Model of the cerebellar granular network (Sudhakar et al 2017)

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Accession:232023
"The granular layer, which mainly consists of granule and Golgi cells, is the first stage of the cerebellar cortex and processes spatiotemporal information transmitted by mossy fiber inputs with a wide variety of firing patterns. To study its dynamics at multiple time scales in response to inputs approximating real spatiotemporal patterns, we constructed a large-scale 3D network model of the granular layer. ..."
Reference:
1 . Sudhakar SK, Hong S, Raikov I, Publio R, Lang C, Close T, Guo D, Negrello M, De Schutter E (2017) Spatiotemporal network coding of physiological mossy fiber inputs by the cerebellar granular layer. PLoS Comput Biol 13:e1005754 [PubMed]
Citations  Citation Browser
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network;
Brain Region(s)/Organism: Cerebellum;
Cell Type(s): Cerebellum golgi cell;
Channel(s): I A; I Calcium; I K; I K,Ca; I Na,t; I h; I Na,p; I T low threshold;
Gap Junctions: Gap junctions;
Receptor(s): AMPA; NMDA; Gaba;
Gene(s):
Transmitter(s): Glutamate; Gaba;
Simulation Environment: NEURON;
Model Concept(s): Spatio-temporal Activity Patterns; Oscillations; Synchronization; Winner-take-all;
Implementer(s): Hong, Sungho [shhong at oist.jp]; Guo, Daqing [dqguo at uestc.edu.cn]; Raikov, Ivan [ivan.g.raikov at gmail.com]; Publio, Rodrigo [publio at oist.jp]; De Schutter, Erik [erik at oist.jp];
Search NeuronDB for information about:  AMPA; NMDA; Gaba; I Na,p; I Na,t; I T low threshold; I A; I K; I h; I K,Ca; I Calcium; Gaba; Glutamate;
State table
-----------

state 0

   *start* --> . line *eoi*    (rule 1)

   *default* : Error
   error : shift and goto state 6
   ID : shift and goto state 5
   NUM : shift and goto state 4
   LPAREN : shift and goto state 3
   NEWLINE : shift and goto state 2
   - : shift and goto state 1

state 1

   expr --> - . expr    (rule 11)

   *default* : Error
   ID : shift and goto state 10
   NUM : shift and goto state 4
   LPAREN : shift and goto state 3
   - : shift and goto state 1

state 2

   line --> NEWLINE .    (rule 4)

   *default* : reduce using rule 4

state 3

   expr --> LPAREN . expr RPAREN    (rule 15)

   *default* : Error
   ID : shift and goto state 10
   NUM : shift and goto state 4
   LPAREN : shift and goto state 3
   - : shift and goto state 1

state 4

   expr --> NUM .    (rule 14)

   *default* : reduce using rule 14

state 5

   assign --> ID . = expr    (rule 6)
   expr --> ID .    (rule 12)
   expr --> ID . LPAREN args RPAREN    (rule 13)

   *default* : reduce using rule 12
   = : shift and goto state 14
   LPAREN : shift and goto state 13

state 6

   line --> error . NEWLINE    (rule 5)

   *default* : Error
   NEWLINE : shift and goto state 15

state 7

   line --> expr . NEWLINE    (rule 3)
   expr --> expr . + expr    (rule 7)
   expr --> expr . - expr    (rule 8)
   expr --> expr . * expr    (rule 9)
   expr --> expr . / expr    (rule 10)

   *default* : Error
   NEWLINE : shift and goto state 20
   + : shift and goto state 19
   - : shift and goto state 18
   * : shift and goto state 17
   / : shift and goto state 16

state 8

   line --> assign . NEWLINE    (rule 2)

   *default* : Error
   NEWLINE : shift and goto state 21

state 9

   *start* --> line . *eoi*    (rule 1)

   *default* : Error
   *eoi* : shift and goto state 22

state 10

   expr --> ID .    (rule 12)
   expr --> ID . LPAREN args RPAREN    (rule 13)

   *default* : reduce using rule 12
   LPAREN : shift and goto state 13

state 11

   expr --> expr . + expr    (rule 7)
   expr --> expr . - expr    (rule 8)
   expr --> expr . * expr    (rule 9)
   expr --> expr . / expr    (rule 10)
   expr --> - expr .    (rule 11)

   *default* : reduce using rule 11
   / : shift and goto state 16
   * : shift and goto state 17

state 12

   expr --> expr . + expr    (rule 7)
   expr --> expr . - expr    (rule 8)
   expr --> expr . * expr    (rule 9)
   expr --> expr . / expr    (rule 10)
   expr --> LPAREN expr . RPAREN    (rule 15)

   *default* : Error
   RPAREN : shift and goto state 23
   + : shift and goto state 19
   - : shift and goto state 18
   * : shift and goto state 17
   / : shift and goto state 16

state 13

   expr --> ID LPAREN . args RPAREN    (rule 13)

   *default* : reduce using rule 16
   ID : shift and goto state 10
   NUM : shift and goto state 4
   LPAREN : shift and goto state 3
   STRING : shift and goto state 24
   - : shift and goto state 1

state 14

   assign --> ID = . expr    (rule 6)

   *default* : Error
   ID : shift and goto state 10
   NUM : shift and goto state 4
   LPAREN : shift and goto state 3
   - : shift and goto state 1

state 15

   line --> error NEWLINE .    (rule 5)

