SenseLab

Computational model (s) having NMDA as Model Receptors


 
Name
1 2D model of olfactory bulb gamma oscillations (Li and Cleland 2017)
2 3D model of the olfactory bulb (Migliore et al. 2014)
3 3D olfactory bulb: operators (Migliore et al, 2015)
4 A 1000 cell network model for Lateral Amygdala (Kim et al. 2013)
5 A computational approach/model to explore NMDA receptors functions (Keller et al 2017)
6 A dendritic disinhibitory circuit mechanism for pathway-specific gating (Yang et al. 2016)
7 A detailed data-driven network model of prefrontal cortex (Hass et al 2016)
8 A fast model of voltage-dependent NMDA Receptors (Moradi et al. 2013)
9 A mathematical model of a neurovascular unit (Dormanns et al 2015, 2016) (Farrs & David 2011)
10 A model of unitary responses from A/C and PP synapses in CA3 pyramidal cells (Baker et al. 2010)
11 A multilayer cortical model to study seizure propagation across microdomains (Basu et al. 2015)
12 A multiscale approach to analyze circadian rhythms (Vasalou & Henson, 2010) (CellML)
13 A multiscale approach to analyze circadian rhythms (Vasalou & Henson, 2010) (SBML)
14 A simplified model of NMDA oscillations in lamprey locomotor neurons (Huss et al. 2008)
15 A single column thalamocortical network model (Traub et al 2005)
16 A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
17 A synapse model for developing somatosensory cortex (Manninen et al 2020)
18 A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013)
19 A unified thalamic model of multiple distinct oscillations (Li, Henriquez and Fröhlich 2017)
20 Acetylcholine Boosts Dendritic NMDA Spikes in a CA3 Pyramidal Neuron Model (Humphries et al., 2021)
21 Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018)
22 Active dendritic integration in robust and precise grid cell firing (Schmidt-Hieber et al 2017)
23 Afferent Integration in the NAcb MSP Cell (Wolf et al. 2005)
24 An allosteric kinetics of NMDARs in STDP (Urakubo et al. 2008)
25 An attractor network model of grid cells and theta-nested gamma oscillations (Pastoll et al 2013)
26 AP back-prop. explains threshold variability and rapid rise (McCormick et al. 2007, Yu et al. 2008)
27 Application of a common kinetic formalism for synaptic models (Destexhe et al 1994)
28 Ave. neuron model for slow-wave sleep in cortex Tatsuki 2016 Yoshida 2018 Rasmussen 2017 (all et al)
29 BCM-like synaptic plasticity with conductance-based models (Narayanan Johnston, 2010)
30 Biologically Constrained Basal Ganglia model (BCBG model) (Lienard, Girard 2014)
31 Biophysical and phenomenological models of spike-timing dependent plasticity (Badoual et al. 2006)
32 Biophysically realistic neural modeling of the MEG mu rhythm (Jones et al. 2009)
33 Bursting in dopamine neurons (Li YX et al 1996)
34 Ca+/HCN channel-dependent persistent activity in multiscale model of neocortex (Neymotin et al 2016)
35 CA1 network model for place cell dynamics (Turi et al 2019)
36 CA1 network model: interneuron contributions to epileptic deficits (Shuman et al 2019)
37 CA1 pyr cell: Inhibitory modulation of spatial selectivity+phase precession (Grienberger et al 2017)
38 CA1 pyramidal cell receptor dependent cAMP dynamics (Chay et al. 2016)
39 CA1 pyramidal neuron dendritic spine with plasticity (O`Donnell et al. 2011)
40 CA1 pyramidal neuron synaptic integration (Bloss et al. 2016)
41 CA1 pyramidal neuron synaptic integration (Li and Ascoli 2006, 2008)
42 CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003)
43 CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015)
44 CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
45 CA1 pyramidal neuron: depolarization block (Bianchi et al. 2012)
46 CA1 pyramidal neuron: nonlinear a5-GABAAR controls synaptic NMDAR activation (Schulz et al 2018)
47 CA1 pyramidal neuron: Persistent Na current mediates steep synaptic amplification (Hsu et al 2018)
48 CA1 pyramidal neuron: synaptically-induced bAP predicts synapse location (Sterratt et al. 2012)
