| 1 |
A Computational Model of Bidirectional Plasticity Regulation by betaCaMKII (Pinto et al. 2019) |
| 2 |
A dual-Ca2+-sensor model for neurotransmitter release in a central synapse (Sun et al. 2007) |
| 3 |
A kinetic model unifying presynaptic short-term facilitation and depression (Lee et al. 2009) |
| 4 |
A mathematical model of a neurovascular unit (Dormanns et al 2015, 2016) (Farrs & David 2011) |
| 5 |
A mathematical model of evoked calcium dynamics in astrocytes (Handy et al 2017) |
| 6 |
A model of neurovascular coupling and the BOLD response (Mathias et al 2017, Kenny et al 2018) |
| 7 |
A multiscale approach to analyze circadian rhythms (Vasalou & Henson, 2010) (CellML) |
| 8 |
A multiscale approach to analyze circadian rhythms (Vasalou & Henson, 2010) (SBML) |
| 9 |
A set of reduced models of layer 5 pyramidal neurons (Bahl et al. 2012) |
| 10 |
A simple integrative electrophysiological model of bursting GnRH neurons (Csercsik et al. 2011) |
| 11 |
A synapse model for developing somatosensory cortex (Manninen et al 2020) |
| 12 |
Action potential of mouse urinary bladder smooth muscle (Mahapatra et al 2018) |
| 13 |
Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018) |
| 14 |
Activity dependent changes in dendritic spine density and spine structure (Crook et al. 2007) |
| 15 |
Allen Institute: Gad2-IRES-Cre VISp layer 5 472447460 |
| 16 |
Allen Institute: Gad2-IRES-Cre VISp layer 5 473561729 |
| 17 |
Allen Institute: Htr3a-Cre VISp layer 2/3 472352327 |
| 18 |
Allen Institute: Htr3a-Cre VISp layer 2/3 472421285 |
| 19 |
Allen Institute: Nr5a1-Cre VISp layer 2/3 473862496 |
| 20 |
Allen Institute: Nr5a1-Cre VISp layer 4 329322394 |
| 21 |
Allen Institute: Nr5a1-Cre VISp layer 4 472306544 |
| 22 |
Allen Institute: Nr5a1-Cre VISp layer 4 472442377 |
| 23 |
Allen Institute: Nr5a1-Cre VISp layer 4 472451419 |
| 24 |
Allen Institute: Nr5a1-Cre VISp layer 4 472915634 |
| 25 |
Allen Institute: Nr5a1-Cre VISp layer 4 473834758 |
| 26 |
Allen Institute: Nr5a1-Cre VISp layer 4 473863035 |
| 27 |
Allen Institute: Nr5a1-Cre VISp layer 4 473871429 |
| 28 |
Allen Institute: Ntsr1-Cre VISp layer 4 472430904 |
| 29 |
Allen Institute: Pvalb-IRES-Cre VISp layer 2/3 472306616 |
| 30 |
Allen Institute: Pvalb-IRES-Cre VISp layer 5 471085845 |
| 31 |
Allen Institute: Pvalb-IRES-Cre VISp layer 5 472349114 |
| 32 |
Allen Institute: Pvalb-IRES-Cre VISp layer 5 472912177 |
| 33 |
Allen Institute: Pvalb-IRES-Cre VISp layer 5 473465774 |
| 34 |
Allen Institute: Pvalb-IRES-Cre VISp layer 5 473862421 |
| 35 |
Allen Institute: Pvalb-IRES-Cre VISp layer 6a 471081668 |
| 36 |
Allen Institute: Pvalb-IRES-Cre VISp layer 6a 472301074 |
| 37 |
Allen Institute: Pvalb-IRES-Cre VISp layer 6a 473860269 |
| 38 |
Allen Institute: Rbp4-Cre VISp layer 5 472424854 |
| 39 |
Allen Institute: Rbp4-Cre VISp layer 6a 473871592 |
| 40 |
Allen Institute: Rorb-IRES2-Cre-D VISp layer 2/3 472299294 |
| 41 |
Allen Institute: Rorb-IRES2-Cre-D VISp layer 2/3 472434498 |
| 42 |
Allen Institute: Rorb-IRES2-Cre-D VISp layer 4 473863510 |
| 43 |
Allen Institute: Rorb-IRES2-Cre-D VISp layer 5 471087975 |
| 44 |
Allen Institute: Rorb-IRES2-Cre-D VISp layer 5 473561660 |
| 45 |
Allen Institute: Scnn1a-Tg2-Cre VISp layer 4 472300877 |
| 46 |
