MicrocircuitDB: Models sorted by First Author

Models sorted by First Author

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No.	Reference	Model
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1	Abdellah M, Hernando J, Antille N, Eilemann S, Markram H, Schürmann F (2017) [PubMed]	The neocortical microcircuit collaboration portal (Markram et al. 2015)
2	Adams W, Graham JN, Han X, Riecke H (2018) [PubMed]	Neurogenesis in the olfactory bulb controlled by top-down input (Adams et al 2018)
3	Anderson WS, Azhar F, Kudela P, Bergey GK, Franaszczuk PJ (2012) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
4	Anderson WS, Kudela P, Cho J, Bergey GK, Franaszczuk PJ (2007) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
5	Anderson WS, Kudela P, Cho J, Bergey GK, Franaszczuk PJ (2007) [PubMed]	Studies of stimulus parameters for seizure disruption using NN simulations (Anderson et al. 2007)
6	Anderson WS, Kudela P, Weinberg S, Bergey GK, Franaszczuk PJ (2009) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
7	Argaman T, Golomb D (2017) [PubMed]	Conductance-based model of Layer-4 in the barrel cortex (Argaman et Golomb 2017)
8	Aubie B, Becker S, Faure PA (2009) [PubMed]	Duration-tuned neurons from the inferior colliculus of the big brown bat (Aubie et al. 2009)
9	Aubie B, Sayegh R, Faure PA (2012) [PubMed]	Duration-tuned neurons from the inferior colliculus of vertebrates (Aubie et al. 2012)
10	Ausborn J, Snyder AC, Shevtsova NA, Rybak IA, Rubin JE (2017) [PubMed]	State-dependent rhythmogenesis in a half-center locomotor CPG (Ausburn et al 2017)
11	Ausborn J, Stein W, Wolf H (2007) [PubMed]	Interaction of leak and IMI conductance on the STG over broad temperature range (Stadele et al 2015)
12	Avella Gonzalez OJ, Mansvelder HD, van Pelt J, van Ooyen A (2015) [PubMed]	H-currents effect on the fluctuation of gamma/beta oscillations (Avella-Gonzalez et al., 2015)
13	Avella Gonzalez OJ, Van Aerde KI, Mansvelder HD, Van Pelt J, Van Ooyen A (2014) [PubMed]	A two networks model of connectivity-dependent oscillatory activity (Avella OJ et al. 2014)
14	Avella Gonzalez OJ, van Aerde KI, van Elburg RA, Poil SS, Mansvelder HD, Linkenkaer-Hansen K, (2012) [PubMed]	Single E-I oscillating network with amplitude modulation (Avella Gonzalez et al. 2012)
15	Azhar F, Anderson WS (2012) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
16	Bahmer A, Langner G (2006) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
17	Bahmer A, Langner G (2006) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
18	Bahmer A, Langner G (2007) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
19	Bahmer A, Langner G (2009) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
20	Bahmer A, Langner G (2009) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
21	Bartos M, Vida I, Frotscher M, Meyer A, Monyer H, Geiger JR, Jonas P (2002) [PubMed]	Gamma oscillations in hippocampal interneuron networks (Bartos et al 2002)
22	Basu I, Kudela P, Anderson WS (2014) [PubMed]	A multilayer cortical model to study seizure propagation across microdomains (Basu et al. 2015)
23	Basu I, Kudela P, Korzeniewska A, Franaszczuk PJ, Anderson WS (2015) [PubMed]	A multilayer cortical model to study seizure propagation across microdomains (Basu et al. 2015)
24	Bathellier B, Lagier S, Faure P, Lledo PM (2006) [PubMed]	Olfactory bulb network model of gamma oscillations (Bathellier et al. 2006; Lagier et al. 2007)
25	Bathellier B, Lagier S, Faure P, Lledo PM (2006) [PubMed]	Olfactory bulb network model of gamma oscillations (Bathellier et al. 2006; Lagier et al. 2007)
