ModelDB: Models that contain the Model Topic : Simplified Models

Models that contain the Model Topic : Simplified Models

(We define these to be ones where the 3D reconstruction of cells is replaced by one or a few compartments and/or biophysical currents are replaced by abstract ones.)

Models
A CORF computational model of a simple cell that relies on LGN input (Azzopardi & Petkov 2012))
A dynamical model of the basal ganglia (Leblois et al 2006)
A fast model of voltage-dependent NMDA Receptors (Moradi et al. 2012)
A finite volume method for stochastic integrate-and-fire models (Marpeau et al. 2009)
A model of the temporal pattern generator of C. elegans egg-laying behavior (Zhang et. al 2010)
A set of reduced models of layer 5 pyramidal neurons (Bahl et al. 2012)
A simplified cerebellar Purkinje neuron (the PPR model) (Brown et al. 2010)
A simplified model of NMDA oscillations in lamprey locomotor neurons (Huss et al. 2008)
A simulation method for the firing sequences of motor units (Jiang et al 2006)
A single column thalamocortical network model (Traub et al 2005)
A spiking model of cortical broadcast and competition (Shanahan 2008)
Accurate and fast simulation of channel noise in conductance-based model neurons (Linaro et al 2011)
Action potential-evoked Na+ influx are similar in axon and soma (Fleidervish et al. 2010)
Activity dependent changes in motoneurones (Dai Y et al 2002, Gardiner et al 2002)
An oscillatory neural model of multiple object tracking (Kazanovich and Borisyuk 2006)
Artificial neuron model (Izhikevich 2003)
Biologically-plausible models for spatial navigation (Cannon et al 2003)
Biophysical and phenomenological models of spike-timing dependent plasticity (Badoual et al. 2006)
CA1 Pyramidal Neuron: Synaptic Scaling (London, Segev 2001)
CA1 pyramidal neuron: depolarization block (Bianchi et al. 2012)
Ca(2+) oscillations based on Ca-induced Ca-release (Dupont et al 1991)
Ca1 pyramidal neuron: reduction model (Marasco et al. 2012)
Cat auditory nerve model (Zilany and Bruce 2006, 2007)
CellExcite: an efficient simulation environment for excitable cells (Bartocci et al. 2008)
Circadian clock model based on protein sequestration (simple version) (Kim & Forger 2012)
Cochlear implant models (Bruce et al. 1999a, b, c, 2000)
Coding of stimulus frequency by latency in thalamic networks (Golomb et al 2005)
Combination sensitivity and active conductances (Carlson and Kawasaki 2006)
Comparison of full and reduced globus pallidus models (Hendrickson 2010)
Competing oscillator 5-cell circuit and Parameterscape plotting (Gutierrez et al. 2013)
Competition model of pheromone ratio detection (Zavada et al. 2011)
Computational aspects of feedback in neural circuits (Maass et al 2006)
Computing with neural synchrony (Brette 2012)
Conditions of dominant effectiveness of distal dendrites (Korogod, Kulagina 1998)
Contibutions of input and history to motoneuron output (Powers et al 2005)
Dendritic signals command firing dynamics in a Cerebellar Purkinje Cell model (Genet et al. 2010)
Dendritic tip geometry effects electrical properties (Tsutsui, Oka 2001)
Dopamine-modulated medium spiny neuron, reduced model (Humphries et al. 2009)
Duration-tuned neurons from the inferior colliculus of the big brown bat (Aubie et al. 2009)
Duration-tuned neurons from the inferior colliculus of vertebrates (Aubie et al. 2012)
Dynamic dopamine modulation in the basal ganglia: Learning in Parkinson (Frank et al 2004,2005)
Dynamical model of olfactory bulb mitral cell (Rubin, Cleland 2006)
Dynamics of Spike Initiation (Prescott et al. 2008)
Effect of trp-like current on APs during exposure to sinusoidal voltage (Chen et al. 2010)
Effects of eugenol on the firing of action potentials in NG108-15 neurons (Huang et al. 2011)
Effects of synaptic location and timing on synaptic integration (Rall 1964)
Effects of the membrane AHP on the Lateral Superior Olive (LSO) (Zhou & Colburn 2010)
Fast oscillations in inhibitory networks (Maex, De Schutter 2003)
Feedforward heteroassociative network with HH dynamics (Lytton 1998)
Fixed point attractor (Hasselmo et al 1995)
Fluctuating synaptic conductances recreate in-vivo-like activity (Destexhe et al 2001)
Frog second-order vestibular neuron models (Rössert et al. 2011)
Functional consequences of cortical circuit abnormalities on gamma in schizophrenia (Spencer 2009)
GPi/GPe neuron models (Johnson and McIntyre 2008)
Gap-junction coupled network activity depends on coupled dendrites diameter (Gansert et al. 2007)
Generalized Carnevale-Hines algorithm (van Elburg and van Ooyen 2009)
Grid cell oscillatory interference with noisy network oscillators (Zilli and Hasselmo 2010)
High dimensional dynamics and low dimensional readouts in neural microcircuits (Haeusler et al 2006)
Hippocampal context-dependent retrieval (Hasselmo and Eichenbaum 2005)
Hippocampus temporo-septal engram shift model (Lytton 1999)
