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Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017)
 
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Model Information
Model File
Accession:
223273
We tested the reproducibility and comparability of four astrocyte models (Manninen, Havela, Linne, 2017). Model by Riera et al. (2011) was one of them. We implemented and ran the model by Riera et al. (2011) using Jupyter Notebook. Model codes produce results of Figures 1 and 2 in Manninen, Havela, Linne (2017).
Reference:
1 .
Manninen T, Havela R, Linne ML (2017) Reproducibility and comparability of computational models for astrocyte calcium excitability
Front. Neuroinform.
2 .
Riera J, Hatanaka R, Ozaki T, Kawashima R (2011) Modeling the spontaneous Ca2+ oscillations in astrocytes: Inconsistencies and usefulness.
J Integr Neurosci
10
:439-73
[
PubMed
]
3 .
Riera J, Hatanaka R, Uchida T, Ozaki T, Kawashima R (2011) Quantifying the uncertainty of spontaneous Ca2+ oscillations in astrocytes: particulars of Alzheimer's disease.
Biophys J
101
:554-64
[
PubMed
]
Citations
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Model Information
(Click on a link to find other models with that property)
Model Type:
Glia;
Brain Region(s)/Organism:
Hippocampus;
Cell Type(s):
Astrocyte;
Channel(s):
Gap Junctions:
Receptor(s):
IP3;
Gene(s):
Transmitter(s):
Simulation Environment:
Python;
Model Concept(s):
Calcium dynamics;
Oscillations;
Signaling pathways;
Implementer(s):
Manninen, Tiina [tiina.h.manninen at gmail.com];
Search NeuronDB
for information about:
IP3
;
/
Riera2011
readme.html
Riera2011.ipynb
Riera2011_Ca_free_constant.ipynb
screenshot.png
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