26	Baxter DA, Byrne JH (2007) [PubMed]	Homosynaptic plasticity in the tail withdrawal circuit (TWC) of Aplysia (Baxter and Byrne 2006)
27	Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (1998) [PubMed]	Thalamocortical augmenting response (Bazhenov et al 1998)
28	Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (2002) [PubMed]	Sleep-wake transitions in corticothalamic system (Bazhenov et al 2002)
29	Beeman D (2013) [PubMed]	Auditory cortex layer IV network model (Beeman 2013)
30	Behuret S, Deleuze C, Gomez L, Fregnac Y and Bal T (2013) [PubMed]	A Model Circuit of Thalamocortical Convergence (Behuret et al. 2013)
31	beim Graben P, Rodrigues S (2013) [PubMed]	Biophysical model for field potentials of networks of I&F neurons (beim Graben & Serafim 2013)
32	Berzhanskaya J, Chernyy N, Gluckman BJ, Schiff SJ, Ascoli GA (2013) [PubMed]	Modulation of hippocampal rhythms by electric fields and network topology (Berzhanskaya et al. 2013)
33	Beverlin B, Kakalios J, Nykamp D, Netoff TI (2011) [PubMed]	Epileptic seizure model with Morris-Lecar neurons (Beverlin and Netoff 2011)
34	Bezaire M, Raikov I, Burk K, Armstrong C, Soltesz I (2016) [PubMed]	Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016)
35	Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I (2016) [PubMed]	Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016)
36	Bianchi D, De Michele P, Marchetti C, Tirozzi B, Cuomo S, Marie H, Migliore M (2014) [PubMed]	Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
37	Bogaard A, Parent J, Zochowski M, Booth V (2009) [PubMed]	Small world networks of Type I and Type II Excitable Neurons (Bogaard et al. 2009)
38	Bol K, Marsat G, Harvey-Girard E, Longtin A, Maler L (2011) [PubMed]	Cancelling redundant input in ELL pyramidal cells (Bol et al. 2011)
39	Bono J, Clopath C (2017) [PubMed]	Modeling dendritic spikes and plasticity (Bono and Clopath 2017)
40	Bose A, Manor Y, Nadim F (2004) [PubMed]	The activity phase of postsynaptic neurons (Bose et al 2004)
41	Bower JM, Beeman D (2003) [PubMed]	Simulations of oscillations in piriform cortex (Wilson & Bower 1992)
42	Brette R (2012) [PubMed]	Computing with neural synchrony (Brette 2012)
43	Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, et al. (2007) [PubMed]	Networks of spiking neurons: a review of tools and strategies (Brette et al. 2007)
44	Brunel N, Hakim V (1999) [PubMed]	Fast global oscillations in networks of I&F neurons with low firing rates (Brunel and Hakim 1999)
45	Buckley CL, Nowotny T (2011) [PubMed]	A Moth MGC Model-A HH network with quantitative rate reduction (Buckley & Nowotny 2011)
46	Bush D, Barry C, Manson D, Burgess N (2015) [PubMed]	Models of Vector Navigation with Grid Cells (Bush et al., 2015)
47	Bush D, Burgess N (2014) [PubMed]	Hybrid oscillatory interference / continuous attractor NN of grid cell firing (Bush & Burgess 2014)
48	Calin-Jageman RJ, Tunstall MJ, Mensh BD, Katz PS, Frost WN (2007) [PubMed]	Updated Tritonia Swim CPG (Calin-Jagemann et al. 2007)
49	Camunas-Mesa LA, Quiroga RQ (2013) [PubMed]	A detailed and fast model of extracellular recordings (Camunas-Mesa & Qurioga 2013)
50	Canakci S, Toy MF, Inci AF, Liu X, Kuzum D (2017) [PubMed]	Computational analysis of NN activity and spatial reach of sharp wave-ripples (Canakci et al 2017)
51	Carey RM, Sherwood WE, Shipley MT, Borisyuk A, Wachowiak M (2015) [PubMed]	Olfactory bulb juxtaglomerular models (Carey et al., 2015)
