ModelDB: Models that contain the Model Topic : Ion Channel Kinetics

Models that contain the Model Topic : Ion Channel Kinetics

(Functions or data that describe the current-voltage relationship of an ion channel either collectively (Hodgkin-Huxley model) or as a collection of open and closed states (Markov model).)

Models
A cardiac cell simulator (Puglisi and Bers 2001), applied to the QT interval (Busjahn et al 2004)
A dynamic model of the canine ventricular myocyte (Hund, Rudy 2004)
A fast model of voltage-dependent NMDA Receptors (Moradi et al. 2012)
A model for pituitary GH(3) lactotroph (Wu and Chang 2005)
A model of beta-adrenergic modulation of IKs in the guinea-pig ventricle (Severi et al. 2009)
A nicotinic acetylcholine receptor kinetic model (Edelstein et al. 1996)
Accurate and fast simulation of channel noise in conductance-based model neurons (Linaro et al 2011)
Action Potential initiation and backpropagation in Neocortical L5 Pyramidal Neuron (Hu et al. 2009)
Activity dependent changes in motoneurones (Dai Y et al 2002, Gardiner et al 2002)
Activity dependent regulation of pacemaker channels by cAMP (Wang et al 2002)
Allosteric gating of K channels (Horrigan et al 1999)
An allosteric kinetics of NMDARs in STDP (Urakubo et al. 2008)
Application of a common kinetic formalism for synaptic models (Destexhe et al 1994)
Availability of low-threshold Ca2+ current in retinal ganglion cells (Lee SC et al. 2003)
Axonal NaV1.6 Sodium Channels in AP Initiation of CA1 Pyramidal Neurons (Royeck et al. 2008)
Bursting and resonance in cerebellar granule cells (D'Angelo et al 2001)
CA1 interneuron: K currents (Lien et al 2002)
CA1 pyramidal neuron: effects of Lamotrigine on dendritic excitability (Poolos et al 2002)
CA1 pyramidal neuron: signal propagation in oblique dendrites (Migliore et al 2005)
CA1 pyramidal neurons: effects of a Kv7.2 mutation (Miceli et al. 2009)
CA1 pyramidal: Stochastic amplification of KCa in Ca2+ microdomains (Stanley et al. 2011)
CN Octopus Cell: Ih current (Bal, Oertel 2000)
Ca-dependent K Channel: kinetics from rat muscle (Moczydlowski, Latorre 1983) NEURON
Ca-dependent K Channel: kinetics from rat muscle (Moczydlowski, Latorre 1983) XPP
Calcium and potassium currents of olfactory bulb juxtaglomerular cells (Masurkar and Chen 2011)
Cardiac Atrial Cell (Courtemanche et al 1998)
Cardiac Atrial Cell (Courtemanche et al 1998) (C++)
Cardiac action potential based on Luo-Rudy phase 1 model (Luo and Rudy 1991), (Wu 2004)
Cerebellar Nucleus Neuron (Steuber, Schultheiss, Silver, De Schutter & Jaeger, 2010)
Cerebellar Purkinje Cell: resurgent Na current and high frequency firing (Khaliq et al 2003)
Cerebellar purkinje cell: interacting Kv3 and Na currents influence firing (Akemann, Knopfel 2006)
Channel parameter estimation from current clamp and neuronal properties (Toth, Crunelli 2001)
Chirp stimulus responses in a morphologically realistic model (Narayanan and Johnston, 2007)
Consequences of HERG mutations in the long QT syndrome (Clancy, Rudy 2001)
DG granule cell: I-A model (Beck et al 1992)
Dendritic L-type Ca currents in motoneurons (Carlin et al 2000)
Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009)
Dorsal root ganglion (DRG) neuronal model (Kovalsky et al. 2009)
ERG current in repolarizing plateau potentials in dopamine neurons (Canavier et al 2007)
