//genesis
//nsynapses
int densityMax_soma_AMPA_SP = 0, densityMax_soma_GABA_SP = 3, densityMax_pd_AMPA_SP = 0, densityMax_pd_GABA_SP = 6
int densityMax_sd_AMPA_SP = 1, densityMax_sd_GABA_SP = 3 , densityMax_td_AMPA_SP = 2, densityMax_td_GABA_SP = 1
int densityMax_soma_AMPA_FS = 1, densityMax_soma_GABA_FS = 3, densityMax_pd_AMPA_FS = 1, densityMax_pd_GABA_FS = 3
int densityMax_sd_AMPA_FS = 0, densityMax_sd_GABA_FS = 3 , densityMax_td_AMPA_FS = 1, densityMax_td_GABA_FS = 0
//3 6 3 1
int prim_dend_num_SP = 4, sec_dend_num_SP = 8, tert_dend_num_SP = 16*11
int nAMPA_SP = {densityMax_soma_AMPA_SP} + {densityMax_pd_AMPA_SP}*{prim_dend_num_SP} + {densityMax_sd_AMPA_SP}*{sec_dend_num_SP} + {densityMax_td_AMPA_SP}*{tert_dend_num_SP}
int nGABA_SP = {densityMax_soma_GABA_SP} + {densityMax_pd_GABA_SP}*{prim_dend_num_SP} + {densityMax_sd_GABA_SP}*{sec_dend_num_SP} + {densityMax_td_GABA_SP}*{tert_dend_num_SP}
int prim_dend_num_FS = 3*2, sec_dend_num_FS = 6*4, tert_dend_num_FS = 12*8
int nAMPA_FS = {densityMax_soma_AMPA_FS} + {densityMax_pd_AMPA_FS}*{prim_dend_num_FS} + {densityMax_sd_AMPA_FS}*{sec_dend_num_FS} + {densityMax_td_AMPA_FS}*{tert_dend_num_FS}
int nGABA_FS = {densityMax_soma_GABA_FS} + {densityMax_pd_GABA_FS}*{prim_dend_num_FS} + {densityMax_sd_GABA_FS}*{sec_dend_num_FS} + {densityMax_td_GABA_FS}*{tert_dend_num_FS}
function add_field (cellpath)
str cellpath, CName
//echo "entering add_field cellpath" {cellpath}
if ({cellpath} == "/library/SPcell_D1" || {cellpath} == "/library/SPcell_D2")
foreach CName ({el {cellpath}/##[TYPE=compartment]})
// echo " entered foreach"
addfield {CName} nsynallowed_a
addfield {CName} nsynallowed_g
if ({getfield {CName} position}==1.599999996e-05)
// echo "soma"
setfield {CName} nsynallowed_a {densityMax_soma_AMPA_SP}
setfield {CName} nsynallowed_g {densityMax_soma_GABA_SP}
elif ({getfield {CName} position}==3.599999764e-05)
// echo "prim"
setfield {CName} nsynallowed_a {densityMax_pd_AMPA_SP}
setfield {CName} nsynallowed_g {densityMax_pd_GABA_SP}
elif ({getfield {CName} position}==6.022999878e-05)
// echo "sec"
setfield {CName} nsynallowed_a {densityMax_sd_AMPA_SP}
setfield {CName} nsynallowed_g {densityMax_sd_GABA_SP}
elif ({getfield {CName} position}>7.0e-05)
// echo "tert"
setfield {CName} nsynallowed_a {densityMax_td_AMPA_SP}
setfield {CName} nsynallowed_g {densityMax_td_GABA_SP}
end
end
elif ({cellpath} == "/library/FScell")
foreach CName ({el {cellpath}/##[TYPE=compartment]})
addfield {CName} nsynallowed_a
addfield {CName} nsynallowed_g
if ({getfield {CName} position}==1.999999949e-05)
// echo "soma"
setfield {CName} nsynallowed_a {densityMax_soma_AMPA_FS}
setfield {CName} nsynallowed_g {densityMax_soma_GABA_FS}
elif ({getfield {CName} position}>6.0e-05 && {getfield {CName} position}<12.0e-05)
// echo "prim"
setfield {CName} nsynallowed_a {densityMax_pd_AMPA_FS}
setfield {CName} nsynallowed_g {densityMax_pd_GABA_FS}
elif ({getfield {CName} position}>14.0e-05 && {getfield {CName} position}<26.0e-05)
// echo "sec"
setfield {CName} nsynallowed_a {densityMax_sd_AMPA_FS}
setfield {CName} nsynallowed_g {densityMax_sd_GABA_FS}
elif ({getfield {CName} position}>28.0e-05 && {getfield {CName} position}<50.0e-05)
// echo "tert"
setfield {CName} nsynallowed_a {densityMax_td_AMPA_FS}
setfield {CName} nsynallowed_g {densityMax_td_GABA_FS}
end
end
end
end //function end
//SP
//int nAMPA = 360
//int nGABA = 227
//FS
//nAMPA = 127
//nGABA = 93
//echo "nAMPA = "{nAMPA}""
//echo "nGABA = "{nGABA}""
function ndups_a (pDup,n)
float pDup
int n
int nD_a = {round {{pDup}*{n}}}
return {nD_a}
end
function ndups_g (pDup,n)
float pDup
int n
int nD_g = {round {{pDup}*{n}}}
return {nD_g}
end
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