MicrocircuitDB: Models sorted by First Author

Models sorted by First Author

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No.	Reference	Model
1 2 3 4 5 >
1	Abdellah M, Hernando J, Antille N, Eilemann S, Markram H, Schürmann F (2017) [PubMed]	The neocortical microcircuit collaboration portal (Markram et al. 2015)
2	Adams W, Graham JN, Han X, Riecke H (2019) [PubMed]	Neurogenesis in the olfactory bulb controlled by top-down input (Adams et al 2018)
3	Ai H, Kai K, Kumaraswamy A, Ikeno H, Wachtler T (2017) [PubMed]	Vibration-sensitive Honeybee interneurons (Ai et al 2017)
4	Anderson WS, Azhar F, Kudela P, Bergey GK, Franaszczuk PJ (2012) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
5	Anderson WS, Kudela P, Cho J, Bergey GK, Franaszczuk PJ (2007) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
6	Anderson WS, Kudela P, Cho J, Bergey GK, Franaszczuk PJ (2007) [PubMed]	Studies of stimulus parameters for seizure disruption using NN simulations (Anderson et al. 2007)
7	Anderson WS, Kudela P, Weinberg S, Bergey GK, Franaszczuk PJ (2009) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
8	Argaman T, Golomb D (2017) [PubMed]	Conductance-based model of Layer-4 in the barrel cortex (Argaman et Golomb 2017)
9	Arkhipov A, Gouwens NW, Billeh YN, Gratiy S, Iyer R, Wei Z, Xu Z, Abbasi-Asl R, Berg J, Buice M, Cain N, da Costa N, de Vries S, Denman D, Durand S, Feng D, Jarsky T, Lecoq J, Lee B, Li L, Mihalas S, Ocker GK, Olsen SR, Reid RC, Soler-Llavina G, Sorensen SA, Wang Q, Waters J, Scanziani M, Koch C (2018) [PubMed]	Visual physiology of the layer 4 cortical circuit in silico (Arkhipov et al 2018)
10	Aubie B, Becker S, Faure PA (2009) [PubMed]	Duration-tuned neurons from the inferior colliculus of the big brown bat (Aubie et al. 2009)
11	Aubie B, Sayegh R, Faure PA (2012) [PubMed]	Duration-tuned neurons from the inferior colliculus of vertebrates (Aubie et al. 2012)
12	Augustin H, Zylbertal A, Partridge L (2019) [PubMed]	Escape response latency in the Giant Fiber System of Drosophila melanogastor (Augustin et al 2019)
13	Ausborn J, Koizumi H, Barnett WH, John TT, Zhang R, Molkov YI, Smith JC, Rybak IA (2018) [PubMed]	Core respiratory network organization: Insights from optogenetics and modeling (Ausborn et al 2018)
14	Ausborn J, Snyder AC, Shevtsova NA, Rybak IA, Rubin JE (2018) [PubMed]	State-dependent rhythmogenesis in a half-center locomotor CPG (Ausborn et al 2017)
15	Ausborn J, Stein W, Wolf H (2007) [PubMed]	Interaction of leak and IMI conductance on the STG over broad temperature range (Stadele et al 2015)
16	Avella Gonzalez OJ, Mansvelder HD, van Pelt J, van Ooyen A (2015) [PubMed]	H-currents effect on the fluctuation of gamma/beta oscillations (Avella-Gonzalez et al., 2015)
17	Avella Gonzalez OJ, van Aerde KI, Mansvelder HD, van Pelt J, van Ooyen A (2014) [PubMed]	A two networks model of connectivity-dependent oscillatory activity (Avella OJ et al. 2014)
18	Avella Gonzalez OJ, van Aerde KI, van Elburg RA, Poil SS, Mansvelder HD, Linkenkaer-Hansen K, van Pelt J, van Ooyen A (2012) [PubMed]	Single E-I oscillating network with amplitude modulation (Avella Gonzalez et al. 2012)
19	Azhar F, Anderson WS (2012) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
20	Bahmer A, Langner G (2006) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
21	Bahmer A, Langner G (2006) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
22	Bahmer A, Langner G (2007) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
23	Bahmer A, Langner G (2009) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
24	Bahmer A, Langner G (2010) [PubMed]	Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
25	Barros-Zulaica N, Rahmon J, Chindemi G, Perin R, Markram H, Muller E, Ramaswamy S (2019) [PubMed]	The neocortical microcircuit collaboration portal (Markram et al. 2015)