49 CA1 stratum radiatum interneuron multicompartmental model (Katona et al. 2011)
50 CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
51 Calcium influx during striatal upstates (Evans et al. 2013)
52 Calcium response prediction in the striatal spines depending on input timing (Nakano et al. 2013)
53 Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013)
54 Central Nervous System tadpole model in Matlab and NEURON-Python (Ferrario et al, accepted)
55 Cerebellar cortex oscil. robustness from Golgi cell gap jncs (Simoes de Souza and De Schutter 2011)
56 Cerebellar granular layer (Maex and De Schutter 1998)
57 Cerebellar granule cell (Masoli et al 2020)
58 Cerebellar Model for the Optokinetic Response (Kim and Lim 2021)
59 Cerebellar nuclear neuron (Sudhakar et al., 2015)
60 Cerebellar Nucleus Neuron (Steuber, Schultheiss, Silver, De Schutter & Jaeger, 2010)
61 Cerebellum granule cell FHF (Dover et al. 2016)
62 Circadian rhythmicity shapes astrocyte morphology and neuronal function in CA1 (McCauley et al 2020)
63 Coincident glutamatergic depolarization effects on Cl- dynamics (Lombardi et al, 2021)
64 Coincident signals in Olfactory Bulb Granule Cell spines (Aghvami et al 2019)
65 Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017)
66 Comparison of full and reduced globus pallidus models (Hendrickson 2010)
67 Composite spiking network/neural field model of Parkinsons (Kerr et al 2013)
68 Comprehensive models of human cortical pyramidal neurons (Eyal et al 2018)
69 Computational analysis of NN activity and spatial reach of sharp wave-ripples (Canakci et al 2017)
70 Computer simulations of neuron-glia interactions mediated by ion flux (Somjen et al. 2008)
71 Conditions of dominant effectiveness of distal dendrites (Korogod, Kulagina 1998)
72 Cortex-Basal Ganglia-Thalamus network model (Kumaravelu et al. 2016)
73 Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015)
74 Cortical network model of posttraumatic epileptogenesis (Bush et al 1999)
75 Current Dipole in Laminar Neocortex (Lee et al. 2013)
76 Deconstruction of cortical evoked potentials generated by subthalamic DBS (Kumaravelu et al 2018)
77 Dendrites enable a robust mechanism for neuronal stimulus selectivity (Caze et al 2017)
78 Dendritic action potentials and computation in human layer 2/3 cortical neurons (Gidon et al 2020)
79 Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010)
80 Dendritic spine geometry, spine apparatus organization: spatiotemporal Ca dynamics (Bell et al 2019)
81 Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009)
82 Dentate Gyrus model including Granule cells with dendritic compartments (Chavlis et al 2017)
83 DG adult-born granule cell: nonlinear a5-GABAARs control AP firing (Lodge et al, accepted)
84 Differential modulation of pattern and rate in a dopamine neuron model (Canavier and Landry 2006)
85 Discrimination on behavioral time-scales mediated by reaction-diffusion in dendrites (Bhalla 2017)
86 Distal inhibitory control of sensory-evoked excitation (Egger, Schmitt et al. 2015)
87 Distance-dependent synaptic strength in CA1 pyramidal neurons (Menon et al. 2013)
88 Distinct integration properties of noisy inputs in active dendritic subunits (Poleg-Polsky 2019)
89 Distributed working memory in large-scale macaque brain model (Mejias and Wang, accepted)
90 Dopamine-modulated medium spiny neuron, reduced model (Humphries et al. 2009)
91 Dopaminergic cell bursting model (Kuznetsov et al 2006)
92 Duration-tuned neurons from the inferior colliculus of vertebrates (Aubie et al. 2012)
93 Dynamic cortical interlaminar interactions (Carracedo et al. 2013)
94 Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
95 Effects of KIR current inactivation in NAc Medium Spiny Neurons (Steephen and Manchanda 2009)
96 Effects of neural morphology on global and focal NMDA-spikes (Poleg-Polsky 2015)