Effects of KIR current inactivation in NAc Medium Spiny Neurons (Steephen and Manchanda 2009)
Effects of eugenol on the firing of action potentials in NG108-15 neurons (Huang et al. 2011)
Efffect of propofol on potassium current in cardiac H9c2 cells (Liu et al. 2008)
Efficient Method for Computing Synaptic Conductance (Destexhe et al 1994)
Evaluation of stochastic diff. eq. approximation of ion channel gating models (Bruce 2009)
Excitability of the soma in central nervous system neurons (Safronov et al 2000)
Experimental and modeling studies of desensitization of P2X3 receptors (Sokolova et al. 2006)
FS Striatal interneuron: K currents solve signal-to-noise problems (Kotaleski et al 2006)
Febrile seizure-induced modifications to Ih (Chen et al 2001)
Gap junction coupled network of striatal fast spiking interneurons (Hjorth et al. 2009)
Hodgkin-Huxley model of persistent activity in PFC neurons (Winograd et al. 2008) (NEURON python)
Hodgkin-Huxley model of persistent activity in prefrontal cortex neurons (Winograd et al. 2008)
Hysteresis in voltage gating of HCN channels (Elinder et al 2006, Mannikko et al 2005)
I A in Kenyon cells resemble Shaker currents (Pelz et al 1999)
INa and IKv4.3 heterogeneity in canine LV myocytes (Flaim et al 2006)
IP3R model comparison (Hituri and Linne 2013)
Ion channel modeling with whole cell and a genetic algorithm (Gurkiewicz and Korngreen 2007)
Ionic mechanisms of bursting in CA3 pyramidal neurons (Xu and Clancy 2008)
KV1 channel governs cerebellar output to thalamus (Ovsepian et al. 2013)
Kinetic NMDA receptor model (Kampa et al 2004)
Kinetic properties of voltage gated Na channel (Nayak and Sikdar 2007)
Kinetic synaptic models applicable to building networks (Destexhe et al 1998)
Kinetics of the P2X7 receptor as expressed in Xenopus oocytes (Riedel et al. 2007a,b)
Kv4.3, Kv1.4 encoded K channel in heart cells & tachy. (Winslow et al 1999, Greenstein et al 2000)
Kv4.3, Kv1.4 encoded K(+) channel in heart cells (Greenstein et al 2000) (XPP)
Low Threshold Calcium Currents in TC cells (Destexhe et al 1998)
Mammalian Ventricular Cell (Beeler and Reuter 1977)
Markov Chain-based Stochastic Shielding Hodgkin Huxley Model (Schmandt, Galan 2012)
Markov models of SCN1A (NaV1.1) applied to abnormal gating and epilepsy (Clancy and Kass 2004)
Markovian model for cardiac sodium channel (Clancy, Rudy 2002)
Markovian model for single-channel recordings of Ik_1 in ventricular cells (Matsuoka et al 2003)
Model of calcium oscillations in olfactory cilia (Reidl et al. 2006)
Modeling interactions in Aplysia neuron R15 (Yu et al 2004)
Models of Na channels from a paper on the PKC control of I Na,P (Baker 2005)
MyFirstNEURON (Houweling, Sejnowski 1997)
NMDA receptor saturation (Chen et al 2001)
Na channel mutations in the dentate gyrus (Thomas et al. 2009)
Neocortical Layer I: I-A and I-K (Zhou, Hablitz 1996)
Nerve terminal currents at lizard neuromuscular junction (Lindgren, Moore 1989)
Neurophysiological impact of inactivation pathways in A-type K+ channels (Fineberg et al 2012)
Novel Na current with slow de-inactivation (Tsutsui, Oka 2002)
O-LM interneuron model (Lawrence et al. 2006)
Olfactory Mitral Cell: I-A and I-K currents (Wang et al 1996)
Olfactory Periglomerular Cells: I-h kinetics (Cadetti, Belluzzi 2001)
