mediated phospholipid methylation |
| Modulation of septo-hippocampal theta activity by GABAA receptors (Hajos et al. 2004) |
| Motion Clouds: Synthesis of random textures for motion perception (Leon et al. 2012) |
| Multisensory integration in the superior colliculus: a neural network model (Ursino et al. 2009) |
| Multistability of clustered states in a globally inhibitory network (Chandrasekaran et al. 2009) |
| Na channel mutations in the dentate gyrus (Thomas et al. 2009) |
| Neocort. pyramidal cells subthreshold somatic voltage controls spike propagation (Munro Kopell 2012) |
| Network model of the granular layer of the cerebellar cortex (Maex, De Schutter 1998) |
| Network model with dynamic ion concentrations (Ullah et al. 2009) |
| Network model with neocortical architecture (Anderson et al. 2011 plus under review paper) |
| Network recruitment to coherent oscillations in a hippocampal model (Stacey et al. 2011) |
| Network topologies for producing limited sustained activation (Kaiser and Hilgetag 2010) |
| Networks of spiking neurons: a review of tools and strategies (Brette et al. 2007) |
| Neural model of frog ventilatory rhythmogenesis (Horcholle-Bossavit and Quenet 2009) |
| Neural model of two-interval discrimination (Machens et al 2005) |
| Neural modeling of an internal clock (Yamazaki and Tanaka 2008) |
| Neural transformations on spike timing information (Tripp and Eliasmith 2007) |
| Neuronal population models of intracerebral EEG (Wendling et al. 2005) |
| Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012) |
| Numerical Integration of Izhikevich and HH model neurons (Stewart and Bair 2009) |
| Odor supported place cell model and goal navigation in rodents (Kulvicius et al. 2008) |
| Olfactory Bulb Network (Davison et al 2003) |
| Olfactory bulb cluster formation (Migliore et al. 2010) |
| Olfactory bulb mitral and granule cell column formation (Migliore et al. 2007) |
| Olfactory bulb mitral and granule cell: dendrodendritic microcircuits (Migliore and Shepherd 2008) |
| Olfactory bulb mitral cell gap junction NN model: burst firing and synchrony (O`Connor et al. 2012) |
| Olfactory bulb mitral cell: synchronization by gap junctions (Migliore et al 2005) |
| Olfactory bulb network model of gamma oscillations (Bathellier et al. 2006; Lagier et al. 2007) |
| Olfactory bulb network: neurogenetic restructuring and odor decorrelation (Chow et al. 2012) |
| Optimal deep brain stimulation of the subthalamic nucleus-a computational study (Feng et al. 2007) |
| Oscillation and coding in a proposed NN model of insect olfaction (Horcholle-Bossavit et al. 2007) |
| Oscillations, phase-of-firing coding and STDP: an efficient learning scheme (Masquelier et al. 2009) |
| Parallel network simulations with NEURON (Migliore et al 2006) |
| Parametric computation and persistent gamma in a cortical model (Chambers et al. 2012) |
| Persistent synchronized bursting activity in cortical tissues (Golomb et al 2005) |
| Perturbation sensitivity implies high noise and suggests rate coding in cortex (London et al. 2010) |
| Phase oscillator models for lamprey central pattern generators (Varkonyi et al. 2008) |
| Phase precession through acceleration of local theta rhythm (Castro & Aguiar 2011) |
| Polychronization: Computation With Spikes (Izhikevich 2005) |
| Population models of temporal differentiation (Tripp and Eliasmith 2010) |
| Population-level model of the basal ganglia and action selection (Gurney et al 2001, 2004) |
| Prefrontal cortical mechanisms for goal-directed behavior (Hasselmo 2005) |
| Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) |
| Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012) |
| Rapid desynchronization of an electrically coupled Golgi cell network (Vervaeke et al. 2010) |
| Rate model of a cortical RS-FS-LTS network (Hayut et al. 2011) |
| Reconstrucing sleep dynamics with data assimilation (Sedigh-Sarvestani et al., 2012) |
| Regulation of a slow STG rhythm (Nadim et al 1998) |
| Reinforcement learning of targeted movement (Chadderdon et al. 2012) |
| Relative spike time coding and STDP-based orientation selectivity in V1 (Masquelier 2012) |
