MicrocircuitDB: Models sorted by First Author

Models sorted by First Author

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No.	Reference	Model
1 2 3 4 5 >
1	Abdellah M, Hernando J, Antille N, Eilemann S, Markram H, Schürmann F (2017) [PubMed]	The neocortical microcircuit collaboration portal (Markram et al. 2015)
2	Adams W, Graham JN, Han X, Riecke H (2018) [PubMed]	Neurogenesis in the olfactory bulb controlled by top-down input (Adams et al 2018)
3	Anderson WS, Azhar F, Kudela P, Bergey GK, Franaszczuk PJ (2012) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
4	Anderson WS, Kudela P, Cho J, Bergey GK, Franaszczuk PJ (2007) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
5	Anderson WS, Kudela P, Cho J, Bergey GK, Franaszczuk PJ (2007) [PubMed]	Studies of stimulus parameters for seizure disruption using NN simulations (Anderson et al. 2007)
6	Anderson WS, Kudela P, Weinberg S, Bergey GK, Franaszczuk PJ (2009) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
7	Argaman T, Golomb D (2017) [PubMed]	Conductance-based model of Layer-4 in the barrel cortex (Argaman et Golomb 2017)
8	Arkhipov A, Gouwens NW, Billeh YN, Gratiy S, Iyer R, Wei Z, Xu Z, Abbasi-Asl R, Berg J, Buice M, Cain N, da Costa N, de Vries S, Denman D, Durand S, Feng D, Jarsky T, Lecoq J, Lee B, Li L, Mihalas S, Ocker GK, Olsen SR, Reid RC, Soler-Llavina G, Sorensen SA, Wang Q, Waters J, Scanziani M, Koch C (2018) [PubMed]	Visual physiology of the layer 4 cortical circuit in silico (Arkhipov et al 2018)
9	Aubie B, Becker S, Faure PA (2009) [PubMed]	Duration-tuned neurons from the inferior colliculus of the big brown bat (Aubie et al. 2009)
10	Aubie B, Sayegh R, Faure PA (2012) [PubMed]	Duration-tuned neurons from the inferior colliculus of vertebrates (Aubie et al. 2012)
11	Ausborn J, Snyder AC, Shevtsova NA, Rybak IA, Rubin JE (2017) [PubMed]	State-dependent rhythmogenesis in a half-center locomotor CPG (Ausburn et al 2017)
12	Ausborn J, Stein W, Wolf H (2007) [PubMed]	Interaction of leak and IMI conductance on the STG over broad temperature range (Stadele et al 2015)
13	Avella Gonzalez OJ, Mansvelder HD, van Pelt J, van Ooyen A (2015) [PubMed]	H-currents effect on the fluctuation of gamma/beta oscillations (Avella-Gonzalez et al., 2015)
14	Avella Gonzalez OJ, Van Aerde KI, Mansvelder HD, Van Pelt J, Van Ooyen A (2014) [PubMed]	A two networks model of connectivity-dependent oscillatory activity (Avella OJ et al. 2014)
15	Avella Gonzalez OJ, van Aerde KI, van Elburg RA, Poil SS, Mansvelder HD, Linkenkaer-Hansen K, (2012) [PubMed]	Single E-I oscillating network with amplitude modulation (Avella Gonzalez et al. 2012)
16	Azhar F, Anderson WS (2012) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
17	Bahmer A, Langner G (2006) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
18	Bahmer A, Langner G (2006) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
19	Bahmer A, Langner G (2007) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
20	Bahmer A, Langner G (2009) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
21	Bahmer A, Langner G (2009) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
22	Bartos M, Vida I, Frotscher M, Meyer A, Monyer H, Geiger JR, Jonas P (2002) [PubMed]	Gamma oscillations in hippocampal interneuron networks (Bartos et al 2002)
23	Basu I, Kudela P, Anderson WS (2014) [PubMed]	A multilayer cortical model to study seizure propagation across microdomains (Basu et al. 2015)
24	Basu I, Kudela P, Korzeniewska A, Franaszczuk PJ, Anderson WS (2015) [PubMed]	A multilayer cortical model to study seizure propagation across microdomains (Basu et al. 2015)