Olfactory bulb granule cell: effects of odor deprivation (Saghatelyan et al 2005)
Olfactory receptor neuron model (Dougherty et al 2005)
On stochastic diff. eq. models for ion channel noise in Hodgkin-Huxley neurons (Goldwyn et al. 2010)
Periodicity in Na channel properties alters model neuron excitability (Majumdar and Sikdar 2007)
Permeation and inactivation of CaV1.2 Ca2+ channels (Babich et al. 2007)
Properties of aconitine-induced block of KDR current in NG108-15 neurons (Lin et al. 2008)
Pyramidal Neuron Deep: K+ kinetics (Korngreen, Sakmann 2000)
Pyramidal neurons: IKHT offsets activation of IKLT to increase gain (Fernandez et al 2005)
Rapid desynchronization of an electrically coupled Golgi cell network (Vervaeke et al. 2010)
Rat α7 nAChR desensitization is modulated by W55 (Gay et al. 2008)
Rat phrenic motor neuron (Amini et al 2004)
Reflected SDE Hodgkin-Huxley Model (Dangerfield et al. 2012)
Regulation of KCNQ2/KCNQ3 current by G protein cycling (Suh et al 2004)
Resonance properties through Chirp stimulus responses (Narayanan Johnston 2007, 2008)
Retinal Ganglion Cell: I-A (Benison et al 2001)
Retinal Ganglion Cell: I-CaN and I-CaL (Benison et al. 2001)
Retinal Ganglion Cell: I-K (Skaliora et al 1995)
Retinal Ganglion Cell: I-Na,t (Benison et al 2001)
Retinal Photoreceptor: I Potassium (Beech, Barnes 1989)
Rod photoreceptor (Barnes and Hille 1989, Publio et al. 2006, Kourennyi and Liu et al. 2004)
Role of KCNQ1 and IKs in cardiac repolarization (Silva, Rudy 2005)
Role of KCNQ1 and IKs in cardiac repolarization (Silva, Rudy 2005) (XPP)
Salamander retinal ganglion cell: ion channels (Fohlmeister, Miller 1997)
Simulation study of Andersen-Tawil syndrome (Sung et al 2006)
Sodium currents activate without a delay (Baranauskas and Martina 2006)
Space clamp problems in neurons with voltage-gated conductances (Bar-Yehuda and Korngreen 2008)
Spiking GridPlaceMap model (Pilly & Grossberg, PLoS One, 2013)
Spinal Motor Neuron: Na, K_A, and K_DR currents (Safronov, Vogel 1995)
Spontaneous firing caused by stochastic channel gating (Chow, White 1996)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Stochastic Ih and Na-channels in pyramidal neuron dendrites (Kole et al 2006)
Stochastic automata network Markov model descriptors of coupled Ca2+ channels (Nguyen et al. 2005)
Stochastic versions of the Hodgkin-Huxley equations (Goldwyn, Shea-Brown 2011)
Stochastic versions of the Hodgkin-Huxley equations (Goldwyn, Shea-Brown 2011) (pylab)
Subthreshold inact. of K channels modulates APs in bitufted interneurons (Korngreen et al 2005)
Synergistic inhibitory action of oxcarbazepine on INa and IK (Huang et al. 2008)
T channel currents (Vitko et al 2005)
T-type Ca current in thalamic neurons (Wang et al 1991)
T-type Calcium currents (McRory et al 2001)
TTX-R Na+ current effect on cell response (Herzog et al 2001)
TTX-R Na+ current effect on cell response (Herzog et al 2001) (MATLAB)
Temporal decorrelation by intrinsic cellular dynamics (Wang et al 2003)
Thalamic Relay Neuron: I-T current (Williams, Stuart 2000)
Thalamic Relay Neuron: I-h (McCormick, Pape 1990)
Ventricular cell model (Guinea-pig-type) (Luo, Rudy 1991, +10 other papers!)
Zonisamide-induced inhibition of the firing of APs in hippocampal neurons (Huang et al. 2007)

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