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Ca2+ current versus Ca2+ channel cooperativity of exocytosis (Matveev et al. 2009)
Accession: 125676
"... While varying extracellular or intracellular Ca2+ concentration assesses the intrinsic biochemical Ca2+ cooperativity of neurotransmitter release, varying the number of open Ca2+ channels using pharmacological channel block or the tail current titration probes the cooperativity between individual Ca2+ channels in triggering exocytosis. ... Here we provide a detailed analysis of the Ca2+ sensitivity measures probed by these experimental protocols, present simple expressions for special cases, and demonstrate the distinction between the Ca2+ current cooperativity, defined by the relationship between exocytosis rate and the whole-terminal Ca2+ current magnitude, and the underlying Ca2+ channel cooperativity, defined as the average number of channels involved in the release of a single vesicle. ... Further, we use three-dimensional computational modeling of buffered Ca2+ diffusion to analyze these distinct Ca2+ cooperativity measures, and demonstrate the role of endogenous Ca2+ buffers on such measures. We show that buffers can either increase or decrease the Ca2+ current cooperativity of exocytosis, depending on their concentration and the single-channel Ca2+ current."
Reference: Matveev V, Bertram R, Sherman A (2009) Ca2+ current versus Ca2+ channel cooperativity of exocytosis. J Neurosci 29:12196-209 [PubMed]
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Model Information (Click on a link to find other models with that property)
Model Type:  Channel;
Brain Region(s)/Organism:  
Cell Type(s):   
Channel(s):   
Gap Junctions:  
Receptor(s):  
Gene(s):  
Transmitter(s):  
Simulation Environment:  CalC Calcium Calculator (web link to model);
Model Concept(s):  Calcium dynamics;
Implementer(s):  Matveev, Victor V. [m a t v e e v at n j i t . e d u ];
Model files (located externally to ModelDB) Help downloading and running models
Code for manuscript "Ca<sup>2+</sup> current vs. Ca<sup>2+</sup> channel cooperativity of exocytosis" (2009) Matveev Bertram Sherman
Model Code: Ca2+ current vs. Ca2+ channel cooperativity
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The scripts following below reproduce the simulation results presented in the manuscript:

Victor V. Matveev, Richard Bertram and Arthur Sherman (2009)
Ca2+ current vs. Ca2+ channel cooperativity of exocytosis
Journal of Neuroscience, 29(39): 12196-12209. [ Abstract ] [ Full Text ]


 Fig1.par This CalC script generates the first figure of the manuscript. It requires a single command-line parameters, the total buffer concentration (in μM) (e.g. run calc Fig1.par 100). The simulation produces an ASCII data file with five columns: (1) single-channel Ca2+ current (varied from 0.001 to 1 pA); (2) maximal release produced by a 1ms-long current pulse; (3) corresponding maximal [Ca2+] at release site, 30 nm from channel; (4) maximal volume-averaged [Ca2+]; (5) time to peak release after simulation start.

 Fig1.m A MATLAB m-file that generates Figure 1 using data produced by CalC script Fig1.par above.

 Fig7_8.par This CalC script generates data for Figures 7 and 8 of the manuscript. The simulation produces an ASCII data file used by MATLAB script Fig7_8.m below.

 Fig7_8.m A MATLAB m-file that generates Figures 7 and 8 using data produced by CalC script Fig7_8.par above.

 process2D.m A simple MATLAB data parsing script required by MATLAB m-files and Fig1.m and Fig7_8.m.



Supported in part by the National Science Foundation grant DMS 0817703 to Victor Matveev

Victor Matveev
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Last modified: January 8, 2010

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