26	Bartos M, Vida I, Frotscher M, Meyer A, Monyer H, Geiger JR, Jonas P (2002) [PubMed]	Gamma oscillations in hippocampal interneuron networks (Bartos et al 2002)
27	Basu I, Kudela P, Anderson WS (2014) [PubMed]	A multilayer cortical model to study seizure propagation across microdomains (Basu et al. 2015)
28	Basu I, Kudela P, Korzeniewska A, Franaszczuk PJ, Anderson WS (2015) [PubMed]	A multilayer cortical model to study seizure propagation across microdomains (Basu et al. 2015)
29	Bathellier B, Lagier S, Faure P, Lledo PM (2006) [PubMed]	Olfactory bulb network model of gamma oscillations (Bathellier et al. 2006; Lagier et al. 2007)
30	Bathellier B, Lagier S, Faure P, Lledo PM (2006) [PubMed]	Olfactory bulb network model of gamma oscillations (Bathellier et al. 2006; Lagier et al. 2007)
31	Baxter DA, Byrne JH (2007) [PubMed]	Homosynaptic plasticity in the tail withdrawal circuit (TWC) of Aplysia (Baxter and Byrne 2006)
32	Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (1998) [PubMed]	Thalamocortical augmenting response (Bazhenov et al 1998)
33	Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (2002) [PubMed]	Sleep-wake transitions in corticothalamic system (Bazhenov et al 2002)
34	Beeman D (2013) [PubMed]	Auditory cortex layer IV network model (Beeman 2013)
35	Beeman D, Yu A, Crone J (2019) [PubMed]	ACnet23 primary auditory cortex model (Beeman et al 2019)
36	Behuret S, Deleuze C, Gomez L, Fregnac Y, Bal T (2013) [PubMed]	A Model Circuit of Thalamocortical Convergence (Behuret et al. 2013)
37	Beim Graben P, Rodrigues S (2012) [PubMed]	Biophysical model for field potentials of networks of I&F neurons (beim Graben & Serafim 2013)
38	Berecki G, Bryson A, Terhag J, Maljevic S, Gazina EV, Hill SL, Petrou S (2019) [PubMed]	SCN1A gain-of-function in early infantile encephalopathy (Berecki et al 2019)
39	Berzhanskaya J, Chernyy N, Gluckman BJ, Schiff SJ, Ascoli GA (2013) [PubMed]	Modulation of hippocampal rhythms by electric fields and network topology (Berzhanskaya et al. 2013)
40	Beverlin B, Kakalios J, Nykamp D, Netoff TI (2012) [PubMed]	Epileptic seizure model with Morris-Lecar neurons (Beverlin and Netoff 2011)
41	Bezaire M, Raikov I, Burk K, Armstrong C, Soltesz I (2016) [PubMed]	Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016)
42	Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I (2016) [PubMed]	Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016)
43	Bianchi D, De Michele P, Marchetti C, Tirozzi B, Cuomo S, Marie H, Migliore M (2014) [PubMed]	Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
44	Billeh YN, Cai B, Gratiy SL, Dai K, Iyer R, Gouwens NW, Abbasi-Asl R, Jia X, Siegle JH, Olsen SR, Koch C, Mihalas S, Arkhipov A (2020) [PubMed]	Systematic integration of data into multi-scale models of mouse primary V1 (Billeh et al 2020)
45	Birdno MJ, Kuncel AM, Dorval AD, Turner DA, Gross RE, Grill WM (2012) [PubMed]	Thalamic network model of deep brain stimulation in essential tremor (Birdno et al. 2012)
46	Bittner SR, Williamson RC, Snyder AC, Litwin-Kumar A, Doiron B, Chase SM, Smith MA, Yu BM (2017) [PubMed]	Excitatory and inhibitory population activity (Bittner et al 2017) (Litwin-Kumar & Doiron 2017)
47	Bogaard A, Parent J, Zochowski M, Booth V (2009) [PubMed]	Small world networks of Type I and Type II Excitable Neurons (Bogaard et al. 2009)
48	Bol K, Marsat G, Harvey-Girard E, Longtin A, Maler L (2011) [PubMed]	Cancelling redundant input in ELL pyramidal cells (Bol et al. 2011)
49	Bono J, Clopath C (2017) [PubMed]	Modeling dendritic spikes and plasticity (Bono and Clopath 2017)
50	Bono J, Clopath C (2019) [PubMed]	Inhibitory neuron plasticity as a mechanism for ocular dominance plasticity (Bono & Clopath 2019)