52	Carracedo L, Kjeldsen H, Cunnington L, Jenkins A, Schofield I, Cunningham M, Davies C,Traub R (2013) [PubMed]	Dynamic cortical interlaminar interactions (Carracedo et al. 2013)
53	Carver S, Roth E, Cowan NJ, Fortune ES (2008) [PubMed]	Synaptic plasticity can produce and enhance direction selectivity (Carver et al, 2008)
54	Casaleggio A, Hines ML, Migliore M (2014) [PubMed]	Model of arrhythmias in a cardiac cells network (Casaleggio et al. 2014)
55	Casellato C, Antonietti A, Garrido JA, Carrillo RR, Luque NR, Ros E, Pedrocchi A, D'Angelo E (2014) [PubMed]	Adaptive robotic control driven by a versatile spiking cerebellar network (Casellato et al. 2014)
56	Castro L, Aguiar P (2012) [PubMed]	Phase precession through acceleration of local theta rhythm (Castro & Aguiar 2011)
57	Castro L, Aguiar P (2014) [PubMed]	Grid cells from place cells (Castro & Aguiar, 2014)
58	Cataldo E, Byrne JH, Baxter DA (2006) [PubMed]	Computational Model of a Central Pattern Generator (Cataldo et al 2006)
59	Cavallari S, Panzeri S, Mazzoni A (2014) [PubMed]	I&F recurrent networks with current- or conductance-based synapses (Cavallari et al. 2014)
60	Cavarretta F, Burton SD, Igarashi KM, Hines ML, Shepherd GM, Migliore M (2018) [PubMed]	Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
61	Cavarretta F, Marasco A, Hines ML, Shepherd GM, Migliore M (2016) [PubMed]	Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
62	Cayco-Gajic NA, Clopath C, Silver RA (2017) [PubMed]	Sparse connectivity is required for decorrelation, pattern separation (Cayco-Gajic et al 2017)
63	Chadderdon GL, Mohan A, Suter BA, Neymotin SA, Kerr CC, Francis JT, Shepherd GM, Lytton WW (2014) [PubMed]	Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014)
64	Chadderdon GL, Neymotin SA, Kerr CC, Lytton WW (2012) [PubMed]	Reinforcement learning of targeted movement (Chadderdon et al. 2012)
65	Chambers JD, Bethwaite B, Diamond NT, Peachey T, Abramson D, Petrou S, Thomas EA (2012) [PubMed]	Parametric computation and persistent gamma in a cortical model (Chambers et al. 2012)
66	Chambers JD, Bornstein JC, Thomas EA (2011) [PubMed]	Modelling enteric neuron populations and muscle fed-state motor patterns (Chambers et al. 2011)
67	Chandrasekaran L, Matveev V, Bose A (2009) [PubMed]	Multistability of clustered states in a globally inhibitory network (Chandrasekaran et al. 2009)
68	Chavlis S, Petrantonakis PC, Poirazi P (2017) [PubMed]	Dentate Gyrus model including Granule cells with dendritic compartments (Chavlis et al 2017)
69	Chen JY, Marachlian E, Assisi C, Huerta R, Smith BH, Locatelli F, Bazhenov M (2015) [PubMed]	A model of antennal lobe of bee (Chen JY et al. 2015)
70	Choi H, Zhang L, Cembrowski M, Sabottke C, Markowitz A, Butts D, Kath W, Singer J, Riecke H (2014) [PubMed]	Bursting and oscillations in RD1 Retina driven by AII Amacrine Neuron (Choi et al. 2014)
71	Chow SF, Wick SD, Riecke H (2012) [PubMed]	Olfactory bulb network: neurogenetic restructuring and odor decorrelation (Chow et al. 2012)
72	Cisi RR, Kohn AF (2008) [PubMed]	Simulation system of spinal cord motor nuclei and assoc. nerves and muscles (Cisi and Kohn 2008)
73	Clopath C, Badura A, De Zeeuw CI, Brunel N (2014) [PubMed]	Vestibulo-Ocular Reflex model in Matlab (Clopath at al. 2014)
74	Conde-Sousa E, Aguiar P (2013) [PubMed]	Storing serial order in intrinsic excitability: a working memory model (Conde-Sousa & Aguiar 2013)
75	Corbit VL, Whalen TC, Zitelli KT, Crilly SY, Rubin JE, Gittis AH (2016) [PubMed]	Pallidostriatal projections promote beta oscillations (Corbit, Whalen, et al 2016)
