1 |
2D model of olfactory bulb gamma oscillations (Li and Cleland 2017) |
2 |
3D model of the olfactory bulb (Migliore et al. 2014) |
3 |
3D olfactory bulb: operators (Migliore et al, 2015) |
4 |
A 1000 cell network model for Lateral Amygdala (Kim et al. 2013) |
5 |
A computational approach/model to explore NMDA receptors functions (Keller et al 2017) |
6 |
A dendritic disinhibitory circuit mechanism for pathway-specific gating (Yang et al. 2016) |
7 |
A detailed data-driven network model of prefrontal cortex (Hass et al 2016) |
8 |
A fast model of voltage-dependent NMDA Receptors (Moradi et al. 2013) |
9 |
A mathematical model of a neurovascular unit (Dormanns et al 2015, 2016) (Farrs & David 2011) |
10 |
A model of unitary responses from A/C and PP synapses in CA3 pyramidal cells (Baker et al. 2010) |
11 |
A multilayer cortical model to study seizure propagation across microdomains (Basu et al. 2015) |
12 |
A multiscale approach to analyze circadian rhythms (Vasalou & Henson, 2010) (CellML) |
13 |
A multiscale approach to analyze circadian rhythms (Vasalou & Henson, 2010) (SBML) |
14 |
A simplified model of NMDA oscillations in lamprey locomotor neurons (Huss et al. 2008) |
15 |
A single column thalamocortical network model (Traub et al 2005) |
16 |
A spatial model of the intermediate superior colliculus (Moren et. al. 2013) |
17 |
A synapse model for developing somatosensory cortex (Manninen et al 2020) |
18 |
A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013) |
19 |
A unified thalamic model of multiple distinct oscillations (Li, Henriquez and Fröhlich 2017) |
20 |
Acetylcholine Boosts Dendritic NMDA Spikes in a CA3 Pyramidal Neuron Model (Humphries et al., 2021) |
21 |
Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018) |
22 |
Active dendritic integration in robust and precise grid cell firing (Schmidt-Hieber et al 2017) |
23 |
Afferent Integration in the NAcb MSP Cell (Wolf et al. 2005) |
24 |
An allosteric kinetics of NMDARs in STDP (Urakubo et al. 2008) |
25 |
An attractor network model of grid cells and theta-nested gamma oscillations (Pastoll et al 2013) |
26 |
AP back-prop. explains threshold variability and rapid rise (McCormick et al. 2007, Yu et al. 2008) |
27 |
Application of a common kinetic formalism for synaptic models (Destexhe et al 1994) |
28 |
Ave. neuron model for slow-wave sleep in cortex Tatsuki 2016 Yoshida 2018 Rasmussen 2017 (all et al) |
29 |
BCM-like synaptic plasticity with conductance-based models (Narayanan Johnston, 2010) |
30 |
Biologically Constrained Basal Ganglia model (BCBG model) (Lienard, Girard 2014) |
31 |
Biophysical and phenomenological models of spike-timing dependent plasticity (Badoual et al. 2006) |
32 |
Biophysically realistic neural modeling of the MEG mu rhythm (Jones et al. 2009) |
33 |
Bursting in dopamine neurons (Li YX et al 1996) |
34 |
Ca+/HCN channel-dependent persistent activity in multiscale model of neocortex (Neymotin et al 2016) |
35 |
CA1 network model for place cell dynamics (Turi et al 2019) |
36 |
CA1 network model: interneuron contributions to epileptic deficits (Shuman et al 2019) |
37 |
CA1 pyr cell: Inhibitory modulation of spatial selectivity+phase precession (Grienberger et al 2017) |
38 |
CA1 pyramidal cell receptor dependent cAMP dynamics (Chay et al. 2016) |
39 |
CA1 pyramidal neuron dendritic spine with plasticity (O`Donnell et al. 2011) |
40 |
CA1 pyramidal neuron synaptic integration (Bloss et al. 2016) |
41 |
CA1 pyramidal neuron synaptic integration (Li and Ascoli 2006, 2008) |
42 |
CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) |
43 |
CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015) |
44 |
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004) |
45 |
CA1 pyramidal neuron: depolarization block (Bianchi et al. 2012) |
46 |
CA1 pyramidal neuron: nonlinear a5-GABAAR controls synaptic NMDAR activation (Schulz et al 2018) |
47 |
CA1 pyramidal neuron: Persistent Na current mediates steep synaptic amplification (Hsu et al 2018) |
48 |
CA1 pyramidal neuron: synaptically-induced bAP predicts synapse location (Sterratt et al. 2012) |