Allen Institute: Scnn1a-Tg2-Cre VISp layer 4 472427533 |
| 47 |
Allen Institute: Scnn1a-Tg2-Cre VISp layer 4 472912107 |
| 48 |
Allen Institute: Scnn1a-Tg2-Cre VISp layer 4 473465456 |
| 49 |
Allen Institute: Scnn1a-Tg2-Cre VISp layer 5 472306460 |
| 50 |
Allen Institute: Scnn1a-Tg3-Cre VISp layer 4 329321704 |
| 51 |
Allen Institute: Scnn1a-Tg3-Cre VISp layer 4 472363762 |
| 52 |
Allen Institute: Scnn1a-Tg3-Cre VISp layer 4 473862845 |
| 53 |
Allen Institute: Scnn1a-Tg3-Cre VISp layer 4 473872986 |
| 54 |
Allen Institute: Scnn1a-Tg3-Cre VISp layer 5 472455509 |
| 55 |
Allen Institute: Scnn1a-Tg3-Cre VISp layer 5 473863578 |
| 56 |
Allen Institute: Scnn1a-Tg3-Cre VISp layer 5 473871773 |
| 57 |
Allen Institute: Sst-IRES-Cre VISp layer 2/3 471086533 |
| 58 |
Allen Institute: Sst-IRES-Cre VISp layer 2/3 472304676 |
| 59 |
Allen Institute: Sst-IRES-Cre VISp layer 4 472304539 |
| 60 |
Allen Institute: Sst-IRES-Cre VISp layer 5 472299363 |
| 61 |
Allen Institute: Sst-IRES-Cre VISp layer 5 472450023 |
| 62 |
Allen Institute: Sst-IRES-Cre VISp layer 5 473835796 |
| 63 |
Allen Institute: Sst-IRES-Cre VISp layer 6a 472440759 |
| 64 |
Astrocyte and Blood Vessel Calcium Imaging Tracking code (Haidey et al 2021) |
| 65 |
Ave. neuron model for slow-wave sleep in cortex Tatsuki 2016 Yoshida 2018 Rasmussen 2017 (all et al) |
| 66 |
BCM-like synaptic plasticity with conductance-based models (Narayanan Johnston, 2010) |
| 67 |
Behavioral time scale synaptic plasticity underlies CA1 place fields (Bittner et al. 2017) |
| 68 |
Biophysically detailed model of somatosensory thalamocortical circuit (Borges et al accepted) |
| 69 |
Biophysically detailed model of the mouse sino-atrial node cell (Kharche et al. 2011) |
| 70 |
BK - CaV coupling (Montefusco et al. 2017) |
| 71 |
Ca(2+) oscillations based on Ca-induced Ca-release (Dupont et al 1991) |
| 72 |
Ca+/HCN channel-dependent persistent activity in multiscale model of neocortex (Neymotin et al 2016) |
| 73 |
CA1 pyramidal neuron dendritic spine with plasticity (O`Donnell et al. 2011) |
| 74 |
CA1 pyramidal neuron: dendritic Ca2+ inhibition (Muellner et al. 2015) |
| 75 |
CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015) |
| 76 |
CA1 pyramidal: Stochastic amplification of KCa in Ca2+ microdomains (Stanley et al. 2011) |
| 77 |
Ca2+ current versus Ca2+ channel cooperativity of exocytosis (Matveev et al. 2009) |
| 78 |
Ca2+ oscillations in single astrocytes (Lavrentovich and Hemkin 2008) (python) (Manninen et al 2017) |
| 79 |
Ca2+ Oscillations in Sympathetic neurons (Friel 1995) |
| 80 |
Calcium dynamics depend on dendritic diameters (Anwar et al. 2014) |
| 81 |
Calcium influx during striatal upstates (Evans et al. 2013) |
| 82 |
Calcium response prediction in the striatal spines depending on input timing (Nakano et al. 2013) |
| 83 |
Calcium spikes in basal dendrites (Kampa and Stuart 2006) |
| 84 |
Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013) |
| 85 |
Calcium waves in neuroblastoma cells (Fink et al. 2000) |
| 86 |
Cardiac Atrial Cell (Courtemanche et al 1998) |
| 87 |
Cardiac sarcomere dynamics (Negroni and Lascano 1996) |
| 88 |
Cerebellar Golgi cells, dendritic processing, and synaptic plasticity (Masoli et al 2020) |
| 89 |
Cerebellar granule cell (Masoli et al 2020) |
