Paper

Data

Name Magalhães BRC, Sterling T, Hines M, Schürmann F (2019)

Description

Title Asynchronous Branch-Parallel Simulation of Detailed Neuron Models.

References Hines ML, Carnevale NT (1997) Show Other Hines M (1984) Show Other HODGKIN AL, HUXLEY AF (1952) Show Other Carnevale NT, Rosenthal S (1992) Show Other Hines ML, Markram H, Schürmann F (2008) Show Other Korf RE (1998) Show Other Gewaltig M-O, Diesmann M (2007) Show Other Goodman DF, Brette R (2009) Show Other Brette R, Goodman DF (2011) Show Other Kozloski J, Wagner J (2011) Show Other Hines M, Kumar S, Schürmann F (2011) Show Other Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Bé JV, Magalhães BR, Merchán-Pérez A, Meystre J, Morrice BR, Muller J, Muñoz-Céspedes A, Muralidhar S, Muthurasa K, Nachbaur D, Newton TH, Nolte M, Ovcharenko A, Palacios J, Pastor L, Perin R, Ranjan R, Riachi I, Rodríguez JR, Riquelme JL, Rössert C, Sfyrakis K, Shi Y, Shillcock JC, Silberberg G, Silva R, Tauheed F, Telefont M, Toledo-Rodriguez M, Tränkler T, Van Geit W, Díaz JV, Walker R, Wang Y, Zaninetta SM (2015) Show Other Zenke F, Gerstner W (2014) Show Other Kumbhar P,Hines M,Ovcharenko A,Mallon DA,King J,Sainz F,et al (2016) Show Other Kandel ER, Markram H, Matthews PM, Yuste R, Koch C (2013) Show Other Kumbhar P, Hines M, Fouriaux J, Ovcharenko A, King J, Delalondre F, Schürmann F (2019) Show Other Kumar S, Heidelberger P, Chen D, Hines M (2010) Show Other Markram H, Gerstner W, Sjöström PJ (2012) Show Other

Authors Hines M Show Other Schürmann F Show Other Sterling T Show Other Magalhães BRC Show Other

Volume 13

First page 54

Last page

Publisher

Pubmed ID 31396069

Year published 2019

Month published

Day published

Journal or book name Front Neuroinform

Book Editor(s)

Missing References Blue Brain Project (2015). Coreneuron—Simulator Optimized for Large Scale Neural Network Simulations. Available online at: https://github.com/bluebrain/CoreNeuron <| [No Pubmed ID Found] |> Chindemi, G. (2018). Towards a Unified Understanding of Synaptic Plasticity Parsimonious Modeling and Simulation of the Glutamatergic Synapse Life-Cycle. Lausanne: EPFL. doi: 10.5075/epfl-thesis-8186 <| [No Pubmed ID Found] |> Duran, A., Ayguadé, E., Badia, R. M., Labarta, J., Martinell, L., Martorell, X., et al. (2011). Ompss: a proposal for programming heterogeneous multi-core architectures. Parallel Process. Lett. 21, 173–193. doi: 10.1142/S0129626411000151 <| [No Pubmed ID Found] |> Kaiser, H., Brodowicz, M., and Sterling, T. (2009). “Parallex an advanced parallel execution model for scaling-impaired applications,” in International Conference on Parallel Processing Workshops, 2009. ICPPW'09 (Vienna: IEEE), 394–401. <| [No Pubmed ID Found] |> Kale, L. V., Krishnan, S., Wilson, G. V., and Lu, P. (1996). “Parallel Programming using C++,” in Charm++: Parallel Programming with Message-Driven Objects (MIT Press), 175–213. <| [No Pubmed ID Found] |> Kissel, E., and Swany, M. (2016). “Photon: remote memory access middleware for high-performance runtime systems,” in IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (Chicago, IL: IEEE), 1736–1743. <| [No Pubmed ID Found] |> Klijn, W., Cumming, B., Yates, S., Karakasis, V., and Peyser, A. (2017). “Arbor: A morphologically detailed neural network simulator for modern high performance computer architectures,” in 26th Computational Neuroscience Meeting (Antwerp). <| [No Pubmed ID Found] |> Kulkarni, A., Dalessandro, L., Kissel, E., Lumsdaine, A., Sterling, T., and Swany, M. (2016). “Network-managed virtual global address space for message-driven runtimes,” in Proceedings of the 25th ACM International Symposium on High-Performance Parallel and Distributed Computing (Kyoto: ACM), 15–18. <| [No Pubmed ID Found] |> Magalhães, B. R. C., Tauheed, F., Heinis, T., Ailamaki, A., and Schürmann, F. (2016). “An efficient parallel load-balancing framework for orthogonal decomposition of geometrical data,” in International Conference on High Performance Computing (Frankfurt: Springer), 81–97. <| [No Pubmed ID Found] |> Magalhães, Bruno RC and Blue Brain Project (2017). Neurox: A Parallel and Distributed Asynchronous Simulator of Extended Hodgkin-Huxley Neuron Models. Available online at: https://github.com/bluebrain/neurox <| [No Pubmed ID Found] |> Niebur, E. (2008). Neuronal cable theory. Scholarpedia 3:2674. doi: 10.4249/scholarpedia.2674 <| MULTIPLE Pubmed IDs Found] |> Sodani, A. (2015). “Knights landing (KNL): 2nd generation Intel Xeon Phi processor,” in IEEE Hot Chips 27 Symposium (HCS) (Cupertino, CA: IEEE), 1–24. <| [No Pubmed ID Found] |> Sterling, T., Anderson, M., Bohan, P. K., Brodowicz, M., Kulkarni, A., and Zhang, B. (2014). “Towards exascale co-design in a runtime system,” in Exascale Applications and Software Conference (Stockholm). <| [No Pubmed ID Found] |> Vooturi, D. T., Kothapalli, K., and Bhalla, U. S. (2017). “Parallelizing Hines matrix solver in neuron simulations on GPU,” in IEEE 24th International Conference on High Performance Computing (HiPC) (Genoa: IEEE), 388–397. <| [No Pubmed ID Found] |> Walker, D. W., and Dongarra, J. J. (1996). MPI: a standard message passing interface. Supercomputer 12, 56–68. <| [No Pubmed ID Found] |>

Type

Digital Object Identifier 10.3389/fninf.2019.00054

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Stated Usage

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