   *default* : reduce using rule 5

state 16

   expr --> expr / . expr    (rule 10)

   *default* : Error
   ID : shift and goto state 10
   NUM : shift and goto state 4
   LPAREN : shift and goto state 3
   - : shift and goto state 1

state 17

   expr --> expr * . expr    (rule 9)

   *default* : Error
   ID : shift and goto state 10
   NUM : shift and goto state 4
   LPAREN : shift and goto state 3
   - : shift and goto state 1

state 18

   expr --> expr - . expr    (rule 8)

   *default* : Error
   ID : shift and goto state 10
   NUM : shift and goto state 4
   LPAREN : shift and goto state 3
   - : shift and goto state 1

state 19

   expr --> expr + . expr    (rule 7)

   *default* : Error
   ID : shift and goto state 10
   NUM : shift and goto state 4
   LPAREN : shift and goto state 3
   - : shift and goto state 1

state 20

   line --> expr NEWLINE .    (rule 3)

   *default* : reduce using rule 3

state 21

   line --> assign NEWLINE .    (rule 2)

   *default* : reduce using rule 2

state 22

   *start* --> line *eoi* .    (rule 1)

   *default* : reduce using rule 1
   *eoi* : Accept input

state 23

   expr --> LPAREN expr RPAREN .    (rule 15)

   *default* : reduce using rule 15

state 24

   args --> STRING . arg-rest    (rule 18)

   *default* : reduce using rule 21
   COMMA : shift and goto state 32

state 25

   expr --> ID LPAREN args . RPAREN    (rule 13)

   *default* : Error
   RPAREN : shift and goto state 34

state 26

   expr --> expr . + expr    (rule 7)
   expr --> expr . - expr    (rule 8)
   expr --> expr . * expr    (rule 9)
   expr --> expr . / expr    (rule 10)
   args --> expr . arg-rest    (rule 17)

   *default* : reduce using rule 21
   COMMA : shift and goto state 32
   + : shift and goto state 19
   - : shift and goto state 18
   * : shift and goto state 17
   / : shift and goto state 16

state 27

   assign --> ID = expr .    (rule 6)
   expr --> expr . + expr    (rule 7)
   expr --> expr . - expr    (rule 8)
   expr --> expr . * expr    (rule 9)
   expr --> expr . / expr    (rule 10)

   *default* : reduce using rule 6
   + : shift and goto state 19
   - : shift and goto state 18
   * : shift and goto state 17
   / : shift and goto state 16

state 28

   expr --> expr . + expr    (rule 7)
   expr --> expr . - expr    (rule 8)
   expr --> expr . * expr    (rule 9)
   expr --> expr . / expr    (rule 10)
   expr --> expr / expr .    (rule 10)

   *default* : reduce using rule 10

state 29

   expr --> expr . + expr    (rule 7)
   expr --> expr . - expr    (rule 8)
   expr --> expr . * expr    (rule 9)
   expr --> expr * expr .    (rule 9)
   expr --> expr . / expr    (rule 10)

   *default* : reduce using rule 9

state 30

   expr --> expr . + expr    (rule 7)
   expr --> expr . - expr    (rule 8)
   expr --> expr - expr .    (rule 8)
   expr --> expr . * expr    (rule 9)
   expr --> expr . / expr    (rule 10)

   *default* : reduce using rule 8
   / : shift and goto state 16
   * : shift and goto state 17

state 31

   expr --> expr . + expr    (rule 7)
   expr --> expr + expr .    (rule 7)
   expr --> expr . - expr    (rule 8)
   expr --> expr . * expr    (rule 9)
   expr --> expr . / expr    (rule 10)

   *default* : reduce using rule 7
   / : shift and goto state 16
   * : shift and goto state 17

state 32

   arg-rest --> COMMA . expr arg-rest    (rule 19)
   arg-rest --> COMMA . STRING arg-rest    (rule 20)

   *default* : Error
   ID : shift and goto state 10
   NUM : shift and goto state 4
   LPAREN : shift and goto state 3
   STRING : shift and goto state 36
   - : shift and goto state 1

state 33

   args --> STRING arg-rest .    (rule 18)

   *default* : reduce using rule 18

state 34

   expr --> ID LPAREN args RPAREN .    (rule 13)

   *default* : reduce using rule 13

state 35

   args --> expr arg-rest .    (rule 17)

   *default* : reduce using rule 17

state 36

   arg-rest --> COMMA STRING . arg-rest    (rule 20)

   *default* : reduce using rule 21
   COMMA : shift and goto state 32

state 37

   expr --> expr . + expr    (rule 7)
   expr --> expr . - expr    (rule 8)
   expr --> expr . * expr    (rule 9)
   expr --> expr . / expr    (rule 10)
   arg-rest --> COMMA expr . arg-rest    (rule 19)

   *default* : reduce using rule 21
   COMMA : shift and goto state 32
   + : shift and goto state 19
   - : shift and goto state 18
   * : shift and goto state 17
   / : shift and goto state 16

state 38

   arg-rest --> COMMA STRING arg-rest .    (rule 20)

   *default* : reduce using rule 20

state 39

   arg-rest --> COMMA expr arg-rest .    (rule 19)

   *default* : reduce using rule 19