| 90 |
Cerebellar purkinje cell: interacting Kv3 and Na currents influence firing (Akemann, Knopfel 2006) |
| 91 |
Cerebellar purkinje cell: K and Ca channels regulate APs (Miyasho et al 2001) |
| 92 |
Cerebellum Purkinje cell: dendritic ion channels activated by climbing fibre (Ait Ouares et al 2019) |
| 93 |
Coincident signals in Olfactory Bulb Granule Cell spines (Aghvami et al 2019) |
| 94 |
Computational model of bladder small DRG neuron soma (Mandge & Manchanda 2018) |
| 95 |
Computer model of clonazepam's effect in thalamic slice (Lytton 1997) |
| 96 |
Computer simulations of neuron-glia interactions mediated by ion flux (Somjen et al. 2008) |
| 97 |
Conductance based model for short term plasticity at CA3-CA1 synapses (Mukunda & Narayanan 2017) |
| 98 |
Controlling KCa channels with different Ca2+ buffering models in Purkinje cell (Anwar et al. 2012) |
| 99 |
Dendritic signals command firing dynamics in a Cerebellar Purkinje Cell model (Genet et al. 2010) |
| 100 |
Dendritic spine geometry, spine apparatus organization: spatiotemporal Ca dynamics (Bell et al 2019) |
| 101 |
Dentate granule cell: mAHP & sAHP; SK & Kv7/M channels (Mateos-Aparicio et al., 2014) |
| 102 |
Dentate gyrus granule cell: calcium and calcium-dependent conductances (Aradi and Holmes 1999) |
| 103 |
Depolarization Enhacement of Dendritic Spike Propagation (Bock et al 2022) |
| 104 |
Determinants of fast calcium dynamics in dendritic spines and dendrites (Cornelisse et al. 2007) |
| 105 |
Deterministic chaos in a mathematical model of a snail neuron (Komendantov and Kononenko 1996) |
| 106 |
Differential modulation of pattern and rate in a dopamine neuron model (Canavier and Landry 2006) |
| 107 |
Discrimination on behavioral time-scales mediated by reaction-diffusion in dendrites (Bhalla 2017) |
| 108 |
Disentangling astroglial physiology with a realistic cell model in silico (Savtchenko et al 2018) |
| 109 |
Endocannabinoid dynamics gate spike-timing dependent depression and potentiation (Cui et al 2016) |
| 110 |
ERG current in repolarizing plateau potentials in dopamine neurons (Canavier et al 2007) |
| 111 |
Excitability of PFC Basal Dendrites (Acker and Antic 2009) |
| 112 |
Excitation-contraction coupling/mitochondrial energetics (ECME) model (Cortassa et al. 2006) |
| 113 |
Facilitation model based on bound Ca2+ (Matveev et al. 2006) |
| 114 |
Facilitation through buffer saturation (Matveev et al. 2004) |
| 115 |
Glutamate mediated dendritic and somatic plateau potentials in cortical L5 pyr cells (Gao et al '20) |
| 116 |
Glutamate-evoked Ca2+ oscillations in single astrocytes (De Pitta et al. 2009) (Manninen et al 2017) |
| 117 |
Glutamate-evoked Ca2+ oscillations in single astrocytes (Modified from Dupont et al. 2011) |
| 118 |
Intrinsic sensory neurons of the gut (Chambers et al. 2014) |
| 119 |
Ionic current model of a Hypoglossal Motoneuron (Purvis & Butera 2005) |
| 120 |
Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006) |
| 121 |
Lobster STG pyloric network model with calcium sensor (Gunay & Prinz 2010) (Prinz et al. 2004) |
| 122 |
Locus Coeruleus blocking model (Chowdhury et al. accepted) |
| 123 |
Low Threshold Calcium Currents in TC cells (Destexhe et al 1998) |
| 124 |
