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Software for teaching neurophysiology of neuronal circuits (Grisham et al. 2008)
Accession: 121628
"To circumvent the many problems in teaching neurophysiology as a “wet lab,” we developed SWIMMY, a virtual fish that swims by moving its virtual tail by means of a virtual neural circuit. ... Using SWIMMY, students (1) review the basics of neurophysiology, (2) identify the neurons in the circuit, (3) ascertain the neurons’ synaptic interconnections, (4) discover which cells generate the motor pattern of swimming, (5) discover how the rhythm is generated, and finally (6) use an animation that corresponds to the activity of the motoneurons to discover the behavioral effects produced by various lesions and explain them in terms of their neural underpinnings. ..."
Reference: Grisham W, Schottler NA, Krasne FB (2008) SWIMMY: Free Software for Teaching Neurophysiology of Neuronal Circuits Journal of Undergraduate Neuroscience Education (JUNE) 7(1):A1-A8
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Model Information (Click on a link to find other models with that property)
Model Type:  Network;
Brain Region(s)/Organism:  Unknown;
Cell Type(s):   
Channel(s):  I Na,t; I K;  
Gap Junctions:  
Receptor(s):  
Gene(s):  
Transmitter(s):  
Simulation Environment:  Neuron (web link to model);
Model Concept(s):  Oscillations; Tutorial/Teaching;
Implementer(s):  
Search NeuronDB for information about:  I Na,t; I K;
Model files (located externally to ModelDB) Help downloading and running models
SWIMMY — MDCUNE

Note from the ModelDB administrator: This below web page is a copy from the author's web site, http://mdcune.psych.ucla.edu/modules/swimmy, made on June 24th, 2009. Please see that site for proper style sheet version.


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SWIMMY

Free and complete software providing experience with neurophysiological phenomena and mechanisms of motor pattern generation in virtual neural circuits. Student manuals also provided.

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About SWIMMY

SWIMMY is an instructional tool for teaching neurophysiology that requires only a computer.  SWIMMY is a virtual fish that swims, moving its virtual tail by means of a virtual neural circuit.  SWIMMY offers students the opportunity to approach a conceptually challenging task of scientific discovery and to get practical experience with the basics of neurophysiology--without the impediments of in vivo or in vitro neurophysiology experiments.  SWIMMY is available for free, along with student and instructor tutorials.

Download SWIMMY Files

Students and Faculty can download the SWIMMY Program and SWIMMY Tutorials for free.

  1. Download the SWIMMY Program:  In order to download the SWIMMY Program ("SwimmyGUI"), you must first fill out the User Consent/Download Questionnaire (after which you will be directed to the download button).  Note that you will still be allowed to download SWIMMY even if you choose NOT to consent to anything.
  2. Take the Student Pre-Test:  If you are a student and are about to begin the SWIMMY module, please provide us with your level of scientific knowledge going into the module by taking ONE of the following Pre-Tests.  If your first name begins with A-J take the standard test, if your first name begins with K-Z take the alternate test.  First download the Questions (PDF) then input your answers into the Answer Form (electronic).
    • Standard Student Pre-Test (FIRST Name A-J) - Questions (PDF)
    • Standard Student Pre-Test (FIRST Name A-J) - Answer Form (electronic)
    • Alternate Student Pre-Test (FIRST Name K-Z) - Questions (PDF)
    • Alternate Student Pre-Test (FIRST Name K-Z) - Answer Form (electronic)
  3. Download the SWIMMY Tutorials:
  4. Take the Student Post-Test:  If you are a student and have completed the SWIMMY module, please provide us with your level of scientific knowledge coming out of the module by taking the following Post-Test (regardless of what Pre-Test you took, Option A or Option B, you will take the same Post-Test as everyone else).
  5. Fill out the Student Materials Evaluation:  If you are a student and have completed the SWIMMY module, please provide us with basic feedback on the materials used in this module by filling out the multiple choice Student Materials Evaluation

For Faculty

Faculty members interested in accessing faculty-related materials will need to obtain an account.  Please see the Faculty Web Page for more information.  Faculty members that already have an account may log in and go directly to the Faculty SWIMMY Web Page.

If you are a faculty member that has individually completed or taught the SWIMMY Module, please provide us with basic feedback on the materials used in this module by filling out the multiple choice Faculty Materials Evaluation.

Extras

  1. Read the published article (from the Journal of Undergraduate Neuroscience Education, Fall 2008, 7(1):A1-A8) about the SWIMMY teaching tool. 
  2. Watch a video that provides an overview about the SWIMMY teaching tool.

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License Information

Modular Digital Course in Undergraduate Neuroscience Education—Revised: SWIMMY by Franklin B. Krasne is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 United States License.

Based on a work at www.neuron.yale.edu.

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