Generation of granule cell dendritic morphology (Schneider et al. 2014)

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The following code was used to generate a complete population of 1.2 million granule cell dendritic morphologies within a realistic three-dimensional context. These generated dendritic morphologies match the known biological variability and context-dependence of morphological features.
1 . Schneider CJ, Cuntz H, Soltesz I (2014) Linking macroscopic with microscopic neuroanatomy using synthetic neuronal populations. PLoS Comput Biol 10:e1003921 [PubMed]
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Model Information (Click on a link to find other models with that property)
Model Type: Dendrite;
Brain Region(s)/Organism:
Cell Type(s): Dentate gyrus granule GLU cell;
Gap Junctions:
Simulation Environment: MATLAB;
Model Concept(s): Detailed Neuronal Models;
Search NeuronDB for information about:  Dentate gyrus granule GLU cell;
module load MATLAB/r2014a

mcc -m -R -singleCompThread -R '-nodisplay,-nojvm' dentate_1_s_fillsomata.m      -a ./Supporting_Files
mcc -m -R -singleCompThread -R '-nodisplay,-nojvm' dentate_2_p_somataposition.m  -a ./Supporting_Files
mcc -m -R -singleCompThread -R '-nodisplay,-nojvm' dentate_3_s_combinesomata.m
mcc -m -R -singleCompThread -R '-nodisplay,-nojvm' dentate_4_p_findallpoints.m   -a ./Supporting_Files
mcc -m -R -singleCompThread -R '-nodisplay,-nojvm' dentate_5_s_choosepoints.m    -a ./Supporting_Files
mcc -m -R -singleCompThread -R '-nodisplay,-nojvm' dentate_6_p_createtrees.m     -a ./Supporting_Files  -a ./TREES1.15
mcc -m -R -singleCompThread -R '-nodisplay,-nojvm' dentate_7_p_jitter.m          -a ./Supporting_Files  -a ./TREES1.15
mcc -m -R -singleCompThread -R '-nodisplay,-nojvm' dentate_8_p_taper.m           -a ./Supporting_Files  -a ./TREES1.15 
mcc -m -R -singleCompThread -R '-nodisplay,-nojvm' dentate_9_p_analysis.m        -a ./Supporting_Files  -a ./TREES1.15
mcc -m -R -singleCompThread -R '-nodisplay,-nojvm' dentate_10_s_combinefiles.m