25	Bathellier B, Lagier S, Faure P, Lledo PM (2006) [PubMed]	Olfactory bulb network model of gamma oscillations (Bathellier et al. 2006; Lagier et al. 2007)
26	Bathellier B, Lagier S, Faure P, Lledo PM (2006) [PubMed]	Olfactory bulb network model of gamma oscillations (Bathellier et al. 2006; Lagier et al. 2007)
27	Baxter DA, Byrne JH (2007) [PubMed]	Homosynaptic plasticity in the tail withdrawal circuit (TWC) of Aplysia (Baxter and Byrne 2006)
28	Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (1998) [PubMed]	Thalamocortical augmenting response (Bazhenov et al 1998)
29	Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (2002) [PubMed]	Sleep-wake transitions in corticothalamic system (Bazhenov et al 2002)
30	Beeman D (2013) [PubMed]	Auditory cortex layer IV network model (Beeman 2013)
31	Behuret S, Deleuze C, Gomez L, Fregnac Y and Bal T (2013) [PubMed]	A Model Circuit of Thalamocortical Convergence (Behuret et al. 2013)
32	beim Graben P, Rodrigues S (2013) [PubMed]	Biophysical model for field potentials of networks of I&F neurons (beim Graben & Serafim 2013)
33	Berzhanskaya J, Chernyy N, Gluckman BJ, Schiff SJ, Ascoli GA (2013) [PubMed]	Modulation of hippocampal rhythms by electric fields and network topology (Berzhanskaya et al. 2013)
34	Beverlin B, Kakalios J, Nykamp D, Netoff TI (2011) [PubMed]	Epileptic seizure model with Morris-Lecar neurons (Beverlin and Netoff 2011)
35	Bezaire M, Raikov I, Burk K, Armstrong C, Soltesz I (2016) [PubMed]	Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016)
36	Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I (2016) [PubMed]	Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016)
37	Bianchi D, De Michele P, Marchetti C, Tirozzi B, Cuomo S, Marie H, Migliore M (2014) [PubMed]	Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
38	Bogaard A, Parent J, Zochowski M, Booth V (2009) [PubMed]	Small world networks of Type I and Type II Excitable Neurons (Bogaard et al. 2009)
39	Bol K, Marsat G, Harvey-Girard E, Longtin A, Maler L (2011) [PubMed]	Cancelling redundant input in ELL pyramidal cells (Bol et al. 2011)
40	Bono J, Clopath C (2017) [PubMed]	Modeling dendritic spikes and plasticity (Bono and Clopath 2017)
41	Bono J, Clopath C (2019) [PubMed]	Inhibitory neuron plasticity as a mechanism for ocular dominance plasticity (Bono & Clopath 2019)
42	Bose A, Manor Y, Nadim F (2004) [PubMed]	The activity phase of postsynaptic neurons (Bose et al 2004)
43	Bower JM, Beeman D (2003) [PubMed]	Simulations of oscillations in piriform cortex (Wilson & Bower 1992)
44	Brette R (2012) [PubMed]	Computing with neural synchrony (Brette 2012)
45	Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, et al. (2007) [PubMed]	Networks of spiking neurons: a review of tools and strategies (Brette et al. 2007)
46	Brunel N, Hakim V (1999) [PubMed]	Fast global oscillations in networks of I&F neurons with low firing rates (Brunel and Hakim 1999)
47	Buckley CL, Nowotny T (2011) [PubMed]	A Moth MGC Model-A HH network with quantitative rate reduction (Buckley & Nowotny 2011)
48	Bush D, Barry C, Manson D, Burgess N (2015) [PubMed]	Models of Vector Navigation with Grid Cells (Bush et al., 2015)
49	Bush D, Burgess N (2014) [PubMed]	Hybrid oscillatory interference / continuous attractor NN of grid cell firing (Bush & Burgess 2014)
50	Calin-Jageman RJ, Tunstall MJ, Mensh BD, Katz PS, Frost WN (2007) [PubMed]	Updated Tritonia Swim CPG (Calin-Jagemann et al. 2007)
51	Camunas-Mesa LA, Quiroga RQ (2013) [PubMed]	A detailed and fast model of extracellular recordings (Camunas-Mesa & Qurioga 2013)