97 Effects of spinal cord stimulation on WDR dorsal horn network (Zhang et al 2014)
98 Efficient simulation environment for modeling large-scale cortical processing (Richert et al. 2011)
99 Electrostimulation to reduce synaptic scaling driven progression of Alzheimers (Rowan et al. 2014)
100 Emergence of physiological oscillation frequencies in neocortex simulations (Neymotin et al. 2011)
101 Emergent properties of networks of biological signaling pathways (Bhalla, Iyengar 1999)
102 Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
103 Endocannabinoid dynamics gate spike-timing dependent depression and potentiation (Cui et al 2016)
104 Excitability of DA neurons and their regulation by synaptic input (Morozova et al. 2016a, 2016b)
105 Excitatory synaptic interactions in pyramidal neuron dendrites (Behabadi et al. 2012)
106 Excitotoxic loss of dopaminergic cells in PD (Muddapu et al 2019)
107 Functional consequences of cortical circuit abnormalities on gamma in schizophrenia (Spencer 2009)
108 Gamma genesis in the basolateral amygdala (Feng et al 2019)
109 Gating of steering signals through phasic modulation of reticulospinal neurons (Kozlov et al. 2014)
110 Global and multiplexed dendritic computations under in vivo-like conditions (Ujfalussy et al 2018)
111 Glutamate mediated dendritic and somatic plateau potentials in cortical L5 pyr cells (Gao et al '20)
112 Granule Cells of the Olfactory Bulb (Simoes_De_Souza et al. 2014)
113 Heterosynaptic Spike-Timing-Dependent Plasticity (Hiratani & Fukai 2017)
114 Hierarchical network model of perceptual decision making (Wimmer et al 2015)
115 High frequency oscillations in a hippocampal computational model (Stacey et al. 2009)
116 Hippocampal CA3 thorny and a-thorny principal neuron models (Linaro et al in review)
117 Hotspots of dendritic spine turnover facilitates new spines and NN sparsity (Frank et al 2018)
118 Human tactile FA1 neurons (Hay and Pruszynski 2020)
119 Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
120 In silico hippocampal modeling for multi-target pharmacotherapy in schizophrenia (Sherif et al 2020)
121 In vivo imaging of dentate gyrus mossy cells in behaving mice (Danielson et al 2017)
122 Interacting synaptic conductances during, distorting, voltage clamp (Poleg-Polsky and Diamond 2011)
123 Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007)
124 Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006)
125 Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
126 Kinetic NMDA receptor model (Kampa et al 2004)
127 Kinetic synaptic models applicable to building networks (Destexhe et al 1998)
128 KV1 channel governs cerebellar output to thalamus (Ovsepian et al. 2013)
129 L5 PFC microcircuit used to study persistent activity (Papoutsi et al. 2014, 2013)
130 L5 PFC pyramidal neurons (Papoutsi et al. 2017)
131 Large scale model of the olfactory bulb (Yu et al., 2013)
132 Large scale neocortical model for PGENESIS (Crone et al 2019)
133 Layer V PFC pyramidal neuron used to study persistent activity (Sidiropoulou & Poirazi 2012)
134 Layer V pyramidal cell functions and schizophrenia genetics (Mäki-Marttunen et al 2019)
135 Leaky Integrate and Fire Neuron Model of Context Integration (Calvin, Redish accepted)
136 Learning intrinsic excitability in Medium Spiny Neurons (Scheler 2014)
137 Levodopa-Induced Toxicity in Parkinson's Disease (Muddapu et al, 2022)
138 Linear vs non-linear integration in CA1 oblique dendrites (Gómez González et al. 2011)
139 Locus Coeruleus blocking model (Chowdhury et al. accepted)
140 Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
141 Long-Term Inactivation of Na+ Channels as a Mech of Adaptation in CA1 Pyr Cells (Upchurch et al '22)
142 Look-Up Table Synapse (LUTsyn) models for AMPA and NMDA (Pham et al., 2021)
143 LTP in cerebellar mossy fiber-granule cell synapses (Saftenku 2002)
144 Mathematical model for windup (Aguiar et al. 2010)
