MAIN FILE: Spiny.g
Script files: Script_*.g
Input files:
Ca input: InpCaAlpsxxx.txt
DA input: InpDAAlpxxx.txt
where xxx is a amplitude of the input.
To reproduce figures in the paper, please run script files as below.
.g files are the file format of GENESIS/kinetikit
.cps files are the file format of COPASI
Fig5
Script_ctr_Ca010.g
Script_ctr_Ca100.g
Script_ctr_DA.g
Fig6
Script_ctr_Ca010.g
Script_ctr_Ca.g
Script_DA000_DA_Ca010.g
Fig7
many...
Script_ctr_Ca???.g
Script_PP1fix_Ca???.g
Script_PKAfix_Ca???.g
Script_CaMKIIfix_Ca???.g
Fig8
Script_ctr_Ca.g
Script_CDK5CK1_Ca.g
Fig9
Script_ctr_Ca.g
Script_ctr_DA.g
Script_DKO_Ca.g
Script_DKO_DA.g
Fig10
Script_ctr_Ca010.g
Script_ctr_Ca.g
Script_DKO_Ca010.g
Script_DKO_Ca.g
Script_ctr_Ca???.g
Script_DKO_Ca???.g
Fig11
Loop4_analysis.cps
Fig12
Loop4_analysis.cps
Fig13
Script_Loop_InhPKA_Kd*.g
Script_Loop_PKAPP2A_Kcat*.g
Script_Loop_PP2AD75_Kcat*.g
Fig14
Script_DA020_DA_Ca010.g
Script_DA020_Ca.g
Script_DA020_Ca010.g
Fig. S1
Script_ctr_Ca100_timedn500.g
Script_ctr_Ca100_timedp500.g
Script_ctr_Ca010_timedn100.g
Script_ctr_Ca010_timedp050.g
Script_ctr_Ca010_timedn050.g
Script_ctr_Ca010_timedp100.g
Script_ctr_Ca010_timedn500.g
Script_ctr_Ca010_timedp500.g
Fig. S2
Script_long_Ca.g
Script_long_Ca010.g |