52	Canakci S, Toy MF, Inci AF, Liu X, Kuzum D (2017) [PubMed]	Computational analysis of NN activity and spatial reach of sharp wave-ripples (Canakci et al 2017)
53	Carey RM, Sherwood WE, Shipley MT, Borisyuk A, Wachowiak M (2015) [PubMed]	Olfactory bulb juxtaglomerular models (Carey et al., 2015)
54	Carracedo L, Kjeldsen H, Cunnington L, Jenkins A, Schofield I, Cunningham M, Davies C,Traub R (2013) [PubMed]	Dynamic cortical interlaminar interactions (Carracedo et al. 2013)
55	Carver S, Roth E, Cowan NJ, Fortune ES (2008) [PubMed]	Synaptic plasticity can produce and enhance direction selectivity (Carver et al, 2008)
56	Casaleggio A, Hines ML, Migliore M (2014) [PubMed]	Model of arrhythmias in a cardiac cells network (Casaleggio et al. 2014)
57	Casellato C, Antonietti A, Garrido JA, Carrillo RR, Luque NR, Ros E, Pedrocchi A, D'Angelo E (2014) [PubMed]	Adaptive robotic control driven by a versatile spiking cerebellar network (Casellato et al. 2014)
58	Castro L, Aguiar P (2012) [PubMed]	Phase precession through acceleration of local theta rhythm (Castro & Aguiar 2011)
59	Castro L, Aguiar P (2014) [PubMed]	Grid cells from place cells (Castro & Aguiar, 2014)
60	Cataldo E, Byrne JH, Baxter DA (2006) [PubMed]	Computational Model of a Central Pattern Generator (Cataldo et al 2006)
61	Cavallari S, Panzeri S, Mazzoni A (2014) [PubMed]	I&F recurrent networks with current- or conductance-based synapses (Cavallari et al. 2014)
62	Cavarretta F, Burton SD, Igarashi KM, Hines ML, Shepherd GM, Migliore M (2018) [PubMed]	Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
63	Cavarretta F, Marasco A, Hines ML, Shepherd GM, Migliore M (2016) [PubMed]	Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
64	Cayco-Gajic NA, Clopath C, Silver RA (2017) [PubMed]	Sparse connectivity is required for decorrelation, pattern separation (Cayco-Gajic et al 2017)
65	Chadderdon GL, Mohan A, Suter BA, Neymotin SA, Kerr CC, Francis JT, Shepherd GM, Lytton WW (2014) [PubMed]	Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014)
66	Chadderdon GL, Neymotin SA, Kerr CC, Lytton WW (2012) [PubMed]	Reinforcement learning of targeted movement (Chadderdon et al. 2012)
67	Chambers JD, Bethwaite B, Diamond NT, Peachey T, Abramson D, Petrou S, Thomas EA (2012) [PubMed]	Parametric computation and persistent gamma in a cortical model (Chambers et al. 2012)
68	Chambers JD, Bornstein JC, Thomas EA (2011) [PubMed]	Modelling enteric neuron populations and muscle fed-state motor patterns (Chambers et al. 2011)
69	Chandrasekaran L, Matveev V, Bose A (2009) [PubMed]	Multistability of clustered states in a globally inhibitory network (Chandrasekaran et al. 2009)
70	Chavlis S, Petrantonakis PC, Poirazi P (2017) [PubMed]	Dentate Gyrus model including Granule cells with dendritic compartments (Chavlis et al 2017)
71	Chen JY, Marachlian E, Assisi C, Huerta R, Smith BH, Locatelli F, Bazhenov M (2015) [PubMed]	A model of antennal lobe of bee (Chen JY et al. 2015)
72	Choi H, Zhang L, Cembrowski M, Sabottke C, Markowitz A, Butts D, Kath W, Singer J, Riecke H (2014) [PubMed]	Bursting and oscillations in RD1 Retina driven by AII Amacrine Neuron (Choi et al. 2014)
73	Chow SF, Wick SD, Riecke H (2012) [PubMed]	Olfactory bulb network: neurogenetic restructuring and odor decorrelation (Chow et al. 2012)
74	Cisi RR, Kohn AF (2008) [PubMed]	Simulation system of spinal cord motor nuclei and assoc. nerves and muscles (Cisi and Kohn 2008)
75	Clopath C, Badura A, De Zeeuw CI, Brunel N (2014) [PubMed]	Vestibulo-Ocular Reflex model in Matlab (Clopath at al. 2014)