145 Maximal firing rate in midbrain dopamine neurons (Knowlton et al., accepted)
146 MEC layer II stellate cell: Synaptic mechanisms of grid cells (Schmidt-Hieber & Hausser 2013)
147 Mechanisms underlying subunit independence in pyramidal neuron dendrites (Behabadi and Mel 2014)
148 Medial vestibular neuron models (Quadroni and Knopfel 1994)
149 MEG of Somatosensory Neocortex (Jones et al. 2007)
150 Microcircuits of L5 thick tufted pyramidal cells (Hay & Segev 2015)
151 Midbrain dopamine neuron: firing patterns (Canavier 1999)
152 Mirror Neuron (Antunes et al 2017)
153 Model for K-ATP mediated bursting in mSNc DA neurons (Knowlton et al 2018)
154 Model of the cerebellar granular network (Sudhakar et al 2017)
155 Model of the Xenopus tadpole swimming spinal network (Roberts et al. 2014)
156 Modelling platform of the cochlear nucleus and other auditory circuits (Manis & Compagnola 2018)
157 Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014)
158 Motor system model with reinforcement learning drives virtual arm (Dura-Bernal et al 2017)
159 Multiplication by NMDA receptors in Direction Selective Ganglion cells (Poleg-Polsky & Diamond 2016)
160 Multiscale interactions between chemical and electric signaling in LTP (Bhalla 2011)
161 Multiscale model of excitotoxicity in PD (Muddapu and Chakravarthy 2020)
162 MyFirstNEURON (Houweling, Sejnowski 1997)
163 Network bursts in cultured NN result from different adaptive mechanisms (Masquelier & Deco 2013)
164 Network model of the granular layer of the cerebellar cortex (Maex, De Schutter 1998)
165 Network recruitment to coherent oscillations in a hippocampal model (Stacey et al. 2011)
166 Neural mass model of spindle generation in the isolated thalamus (Schellenberger Costa et al. 2016)
167 Neural mass model of the sleeping thalamocortical system (Schellenberger Costa et al 2016)
168 Nigral dopaminergic neurons: effects of ethanol on Ih (Migliore et al. 2008)
169 NMDA receptor saturation (Chen et al 2001)
170 NMDA receptors enhance the fidelity of synaptic integration (Li and Gulledge 2021)
171 NMDA spikes in basal dendrites of L5 pyramidal neurons (Polsky et al. 2009)
172 NMDAR & GABAB/KIR Give Bistable Dendrites: Working Memory & Sequence Readout (Sanders et al., 2013)
173 Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012)
174 Normal ripples, abnormal ripples, and fast ripples in a hippocampal model (Fink et al. 2015)
175 Olfactory bulb granule cell: effects of odor deprivation (Saghatelyan et al 2005)
176 Olfactory bulb microcircuits model with dual-layer inhibition (Gilra & Bhalla 2015)
177 Olfactory bulb mitral and granule cell column formation (Migliore et al. 2007)
178 Olfactory bulb mitral and granule cell: dendrodendritic microcircuits (Migliore and Shepherd 2008)
179 Olfactory Bulb mitral-granule network generates beta oscillations (Osinski & Kay 2016)
180 Olfactory Bulb Network (Davison et al 2003)
181 Olfactory Computations in Mitral-Granule cell circuits (Migliore & McTavish 2013)
182 Orientation preference in L23 V1 pyramidal neurons (Park et al 2019)
183 Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
184 Parametric computation and persistent gamma in a cortical model (Chambers et al. 2012)
185 Persistent synchronized bursting activity in cortical tissues (Golomb et al 2005)
186 Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012)
187 Pyramidal neuron conductances state and STDP (Delgado et al. 2010)
188 Pyramidal neuron, fast, regular, and irregular spiking interneurons (Konstantoudaki et al 2014)
189 Rat LGN Thalamocortical Neuron (Connelly et al 2015, 2016)
190 Reconstructing cerebellar granule layer evoked LFP using convolution (ReConv) (Diwakar et al. 2011)
191 Regulation of the firing pattern in dopamine neurons (Komendantov et al 2004)
192 Reinforcement learning of targeted movement (Chadderdon et al. 2012)
193 Ribbon Synapse (Sikora et al 2005)
194 Robust transmission in the inhibitory Purkinje Cell to Cerebellar Nuclei pathway (Abbasi et al 2017)