Low Threshold Calcium Currents in TC cells (Destexhe et al 1998) (Brian) |
| 125 |
Mechanisms of fast rhythmic bursting in a layer 2/3 cortical neuron (Traub et al 2003) |
| 126 |
Medial vestibular neuron models (Quadroni and Knopfel 1994) |
| 127 |
Model for K-ATP mediated bursting in mSNc DA neurons (Knowlton et al 2018) |
| 128 |
Model for pancreatic beta-cells (Law et al. 2020) |
| 129 |
Model of AngII signaling and membrane electrophysiology (Makadia, Anderson, Fey et al., 2015) |
| 130 |
Model of calcium oscillations in olfactory cilia (Reidl et al. 2006) |
| 131 |
Model of eupnea and sigh generation in respiratory network (Toporikova et al 2015) |
| 132 |
Modelling platform of the cochlear nucleus and other auditory circuits (Manis & Compagnola 2018) |
| 133 |
Multiple dynamical modes of thalamic relay neurons (Wang XJ 1994) |
| 134 |
Multiscale model of excitotoxicity in PD (Muddapu and Chakravarthy 2020) |
| 135 |
Multiscale simulation of the striatal medium spiny neuron (Mattioni & Le Novere 2013) |
| 136 |
Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016) |
| 137 |
MyFirstNEURON (Houweling, Sejnowski 1997) |
| 138 |
Neocortical pyramidal neuron: deep; effects of dopamine (Durstewitz et al 2000) |
| 139 |
Neural mass model of spindle generation in the isolated thalamus (Schellenberger Costa et al. 2016) |
| 140 |
Neural mass model of the sleeping thalamocortical system (Schellenberger Costa et al 2016) |
| 141 |
New and corrected simulations of synaptic facilitation (Matveev et al. 2002) |
| 142 |
NMDA subunit effects on Calcium and STDP (Evans et al. 2012) |
| 143 |
Nodose sensory neuron (Schild et al. 1994, Schild and Kunze 1997) |
| 144 |
Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012) |
| 145 |
Olfactory bulb mitral cell gap junction NN model: burst firing and synchrony (O`Connor et al. 2012) |
| 146 |
Olfactory Bulb mitral-granule network generates beta oscillations (Osinski & Kay 2016) |
| 147 |
Opposing roles for Na+/Ca2+ exchange and Ca2+-activated K+ currents during STDP (O`Halloran 2020) |
| 148 |
Paired turbulence and light effect on calcium increase in Hermissenda (Blackwell 2004) |
| 149 |
Pancreatic Beta Cell signalling pathways (Fridlyand & Philipson 2016) (MATLAB) |
| 150 |
Paradoxical GABA-mediated excitation (Lewin et al. 2012) |
| 151 |
Parallel STEPS: Large scale stochastic spatial reaction-diffusion simulat. (Chen & De Schutter 2017) |
| 152 |
Persistent Spiking in ACC Neurons (Ratte et al 2018) |
| 153 |
Phase plane reveals two slow variables in midbrain dopamine neuron bursts (Yu and Canavier, 2015) |
| 154 |
Presynaptic calcium dynamics at neuromuscular junction (Stockbridge, Moore 1984) |
| 155 |
Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) |
| 156 |
Pyramidal neuron conductances state and STDP (Delgado et al. 2010) |
| 157 |
Pyramidal Neuron: Deep, Thalamic Relay and Reticular, Interneuron (Destexhe et al 1998, 2001) |
| 158 |
Quantal neurotransmitter release kinetics with fixed and mobile Ca2+ buffers (Gilmanov et al. 2008) |
| 159 |
Rat LGN Thalamocortical Neuron (Connelly et al 2015, 2016) |
| 160 |
Realistic barrel cortical column - Matlab (Huang et al., 2022) |
| 161 |
Realistic barrel cortical column - NetPyNE (Huang et al., 2022) |
| 162 |