51	Bose A, Manor Y, Nadim F (2004) [PubMed]	The activity phase of postsynaptic neurons (Bose et al 2004)
52	Bower JM, Beeman D (2003) [PubMed]	Simulations of oscillations in piriform cortex (Wilson & Bower 1992)
53	Brette R (2012) [PubMed]	Computing with neural synchrony (Brette 2012)
54	Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, Goodman PH, Harris FC, Zirpe M, Natschläger T, Pecevski D, Ermentrout B, Djurfeldt M, Lansner A, Rochel O, Vieville T, Muller E, Davison AP, El Boustani S, Destexhe A (2007) [PubMed]	Networks of spiking neurons: a review of tools and strategies (Brette et al. 2007)
55	Brunel N, Hakim V (1999) [PubMed]	Fast global oscillations in networks of I&F neurons with low firing rates (Brunel and Hakim 1999)
56	Buchin A, Chizhov A, Huberfeld G, Miles R, Gutkin BS (2016) [PubMed]	Subiculum network model with dynamic chloride/potassium homeostasis (Buchin et al 2016)
57	Buckley CL, Nowotny T (2011) [PubMed]	A Moth MGC Model-A HH network with quantitative rate reduction (Buckley & Nowotny 2011)
58	Bush D, Barry C, Manson D, Burgess N (2015) [PubMed]	Models of Vector Navigation with Grid Cells (Bush et al., 2015)
59	Bush D, Burgess N (2014) [PubMed]	Hybrid oscillatory interference / continuous attractor NN of grid cell firing (Bush & Burgess 2014)
60	Bush D, Burgess N (2020) [PubMed]	Decoding movement trajectory from simulated grid cell population activity (Bush & Burgess 2019)
61	Cakan C, Obermayer K (2020) [PubMed]	Mean-field models of neural populations under electrical stimulation (Cakan & Obermayer 2020)
62	Calin-Jageman RJ, Tunstall MJ, Mensh BD, Katz PS, Frost WN (2007) [PubMed]	Updated Tritonia Swim CPG (Calin-Jagemann et al. 2007)
63	Camuñas-Mesa LA, Quiroga RQ (2013) [PubMed]	A detailed and fast model of extracellular recordings (Camunas-Mesa & Qurioga 2013)
64	Canakci S, Toy MF, Inci AF, Liu X, Kuzum D (2017) [PubMed]	Computational analysis of NN activity and spatial reach of sharp wave-ripples (Canakci et al 2017)
65	Carey RM, Sherwood WE, Shipley MT, Borisyuk A, Wachowiak M (2015) [PubMed]	Olfactory bulb juxtaglomerular models (Carey et al., 2015)
66	Carracedo LM, Kjeldsen H, Cunnington L, Jenkins A, Schofield I, Cunningham MO, Davies CH, Traub RD, Whittington MA (2013) [PubMed]	Electrodecrements in in vitro model of infantile spasms (Traub et al 2020)
67	Carracedo LM, Kjeldsen H, Cunnington L, Jenkins A, Schofield I, Cunningham MO, Davies CH, Traub RD, Whittington MA (2013) [PubMed]	Dynamic cortical interlaminar interactions (Carracedo et al. 2013)
68	Carver S, Roth E, Cowan NJ, Fortune ES (2008) [PubMed]	Synaptic plasticity can produce and enhance direction selectivity (Carver et al, 2008)
69	Casaleggio A, Hines ML, Migliore M (2014) [PubMed]	Model of arrhythmias in a cardiac cells network (Casaleggio et al. 2014)
70	Casellato C, Antonietti A, Garrido JA, Carrillo RR, Luque NR, Ros E, Pedrocchi A, D'Angelo E (2014) [PubMed]	Adaptive robotic control driven by a versatile spiking cerebellar network (Casellato et al. 2014)
71	Castro L, Aguiar P (2012) [PubMed]	Phase precession through acceleration of local theta rhythm (Castro & Aguiar 2011)
72	Castro L, Aguiar P (2014) [PubMed]	Grid cells from place cells (Castro & Aguiar, 2014)
73	Cataldo E, Byrne JH, Baxter DA (2006) [PubMed]	Computational Model of a Central Pattern Generator (Cataldo et al 2006)
74	Cavallari S, Panzeri S, Mazzoni A (2014) [PubMed]	I&F recurrent networks with current- or conductance-based synapses (Cavallari et al. 2014)
75	Cavarretta F, Burton SD, Igarashi KM, Shepherd GM, Hines ML, Migliore M (2018) [PubMed]	Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
76	Cavarretta F, Marasco A, Hines ML, Shepherd GM, Migliore M (2016) [PubMed]	Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