49 |
CA1 stratum radiatum interneuron multicompartmental model (Katona et al. 2011) |
50 |
CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015) |
51 |
Calcium influx during striatal upstates (Evans et al. 2013) |
52 |
Calcium response prediction in the striatal spines depending on input timing (Nakano et al. 2013) |
53 |
Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013) |
54 |
Central Nervous System tadpole model in Matlab and NEURON-Python (Ferrario et al, accepted) |
55 |
Cerebellar cortex oscil. robustness from Golgi cell gap jncs (Simoes de Souza and De Schutter 2011) |
56 |
Cerebellar granular layer (Maex and De Schutter 1998) |
57 |
Cerebellar granule cell (Masoli et al 2020) |
58 |
Cerebellar Model for the Optokinetic Response (Kim and Lim 2021) |
59 |
Cerebellar nuclear neuron (Sudhakar et al., 2015) |
60 |
Cerebellar Nucleus Neuron (Steuber, Schultheiss, Silver, De Schutter & Jaeger, 2010) |
61 |
Cerebellum granule cell FHF (Dover et al. 2016) |
62 |
Circadian rhythmicity shapes astrocyte morphology and neuronal function in CA1 (McCauley et al 2020) |
63 |
Coincident glutamatergic depolarization effects on Cl- dynamics (Lombardi et al, 2021) |
64 |
Coincident signals in Olfactory Bulb Granule Cell spines (Aghvami et al 2019) |
65 |
Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017) |
66 |
Comparison of full and reduced globus pallidus models (Hendrickson 2010) |
67 |
Composite spiking network/neural field model of Parkinsons (Kerr et al 2013) |
68 |
Comprehensive models of human cortical pyramidal neurons (Eyal et al 2018) |
69 |
Computational analysis of NN activity and spatial reach of sharp wave-ripples (Canakci et al 2017) |
70 |
Computer simulations of neuron-glia interactions mediated by ion flux (Somjen et al. 2008) |
71 |
Conditions of dominant effectiveness of distal dendrites (Korogod, Kulagina 1998) |
72 |
Cortex-Basal Ganglia-Thalamus network model (Kumaravelu et al. 2016) |
73 |
Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015) |
74 |
Cortical network model of posttraumatic epileptogenesis (Bush et al 1999) |
75 |
Current Dipole in Laminar Neocortex (Lee et al. 2013) |
76 |
Deconstruction of cortical evoked potentials generated by subthalamic DBS (Kumaravelu et al 2018) |
77 |
Dendrites enable a robust mechanism for neuronal stimulus selectivity (Caze et al 2017) |
78 |
Dendritic action potentials and computation in human layer 2/3 cortical neurons (Gidon et al 2020) |
79 |
Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010) |
80 |
Dendritic spine geometry, spine apparatus organization: spatiotemporal Ca dynamics (Bell et al 2019) |
81 |
Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009) |
82 |
Dentate Gyrus model including Granule cells with dendritic compartments (Chavlis et al 2017) |
83 |
DG adult-born granule cell: nonlinear a5-GABAARs control AP firing (Lodge et al, accepted) |
84 |
Differential modulation of pattern and rate in a dopamine neuron model (Canavier and Landry 2006) |
85 |
Discrimination on behavioral time-scales mediated by reaction-diffusion in dendrites (Bhalla 2017) |
86 |
Distal inhibitory control of sensory-evoked excitation (Egger, Schmitt et al. 2015) |
87 |
Distance-dependent synaptic strength in CA1 pyramidal neurons (Menon et al. 2013) |
88 |
Distinct integration properties of noisy inputs in active dendritic subunits (Poleg-Polsky 2019) |
89 |
Distributed working memory in large-scale macaque brain model (Mejias and Wang, accepted) |
90 |
Dopamine-modulated medium spiny neuron, reduced model (Humphries et al. 2009) |
91 |
Dopaminergic cell bursting model (Kuznetsov et al 2006) |
92 |
Duration-tuned neurons from the inferior colliculus of vertebrates (Aubie et al. 2012) |
93 |
Dynamic cortical interlaminar interactions (Carracedo et al. 2013) |
94 |
Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014) |
95 |
Effects of KIR current inactivation in NAc Medium Spiny Neurons (Steephen and Manchanda 2009) |
96 |
Effects of neural morphology on global and focal NMDA-spikes (Poleg-Polsky 2015) |
97 |
Effects of spinal cord stimulation on WDR dorsal horn network (Zhang et al 2014) |