195 Roles of essential kinases in induction of late hippocampal LTP (Smolen et al., 2006)
196 SCZ-associated variant effects on L5 pyr cell NN activity and delta osc. (Maki-Marttunen et al 2018)
197 Self-influencing synaptic plasticity (Tamosiunaite et al. 2007)
198 Sensorimotor cortex reinforcement learning of 2-joint virtual arm reaching (Neymotin et al. 2013)
199 Sensory-evoked responses of L5 pyramidal tract neurons (Egger et al 2020)
200 Shaping NMDA spikes by timed synaptic inhibition on L5PC (Doron et al. 2017)
201 Short Term Depression, Presynaptic Inhib., Neuron Diversity Roles in Antennal Lobe (Wei & Lo 2020)
202 Short term plasticity at the cerebellar granule cell (Nieus et al. 2006)
203 Single compartment Dorsal Lateral Medium Spiny Neuron w/ NMDA and AMPA (Biddell and Johnson 2013)
204 Single compartment: nonlinear a5-GABAAR controls synaptic NMDAR activation (Schulz et al 2018)
205 Single-cell comprehensive biophysical model of SN pars compacta (Muddapu & Chakravarthy 2021)
206 Sleep-wake transitions in corticothalamic system (Bazhenov et al 2002)
207 Spatial coupling tunes NMDA receptor responses via Ca2+ diffusion (Iacobucci and Popescu 2019)
208 Spatial summation of excitatory and inhibitory inputs in pyramidal neurons (Hao et al. 2010)
209 Specific inhibition of dendritic plateau potential in striatal projection neurons (Du et al 2017)
210 Spiking GridPlaceMap model (Pilly & Grossberg, PLoS One, 2013)
211 Spine fusion and branching affects synaptic response (Rusakov et al 1996, 1997)
212 Spine neck plasticity controls postsynaptic calcium signals (Grunditz et al. 2008)
213 STDP and BDNF in CA1 spines (Solinas et al. 2019)
214 STDP and NMDAR Subunits (Gerkin et al. 2007)
215 STDP depends on dendritic synapse location (Letzkus et al. 2006)
216 Striatal D1R medium spiny neuron, including a subcellular DA cascade (Lindroos et al 2018)
217 Striatal GABAergic microcircuit, dopamine-modulated cell assemblies (Humphries et al. 2009)
218 Striatal GABAergic microcircuit, spatial scales of dynamics (Humphries et al, 2010)
219 Striatal Spiny Projection Neuron (SPN) plasticity rule (Jedrzejewska-Szmek et al 2016)
220 Striatal Spiny Projection Neuron, inhibition enhances spatial specificity (Dorman et al 2018)
221 Striatum D1 Striosome and Matrix Upstates (Prager et al., 2020)
222 Structure-dynamics relationships in bursting neuronal networks revealed (Mäki-Marttunen et al. 2013)
223 Subiculum network model with dynamic chloride/potassium homeostasis (Buchin et al 2016)
224 Syn Plasticity Regulation + Information Processing in Neuron-Astrocyte Networks (Vuillaume et al 21)
225 Synaptic information transfer in computer models of neocortical columns (Neymotin et al. 2010)
226 Synaptic integration in a model of granule cells (Gabbiani et al 1994)
227 Synaptic integration in tuft dendrites of layer 5 pyramidal neurons (Larkum et al. 2009)
228 Synaptic scaling balances learning in a spiking model of neocortex (Rowan & Neymotin 2013)
229 Synaptic vesicle fusion model (Church et al 2021)
230 Synchronicity of fast-spiking interneurons balances medium-spiny neurons (Damodaran et al. 2014)
231 Synchrony by synapse location (McTavish et al. 2012)
232 Thalamic network model of deep brain stimulation in essential tremor (Birdno et al. 2012)
233 The APP in C-terminal domain alters CA1 neuron firing (Pousinha et al 2019)
234 The origin of different spike and wave-like events (Hall et al 2017)
235 Theta phase precession in a model CA3 place cell (Baker and Olds 2007)
236 Tonic activation of extrasynaptic NMDA-R promotes bistability (Gall & Dupont 2020)
237 Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006)
238 Unbalanced peptidergic inhibition in superficial cortex underlies seizure activity (Hall et al 2015)
239 Visual Cortex Neurons: Dendritic study (Anderson et al 1999)
240 VTA dopamine neuron (Tarfa, Evans, and Khaliq 2017)