77	Cayco-Gajic NA, Clopath C, Silver RA (2017) [PubMed]	Sparse connectivity is required for decorrelation, pattern separation (Cayco-Gajic et al 2017)
78	Chadderdon GL, Mohan A, Suter BA, Neymotin SA, Kerr CC, Francis JT, Shepherd GM, Lytton WW (2014) [PubMed]	Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014)
79	Chadderdon GL, Neymotin SA, Kerr CC, Lytton WW (2012) [PubMed]	Reinforcement learning of targeted movement (Chadderdon et al. 2012)
80	Chambers JD, Bethwaite B, Diamond NT, Peachey T, Abramson D, Petrou S, Thomas EA (2012) [PubMed]	Parametric computation and persistent gamma in a cortical model (Chambers et al. 2012)
81	Chambers JD, Bornstein JC, Thomas EA (2011) [PubMed]	Modelling enteric neuron populations and muscle fed-state motor patterns (Chambers et al. 2011)
82	Chandrasekaran L, Matveev V, Bose A (2009) [PubMed]	Multistability of clustered states in a globally inhibitory network (Chandrasekaran et al. 2009)
83	Chavlis S, Petrantonakis PC, Poirazi P (2017) [PubMed]	Dentate Gyrus model including Granule cells with dendritic compartments (Chavlis et al 2017)
84	Chen JY, Marachlian E, Assisi C, Huerta R, Smith BH, Locatelli F, Bazhenov M (2015) [PubMed]	A model of antennal lobe of bee (Chen JY et al. 2015)
85	Chizhov AV, Zefirov AV, Amakhin DV, Smirnova EY, Zaitsev AV (2018) [PubMed]	Minimal model of interictal and ictal discharges “Epileptor-2” (Chizhov et al 2018)
86	Choi H, Zhang L, Cembrowski MS, Sabottke CF, Markowitz AL, Butts DA, Kath WL, Singer JH, Riecke H (2014) [PubMed]	Bursting and oscillations in RD1 Retina driven by AII Amacrine Neuron (Choi et al. 2014)
87	Chow SF, Wick SD, Riecke H (2012) [PubMed]	Olfactory bulb network: neurogenetic restructuring and odor decorrelation (Chow et al. 2012)
88	Chrysanthidis N, Fiebig F, Lansner A (2019) [PubMed]	An electrophysiological model of GABAergic double bouquet cells (Chrysanthidis et al. 2019)
89	Cisi RR, Kohn AF (2008) [PubMed]	Simulation system of spinal cord motor nuclei and assoc. nerves and muscles (Cisi and Kohn 2008)
90	Clopath C, Badura A, De Zeeuw CI, Brunel N (2014) [PubMed]	Vestibulo-Ocular Reflex model in Matlab (Clopath at al. 2014)
91	Conde-Sousa E, Aguiar P (2013) [PubMed]	Storing serial order in intrinsic excitability: a working memory model (Conde-Sousa & Aguiar 2013)
92	Corbit VL, Whalen TC, Zitelli KT, Crilly SY, Rubin JE, Gittis AH (2016) [PubMed]	Pallidostriatal projections promote beta oscillations (Corbit, Whalen, et al 2016)
93	Costa RM, Baxter DA, Byrne JH (2020) [PubMed]	Computational model of the distributed representation of operant reward memory (Costa et al. 2020)
94	Crone JC, Vindiola MM, Yu AB, Boothe DL, Beeman D, Oie KS, Franaszczuk PJ (2019) [PubMed]	ACnet23 primary auditory cortex model (Beeman et al 2019)
95	Crone JC, Vindiola MM, Yu AB, Boothe DL, Beeman D, Oie KS, Franaszczuk PJ (2019) [PubMed]	Large scale neocortical model for PGENESIS (Crone et al 2019)
96	Cruz GE, Sahley CL, Muller KJ (2007) [PubMed]	Competition for AP initiation sites in a circuit controlling simple learning (Cruz et al. 2007)
97	Csernai M, Borbély S, Kocsis K, Burka D, Fekete Z, Balogh V, Káli S, Emri Z, Barthó P (2019) [PubMed]	Dynamics of sleep oscillations coupled to brain temperature on multiple scales (Csernai et al 2019)
98	Cutsuridis V, Cobb S, Graham BP (2010) [PubMed]	Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
99	Cutsuridis V, Poirazi P (2015) [PubMed]	Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
100	Damodaran S, Cressman JR, Jedrzejewski-Szmek Z, Blackwell KT (2015) [PubMed]	Striatal NN model of MSNs and FSIs investigated effects of dopamine depletion (Damodaran et al 2015)

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