98 |
Efficient simulation environment for modeling large-scale cortical processing (Richert et al. 2011) |
99 |
Electrostimulation to reduce synaptic scaling driven progression of Alzheimers (Rowan et al. 2014) |
100 |
Emergence of physiological oscillation frequencies in neocortex simulations (Neymotin et al. 2011) |
101 |
Emergent properties of networks of biological signaling pathways (Bhalla, Iyengar 1999) |
102 |
Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009) |
103 |
Endocannabinoid dynamics gate spike-timing dependent depression and potentiation (Cui et al 2016) |
104 |
Excitability of DA neurons and their regulation by synaptic input (Morozova et al. 2016a, 2016b) |
105 |
Excitatory synaptic interactions in pyramidal neuron dendrites (Behabadi et al. 2012) |
106 |
Excitotoxic loss of dopaminergic cells in PD (Muddapu et al 2019) |
107 |
Functional consequences of cortical circuit abnormalities on gamma in schizophrenia (Spencer 2009) |
108 |
Gamma genesis in the basolateral amygdala (Feng et al 2019) |
109 |
Gating of steering signals through phasic modulation of reticulospinal neurons (Kozlov et al. 2014) |
110 |
Global and multiplexed dendritic computations under in vivo-like conditions (Ujfalussy et al 2018) |
111 |
Glutamate mediated dendritic and somatic plateau potentials in cortical L5 pyr cells (Gao et al '20) |
112 |
Granule Cells of the Olfactory Bulb (Simoes_De_Souza et al. 2014) |
113 |
Heterosynaptic Spike-Timing-Dependent Plasticity (Hiratani & Fukai 2017) |
114 |
Hierarchical network model of perceptual decision making (Wimmer et al 2015) |
115 |
High frequency oscillations in a hippocampal computational model (Stacey et al. 2009) |
116 |
Hippocampal CA3 thorny and a-thorny principal neuron models (Linaro et al in review) |
117 |
Hotspots of dendritic spine turnover facilitates new spines and NN sparsity (Frank et al 2018) |
118 |
Human tactile FA1 neurons (Hay and Pruszynski 2020) |
119 |
Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013) |
120 |
In silico hippocampal modeling for multi-target pharmacotherapy in schizophrenia (Sherif et al 2020) |
121 |
In vivo imaging of dentate gyrus mossy cells in behaving mice (Danielson et al 2017) |
122 |
Interacting synaptic conductances during, distorting, voltage clamp (Poleg-Polsky and Diamond 2011) |
123 |
Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007) |
124 |
Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006) |
125 |
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011) |
126 |
Kinetic NMDA receptor model (Kampa et al 2004) |
127 |
Kinetic synaptic models applicable to building networks (Destexhe et al 1998) |
128 |
KV1 channel governs cerebellar output to thalamus (Ovsepian et al. 2013) |
129 |
L5 PFC microcircuit used to study persistent activity (Papoutsi et al. 2014, 2013) |
130 |
L5 PFC pyramidal neurons (Papoutsi et al. 2017) |
131 |
Large scale model of the olfactory bulb (Yu et al., 2013) |
132 |
Large scale neocortical model for PGENESIS (Crone et al 2019) |
133 |
Layer V PFC pyramidal neuron used to study persistent activity (Sidiropoulou & Poirazi 2012) |
134 |
Layer V pyramidal cell functions and schizophrenia genetics (Mäki-Marttunen et al 2019) |
135 |
Leaky Integrate and Fire Neuron Model of Context Integration (Calvin, Redish accepted) |
136 |
Learning intrinsic excitability in Medium Spiny Neurons (Scheler 2014) |
137 |
Levodopa-Induced Toxicity in Parkinson's Disease (Muddapu et al, 2022) |
138 |
Linear vs non-linear integration in CA1 oblique dendrites (Gómez González et al. 2011) |
139 |
Locus Coeruleus blocking model (Chowdhury et al. accepted) |
140 |
Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015) |
141 |
Long-Term Inactivation of Na+ Channels as a Mech of Adaptation in CA1 Pyr Cells (Upchurch et al '22) |
142 |
Look-Up Table Synapse (LUTsyn) models for AMPA and NMDA (Pham et al., 2021) |
143 |
LTP in cerebellar mossy fiber-granule cell synapses (Saftenku 2002) |
144 |
Mathematical model for windup (Aguiar et al. 2010) |
145 |
Maximal firing rate in midbrain dopamine neurons (Knowlton et al., accepted) |