Reciprocal regulation of rod and cone synapse by NO (Kourennyi et al 2004) |
| 163 |
Reproducibility and comparability of models for astrocyte Ca2+ excitability (Manninen et al 2017) |
| 164 |
Ribbon Synapse (Sikora et al 2005) |
| 165 |
Rod photoreceptor (Barnes and Hille 1989, Publio et al. 2006, Kourennyi and Liu et al. 2004) |
| 166 |
Salamander retinal ganglian cells: morphology influences firing (Sheasby, Fohlmeister 1999) |
| 167 |
Salamander retinal ganglion cell: ion channels (Fohlmeister, Miller 1997) |
| 168 |
Simulated light response in rod photoreceptors (Liu and Kourennyi 2004) |
| 169 |
Simulation of calcium signaling in fine astrocytic processes (Denizot et al 2019) |
| 170 |
Single-cell comprehensive biophysical model of SN pars compacta (Muddapu & Chakravarthy 2021) |
| 171 |
Species-specific wiring for direction selectivity in the mammalian retina (Ding et al 2016) |
| 172 |
Spike timing detection in different forms of LTD (Doi et al 2005) |
| 173 |
Spine neck plasticity controls postsynaptic calcium signals (Grunditz et al. 2008) |
| 174 |
Spiny Projection Neuron Ca2+ based plasticity is robust to in vivo spike train (Dorman&Blackwell) |
| 175 |
Spontaneous calcium oscillations in astrocytes (Lavrentovich and Hemkin 2008) |
| 176 |
Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017) |
| 177 |
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013) |
| 178 |
STDP depends on dendritic synapse location (Letzkus et al. 2006) |
| 179 |
Stochastic automata network Markov model descriptors of coupled Ca2+ channels (Nguyen et al. 2005) |
| 180 |
Stochastic calcium mechanisms cause dendritic calcium spike variability (Anwar et al. 2013) |
| 181 |
Stochastic model of the olfactory cilium transduction and adaptation (Antunes et al 2014) |
| 182 |
Striatal Spiny Projection Neuron (SPN) plasticity rule (Jedrzejewska-Szmek et al 2016) |
| 183 |
Striatal Spiny Projection Neuron, inhibition enhances spatial specificity (Dorman et al 2018) |
| 184 |
Striatum D1 Striosome and Matrix Upstates (Prager et al., 2020) |
| 185 |
Syn Plasticity Regulation + Information Processing in Neuron-Astrocyte Networks (Vuillaume et al 21) |
| 186 |
Synaptic integration in a model of granule cells (Gabbiani et al 1994) |
| 187 |
Temporal decorrelation by intrinsic cellular dynamics (Wang et al 2003) |
| 188 |
Thalamic quiescence of spike and wave seizures (Lytton et al 1997) |
| 189 |
Thalamic Reticular Network (Destexhe et al 1994) |
| 190 |
Thalamic reticular neurons: the role of Ca currents (Destexhe et al 1996) |
| 191 |
Thalamocortical and Thalamic Reticular Network (Destexhe et al 1996) |
| 192 |
The electrodiffusive neuron-extracellular-glia (edNEG) model (Sætra et al. 2021) |
| 193 |
Theta phase precession in a model CA3 place cell (Baker and Olds 2007) |
| 194 |
Tonic activation of extrasynaptic NMDA-R promotes bistability (Gall & Dupont 2020) |
| 195 |
Tonic neuron in spinal lamina I: prolongation of subthreshold depol. (Prescott and De Koninck 2005) |
| 196 |
Transmitter release and Ca diffusion models (Yamada and Zucker 1992) |
| 197 |
Two forms of synaptic depression by neuromodulation of presynaptic Ca2+ channels (Burke et al 2018) |
| 198 |
Ventricular cell model (Luo Rudy dynamic model) (Luo Rudy 1994) used in (Wang et al 2006) (XPP) |
