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Data
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Evaluation of stochastic diff. eq. approximation of ion channel gating models (Bruce 2009)
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Fox and Lu derived an algorithm based on stochastic differential equations for approximating the kinetics of ion channel gating that is simpler and faster than "exact" algorithms for simulating Markov process models of channel gating.
However, the approximation may not be sufficiently accurate to predict statistics of action potential generation in some cases.
The objective of this study was to develop a framework for analyzing the inaccuracies and determining their origin.
Simulations of a patch of membrane with voltage-gated sodium and potassium channels were performed using an exact algorithm for the kinetics of channel gating and the approximate algorithm of Fox & Lu.
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The results indicate that: (i) the source of the inaccuracy is that the Fox & Lu algorithm does not adequately describe the combined behavior of the multiple activation particles in each sodium and potassium channel, and (ii) the accuracy does not improve with increasing numbers of channels.
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