146 |
MEC layer II stellate cell: Synaptic mechanisms of grid cells (Schmidt-Hieber & Hausser 2013) |
147 |
Mechanisms underlying subunit independence in pyramidal neuron dendrites (Behabadi and Mel 2014) |
148 |
Medial vestibular neuron models (Quadroni and Knopfel 1994) |
149 |
MEG of Somatosensory Neocortex (Jones et al. 2007) |
150 |
Microcircuits of L5 thick tufted pyramidal cells (Hay & Segev 2015) |
151 |
Midbrain dopamine neuron: firing patterns (Canavier 1999) |
152 |
Mirror Neuron (Antunes et al 2017) |
153 |
Model for K-ATP mediated bursting in mSNc DA neurons (Knowlton et al 2018) |
154 |
Model of the cerebellar granular network (Sudhakar et al 2017) |
155 |
Model of the Xenopus tadpole swimming spinal network (Roberts et al. 2014) |
156 |
Modelling platform of the cochlear nucleus and other auditory circuits (Manis & Compagnola 2018) |
157 |
Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014) |
158 |
Motor system model with reinforcement learning drives virtual arm (Dura-Bernal et al 2017) |
159 |
Multiplication by NMDA receptors in Direction Selective Ganglion cells (Poleg-Polsky & Diamond 2016) |
160 |
Multiscale interactions between chemical and electric signaling in LTP (Bhalla 2011) |
161 |
Multiscale model of excitotoxicity in PD (Muddapu and Chakravarthy 2020) |
162 |
MyFirstNEURON (Houweling, Sejnowski 1997) |
163 |
Network bursts in cultured NN result from different adaptive mechanisms (Masquelier & Deco 2013) |
164 |
Network model of the granular layer of the cerebellar cortex (Maex, De Schutter 1998) |
165 |
Network recruitment to coherent oscillations in a hippocampal model (Stacey et al. 2011) |
166 |
Neural mass model of spindle generation in the isolated thalamus (Schellenberger Costa et al. 2016) |
167 |
Neural mass model of the sleeping thalamocortical system (Schellenberger Costa et al 2016) |
168 |
Nigral dopaminergic neurons: effects of ethanol on Ih (Migliore et al. 2008) |
169 |
NMDA receptor saturation (Chen et al 2001) |
170 |
NMDA receptors enhance the fidelity of synaptic integration (Li and Gulledge 2021) |
171 |
NMDA spikes in basal dendrites of L5 pyramidal neurons (Polsky et al. 2009) |
172 |
NMDAR & GABAB/KIR Give Bistable Dendrites: Working Memory & Sequence Readout (Sanders et al., 2013) |
173 |
Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012) |
174 |
Normal ripples, abnormal ripples, and fast ripples in a hippocampal model (Fink et al. 2015) |
175 |
Olfactory bulb granule cell: effects of odor deprivation (Saghatelyan et al 2005) |
176 |
Olfactory bulb microcircuits model with dual-layer inhibition (Gilra & Bhalla 2015) |
177 |
Olfactory bulb mitral and granule cell column formation (Migliore et al. 2007) |
178 |
Olfactory bulb mitral and granule cell: dendrodendritic microcircuits (Migliore and Shepherd 2008) |
179 |
Olfactory Bulb mitral-granule network generates beta oscillations (Osinski & Kay 2016) |
180 |
Olfactory Bulb Network (Davison et al 2003) |
181 |
Olfactory Computations in Mitral-Granule cell circuits (Migliore & McTavish 2013) |
182 |
Orientation preference in L23 V1 pyramidal neurons (Park et al 2019) |
183 |
Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018) |
184 |
Parametric computation and persistent gamma in a cortical model (Chambers et al. 2012) |
185 |
Persistent synchronized bursting activity in cortical tissues (Golomb et al 2005) |
186 |
Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012) |
187 |
Pyramidal neuron conductances state and STDP (Delgado et al. 2010) |
188 |
Pyramidal neuron, fast, regular, and irregular spiking interneurons (Konstantoudaki et al 2014) |
189 |
Rat LGN Thalamocortical Neuron (Connelly et al 2015, 2016) |
190 |
Reconstructing cerebellar granule layer evoked LFP using convolution (ReConv) (Diwakar et al. 2011) |
191 |
Regulation of the firing pattern in dopamine neurons (Komendantov et al 2004) |
192 |
Reinforcement learning of targeted movement (Chadderdon et al. 2012) |
193 |
Ribbon Synapse (Sikora et al 2005) |
194 |
Robust transmission in the inhibitory Purkinje Cell to Cerebellar Nuclei pathway (Abbasi et al 2017) |