76	Cruz GE, Sahley CL, Muller KJ (2007) [PubMed]	Competition for AP initiation sites in a circuit controlling simple learning (Cruz et al. 2007)
77	Cutsuridis V, Cobb S, Graham BP (2009) [PubMed]	Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
78	Cutsuridis V, Poirazi P (2015) [PubMed]	Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
79	Damodaran S, Cressman JR, Jedrzejewski-Szmek Z, Blackwell KT (2015) [PubMed]	Striatal NN model of MSNs and FSIs investigated effects of dopamine depletion (Damodaran et al 2015)
80	Damodaran S, Evans RC, Blackwell KT (2014) [PubMed]	Synchronicity of fast-spiking interneurons balances medium-spiny neurons (Damodaran et al. 2014)
81	Danner SM, Shevtsova NA, Frigon A, Rybak IA (2017) [PubMed]	Spinal circuits controlling limb coordination and gaits in quadrupeds (Danner et al 2017)
82	Daur N, Diehl F, Mader W, Stein W (2012) [PubMed]	Interaction of leak and IMI conductance on the STG over broad temperature range (Stadele et al 2015)
83	David F, Courtiol E, Buonviso N, Fourcaud-Trocmé N (2015) [PubMed]	Gamma-beta alternation in the olfactory bulb (David, Fourcaud-Trocmé et al., 2015)
84	David F, Linster C, Cleland TA (2008) [PubMed]	Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
85	Davison AP, Feng J, Brown D (2003) [PubMed]	Olfactory Bulb Network (Davison et al 2003)
86	Davison AP, Fregnac Y (2006) [PubMed]	Learning spatial transformations through STDP (Davison, Frégnac 2006)
87	de Almeida LB, Idiart MA, Linster C (2013) [PubMed]	ACh modulation in olfactory bulb and piriform cortex (de Almeida et al. 2013;Devore S, et al. 2014)
88	Destexhe A (2009) [PubMed]	Asynchronous irregular and up/down states in excitatory and inhibitory NNs (Destexhe 2009)
89	Destexhe A, Bal T, McCormick DA, Sejnowski TJ (1996) [PubMed]	Thalamocortical and Thalamic Reticular Network (Destexhe et al 1996)
90	Destexhe A, Contreras D, Sejnowski TJ, Steriade M (1994) [PubMed]	Thalamic Reticular Network (Destexhe et al 1994)
91	Devore S, de Almeida L, Linster C (2014) [PubMed]	ACh modulation in olfactory bulb and piriform cortex (de Almeida et al. 2013;Devore S, et al. 2014)
92	Diesmann M, Gewaltig MO, Aertsen A (1999) [PubMed]	Stable propagation of synchronous spiking in cortical neural networks (Diesmann et al 1999)
93	Doloc-Mihu A, Calabrese RL (2011) [PubMed]	Half-center oscillator database of leech heart interneuron model (Doloc-Mihu & Calabrese 2011)
94	Dovzhenok A, Park C, Worth RM, Rubchinsky LL (2013) [PubMed]	Failure of Deep Brain Stimulation in a basal ganglia neuronal network model (Dovzhenok et al. 2013)
95	Dragly SA, Hobbi Mobarhan M, Våvang Solbrå A, Tennøe S, Hafreager A, Malthe-Sørenssen A, Fyhn M, Hafting T, Einevoll GT (2017) [PubMed]	Neuronify: An Educational Simulator for Neural Circuits (Dragly et al 2017)
96	Du X, Ghosh BK, Ulinski P (2005) [PubMed]	Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006)
97	Du X, Ghosh BK, Ulinski P (2006) [PubMed]	Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006)
98	Duggins P, Stewart TC, Choo X, Eliasmith C (2017) [PubMed]	Effects of Guanfacine and Phenylephrine on a model of working memory (Duggins et al 2017)
99	Dura-Bernal S, Li K, Neymotin SA, Francis JT, Principe JC, Lytton WW (2016) [PubMed]	Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015)
100	Dura-Bernal S, Neymotin SA, Kerr CC, Sivagnanam S, Majumdar A, Francis JT, Lytton WW (2017) [PubMed]	Motor system model with reinforcement learning drives virtual arm (Dura-Bernal et al 2017)

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