76	Conde-Sousa E, Aguiar P (2013) [PubMed]	Storing serial order in intrinsic excitability: a working memory model (Conde-Sousa & Aguiar 2013)
77	Corbit VL, Whalen TC, Zitelli KT, Crilly SY, Rubin JE, Gittis AH (2016) [PubMed]	Pallidostriatal projections promote beta oscillations (Corbit, Whalen, et al 2016)
78	Cruz GE, Sahley CL, Muller KJ (2007) [PubMed]	Competition for AP initiation sites in a circuit controlling simple learning (Cruz et al. 2007)
79	Cutsuridis V, Cobb S, Graham BP (2009) [PubMed]	Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
80	Cutsuridis V, Poirazi P (2015) [PubMed]	Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
81	Damodaran S, Cressman JR, Jedrzejewski-Szmek Z, Blackwell KT (2015) [PubMed]	Striatal NN model of MSNs and FSIs investigated effects of dopamine depletion (Damodaran et al 2015)
82	Damodaran S, Evans RC, Blackwell KT (2014) [PubMed]	Synchronicity of fast-spiking interneurons balances medium-spiny neurons (Damodaran et al. 2014)
83	Danner SM, Shevtsova NA, Frigon A, Rybak IA (2017) [PubMed]	Spinal circuits controlling limb coordination and gaits in quadrupeds (Danner et al 2017)
84	Daur N, Diehl F, Mader W, Stein W (2012) [PubMed]	Interaction of leak and IMI conductance on the STG over broad temperature range (Stadele et al 2015)
85	David F, Courtiol E, Buonviso N, Fourcaud-Trocmé N (2015) [PubMed]	Gamma-beta alternation in the olfactory bulb (David, Fourcaud-Trocmé et al., 2015)
86	David F, Linster C, Cleland TA (2008) [PubMed]	Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
87	Davison AP, Feng J, Brown D (2003) [PubMed]	Olfactory Bulb Network (Davison et al 2003)
88	Davison AP, Fregnac Y (2006) [PubMed]	Learning spatial transformations through STDP (Davison, Frégnac 2006)
89	de Almeida LB, Idiart MA, Linster C (2013) [PubMed]	ACh modulation in olfactory bulb and piriform cortex (de Almeida et al. 2013;Devore S, et al. 2014)
90	Destexhe A (2009) [PubMed]	Asynchronous irregular and up/down states in excitatory and inhibitory NNs (Destexhe 2009)
91	Destexhe A, Bal T, McCormick DA, Sejnowski TJ (1996) [PubMed]	Thalamocortical and Thalamic Reticular Network (Destexhe et al 1996)
92	Destexhe A, Contreras D, Sejnowski TJ, Steriade M (1994) [PubMed]	Thalamic Reticular Network (Destexhe et al 1994)
93	Devore S, de Almeida L, Linster C (2014) [PubMed]	ACh modulation in olfactory bulb and piriform cortex (de Almeida et al. 2013;Devore S, et al. 2014)
94	Diesmann M, Gewaltig MO, Aertsen A (1999) [PubMed]	Stable propagation of synchronous spiking in cortical neural networks (Diesmann et al 1999)
95	Doloc-Mihu A, Calabrese RL (2011) [PubMed]	Half-center oscillator database of leech heart interneuron model (Doloc-Mihu & Calabrese 2011)
96	Dovzhenok A, Park C, Worth RM, Rubchinsky LL (2013) [PubMed]	Failure of Deep Brain Stimulation in a basal ganglia neuronal network model (Dovzhenok et al. 2013)
97	Dragly SA, Hobbi Mobarhan M, Våvang Solbrå A, Tennøe S, Hafreager A, Malthe-Sørenssen A, Fyhn M, Hafting T, Einevoll GT (2017) [PubMed]	Neuronify: An Educational Simulator for Neural Circuits (Dragly et al 2017)
98	Du X, Ghosh BK, Ulinski P (2005) [PubMed]	Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006)
99	Du X, Ghosh BK, Ulinski P (2006) [PubMed]	Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006)
100	Duggins P, Stewart TC, Choo X, Eliasmith C (2017) [PubMed]	Effects of Guanfacine and Phenylephrine on a model of working memory (Duggins et al 2017)

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