| Respiratory central pattern generator network in mammalian brainstem (Rubin et al. 2009) |
| Response properties of neocort. neurons to temporally modulated noisy inputs (Koendgen et al. 2008) |
| Reward modulated STDP (Legenstein et al. 2008) |
| Robust Reservoir Generation by Correlation-Based Learning (Yamazaki & Tanaka 2008) |
| Roles of subthalamic nucleus and DBS in reinforcement conflict-based decision making (Frank 2006) |
| S cell network (Moss et al 2005) |
| STDP allows fast rate-modulated coding with Poisson-like spike trains (Gilson et al. 2011) |
| STDP promotes synchrony of inhibitory networks in the presence of heterogeneity (Talathi et al 2008) |
| Scaling self-organizing maps to model large cortical networks (Bednar et al 2004) |
| Sensory feedback in an oscillatory interference model of place cell activity (Monaco et al. 2011) |
| Simulation studies on mechanisms of levetiracetam-mediated inhibition of IK(DR) (Huang et al. 2009) |
| Simulation system of spinal cord motor nuclei and assoc. nerves and muscles (Cisi and Kohn 2008) |
| Sleep-wake transitions in corticothalamic system (Bazhenov et al 2002) |
| Slow wave propagation in the guinea-pig gastric antrum (Hirst et al. 2006, Edwards and Hirst 2006) |
| Small world networks of Type I and Type II Excitable Neurons (Bogaard et al. 2009) |
| Software for teaching neurophysiology of neuronal circuits (Grisham et al. 2008) |
| Sparsely connected networks of spiking neurons (Brunel 2000) |
| Spike exchange methods for a Blue Gene/P supercomputer (Hines et al., 2011) |
| Spike-Timing-Based Computation in Sound Localization (Goodman and Brette 2010) |
| Spikes,synchrony,and attentive learning by laminar thalamocort. circuits (Grossberg & Versace 2007) |
| Spiking GridPlaceMap model (Pilly & Grossberg, PLoS One, 2013) |
| Spiking neuron model of the basal ganglia (Humphries et al 2006) |
| Stability of complex spike timing-dependent plasticity in cerebellar learning (Roberts 2007) |
| State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013) |
| Storing serial order in intrinsic excitability: a working memory model (Conde-Sousa & Aguiar 2013) |
| Striatal GABAergic microcircuit, dopamine-modulated cell assemblies (Humphries et al. 2009) |
| Striatal GABAergic microcircuit, spatial scales of dynamics (Humphries et al, 2010) |
| Studies of stimulus parameters for seizure disruption using NN simulations (Anderson et al. 2007) |
| Study of augmented Rubin and Terman 2004 deep brain stim. model in Parkinsons (Pascual et al. 2006) |
| Surround Suppression in V1 via Withdraw of Balanced Local Excitation in V1 (Shushruth 2012) |
| Synaptic information transfer in computer models of neocortical columns (Neymotin et al. 2010) |
| Synaptic plasticity can produce and enhance direction selectivity (Carver et al, 2008) |
| Synaptic scaling balances learning in a spiking model of neocortex (Rowan & Neymotin 2013) |
| Synchrony by synapse location (McTavish et al. 2012) |
| Temporal integration by stochastic recurrent network (Okamoto et al. 2007) |
| Thalamic Reticular Network (Destexhe et al 1994) |
| Thalamic quiescence of spike and wave seizures (Lytton et al 1997) |
| Thalamic transformation of pallidal input (Hadipour-Niktarash 2006) |
| Thalamocortical and Thalamic Reticular Network (Destexhe et al 1996) |
| Thalamocortical augmenting response (Bazhenov et al 1998) |
| The activity phase of postsynaptic neurons (Bose et al 2004) |
| Tonic-clonic transitions in a seizure simulation (Lytton and Omurtag 2007) |
| Towards a virtual C. elegans (Palyanov et al. 2012) |
| Translating network models to parallel hardware in NEURON (Hines and Carnevale 2008) |
| Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006) |
| Two-cell inhibitory network bursting dynamics captured in a one-dimensional map (Matveev et al 2007) |
| Updated Tritonia Swim CPG (Calin-Jagemann et al. 2007) |
| Virtual Retina: biological retina simulator, with contrast gain control (Wohrer and Kornprobst 2009) |
| Working memory circuit with branched dendrites (Morita 2008) |