Hodgkin-Huxley models of different classes of cortical neurons (Pospischil et al. 2008)
Hodgkin-Huxley simplifed 2D and 3D models (Lundstrom et al. 2009)
Impact of dendritic size and topology on pyramidal cell burst firing (van Elburg and van Ooyen 2010)
Information-processing in lamina-specific cortical microcircuits (Haeusler and Maass 2006)
Inhibitory control by an integral feedback signal in prefrontal cortex (Miller and Wang 2006)
Input Fluctuations effects on f-I curves (Arsiero et al. 2007)
Integrate and fire model code for spike-based coincidence-detection (Heinz et al. 2001, others)
Ion concentration dynamics as a mechanism for neuronal bursting (Barreto & Cressman 2011)
Irregular oscillations produced by cyclic recurrent inhibition (Friesen, Friesen 1994)
Kinetic synaptic models applicable to building networks (Destexhe et al 1998)
LTP in cerebellar mossy fiber-granule cell synapses (Saftenku 2002)
Large cortex model with map-based neurons (Rulkov et al 2004)
Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Loss of phase-locking in non-weakly coupled inhib. networks of type-I neurons (Oh and Matveev 2009)
Low Threshold Calcium Currents in TC cells (Destexhe et al 1998)
Minimal cell model (Av-Ron et al 1991)
Model of calcium oscillations in olfactory cilia (Reidl et al. 2006)
Model of long range transmission of gamma oscillation (Murray 2007)
Modular grid cell responses as a basis for hippocampal remapping (Monaco and Abbott 2011)
Modulation of neuronal synchronization by D4 dopamine receptor-mediated phospholipid methylation
Modulation of temporal integration window (Migliore, Shepherd 2002)
Morris-Lecar model of the barnacle giant muscle fiber (Morris, Lecar 1981)
Motoneuron model of self-sustained firing after spinal cord injury (Kurian et al. 2011)
Motoneuron simulations for counting motor units (Major and Jones 2005)
Multimodal stimuli learning in hawkmoths (Balkenius et al. 2008)
Multiscale model of olfactory receptor neuron in mouse (Dougherty 2009)
Multistability of clustered states in a globally inhibitory network (Chandrasekaran et al. 2009)
Network model of the granular layer of the cerebellar cortex (Maex, De Schutter 1998)
Numerical Integration of Izhikevich and HH model neurons (Stewart and Bair 2009)
Olfactory Mitral Cell (Davison et al 2000)
Olfactory receptor neuron model (Dougherty et al 2005)
Parameter estimation for Hodgkin-Huxley based models of cortical neurons (Lepora et al. 2011)
Polychronization: Computation With Spikes (Izhikevich 2005)
Population models of temporal differentiation (Tripp and Eliasmith 2010)
Prediction for the presence of voltage-gated Ca2+ channels in myelinated central axons (Brown 2003)
Prefrontal cortical mechanisms for goal-directed behavior (Hasselmo 2005)
Presynaptic calcium dynamics at neuromuscular junction (Stockbridge, Moore 1984)
Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011)
Properties of aconitine-induced block of KDR current in NG108-15 neurons (Lin et al. 2008)
Pyramidal neurons switch from integrators to resonators (Prescott et al. 2008)
Reinforcement learning of targeted movement (Chadderdon et al. 2012)
Rejuvenation model of dopamine neuron (Chan et al. 2007)
Role of Ih in firing patterns of cold thermoreceptors (Orio et al., 2012)
Roles of subthalamic nucleus and DBS in reinforcement conflict-based decision making (Frank 2006)
STDP allows fast rate-modulated coding with Poisson-like spike trains (Gilson et al. 2011)
Salamander retinal ganglian cells: morphology influences firing (Sheasby, Fohlmeister 1999)
Self-influencing synaptic plasticity (Tamosiunaite et al. 2007)
Sensory feedback in an oscillatory interference model of place cell activity (Monaco et al. 2011)
Site of impulse initiation in a neuron (Moore et al 1983)
Sparsely connected networks of spiking neurons (Brunel 2000)
Spike Response Model simulator (Jolivet et al. 2004, 2006, 2008)
Spike trains in Hodgkin–Huxley model and ISIs of acupuncture manipulations (Wang et al. 2008)
Spinal Motor Neuron (Dodge, Cooley 1973)
Spontaneous calcium oscillations in astrocytes (Lavrentovich and Hemkin 2008)
Steady-state Vm distribution of neurons subject to synaptic noise (Rudolph, Destexhe 2005)
Synergistic inhibitory action of oxcarbazepine on INa and IK (Huang et al. 2008)
Systems-level modeling of neuronal circuits for leech swimming (Zheng et al. 2007)
Tag Trigger Consolidation (Clopath and Ziegler et al. 2008)
Thalamic reticular neurons: the role of Ca currents (Destexhe et al 1996)
The activity phase of postsynaptic neurons (Bose et al 2004)
Theta phase precession in a model CA3 place cell (Baker and Olds 2007)
Translating network models to parallel hardware in NEURON (Hines and Carnevale 2008)
Virtual Retina: biological retina simulator, with contrast gain control (Wohrer and Kornprobst 2009)

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