195 |
Roles of essential kinases in induction of late hippocampal LTP (Smolen et al., 2006) |
196 |
SCZ-associated variant effects on L5 pyr cell NN activity and delta osc. (Maki-Marttunen et al 2018) |
197 |
Self-influencing synaptic plasticity (Tamosiunaite et al. 2007) |
198 |
Sensorimotor cortex reinforcement learning of 2-joint virtual arm reaching (Neymotin et al. 2013) |
199 |
Sensory-evoked responses of L5 pyramidal tract neurons (Egger et al 2020) |
200 |
Shaping NMDA spikes by timed synaptic inhibition on L5PC (Doron et al. 2017) |
201 |
Short Term Depression, Presynaptic Inhib., Neuron Diversity Roles in Antennal Lobe (Wei & Lo 2020) |
202 |
Short term plasticity at the cerebellar granule cell (Nieus et al. 2006) |
203 |
Single compartment Dorsal Lateral Medium Spiny Neuron w/ NMDA and AMPA (Biddell and Johnson 2013) |
204 |
Single compartment: nonlinear a5-GABAAR controls synaptic NMDAR activation (Schulz et al 2018) |
205 |
Single-cell comprehensive biophysical model of SN pars compacta (Muddapu & Chakravarthy 2021) |
206 |
Sleep-wake transitions in corticothalamic system (Bazhenov et al 2002) |
207 |
Spatial coupling tunes NMDA receptor responses via Ca2+ diffusion (Iacobucci and Popescu 2019) |
208 |
Spatial summation of excitatory and inhibitory inputs in pyramidal neurons (Hao et al. 2010) |
209 |
Specific inhibition of dendritic plateau potential in striatal projection neurons (Du et al 2017) |
210 |
Spiking GridPlaceMap model (Pilly & Grossberg, PLoS One, 2013) |
211 |
Spine fusion and branching affects synaptic response (Rusakov et al 1996, 1997) |
212 |
Spine neck plasticity controls postsynaptic calcium signals (Grunditz et al. 2008) |
213 |
STDP and BDNF in CA1 spines (Solinas et al. 2019) |
214 |
STDP and NMDAR Subunits (Gerkin et al. 2007) |
215 |
STDP depends on dendritic synapse location (Letzkus et al. 2006) |
216 |
Striatal D1R medium spiny neuron, including a subcellular DA cascade (Lindroos et al 2018) |
217 |
Striatal GABAergic microcircuit, dopamine-modulated cell assemblies (Humphries et al. 2009) |
218 |
Striatal GABAergic microcircuit, spatial scales of dynamics (Humphries et al, 2010) |
219 |
Striatal Spiny Projection Neuron (SPN) plasticity rule (Jedrzejewska-Szmek et al 2016) |
220 |
Striatal Spiny Projection Neuron, inhibition enhances spatial specificity (Dorman et al 2018) |
221 |
Striatum D1 Striosome and Matrix Upstates (Prager et al., 2020) |
222 |
Structure-dynamics relationships in bursting neuronal networks revealed (Mäki-Marttunen et al. 2013) |
223 |
Subiculum network model with dynamic chloride/potassium homeostasis (Buchin et al 2016) |
224 |
Syn Plasticity Regulation + Information Processing in Neuron-Astrocyte Networks (Vuillaume et al 21) |
225 |
Synaptic information transfer in computer models of neocortical columns (Neymotin et al. 2010) |
226 |
Synaptic integration in a model of granule cells (Gabbiani et al 1994) |
227 |
Synaptic integration in tuft dendrites of layer 5 pyramidal neurons (Larkum et al. 2009) |
228 |
Synaptic scaling balances learning in a spiking model of neocortex (Rowan & Neymotin 2013) |
229 |
Synaptic vesicle fusion model (Church et al 2021) |
230 |
Synchronicity of fast-spiking interneurons balances medium-spiny neurons (Damodaran et al. 2014) |
231 |
Synchrony by synapse location (McTavish et al. 2012) |
232 |
Thalamic network model of deep brain stimulation in essential tremor (Birdno et al. 2012) |
233 |
The APP in C-terminal domain alters CA1 neuron firing (Pousinha et al 2019) |
234 |
The origin of different spike and wave-like events (Hall et al 2017) |
235 |
Theta phase precession in a model CA3 place cell (Baker and Olds 2007) |
236 |
Tonic activation of extrasynaptic NMDA-R promotes bistability (Gall & Dupont 2020) |
237 |
Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006) |
238 |
Unbalanced peptidergic inhibition in superficial cortex underlies seizure activity (Hall et al 2015) |
239 |
Visual Cortex Neurons: Dendritic study (Anderson et al 1999) |
240 |
VTA dopamine neuron (Tarfa, Evans, and Khaliq 2017) |