//genesis - Purkinje cell M9 genesis2 script
/* Copyright E. De Schutter (Caltech and BBF-UIA) */
/**********************************************************************
** Set of currents developed for rat cerebellum Purkinje neuron by
** and dendritic spine prototypes.
** This version just loads the data from a file: this is about 8 times
** faster than computing the equations
** E. De Schutter, Caltech, 1991-1992
**********************************************************************/
/* Reference:
** E. De Schutter and J.M. Bower: An active membrane model of the
** cerebellar Purkinje cell. I. Simulation of current clamps in slice.
** Journal of Neurophysiology 71: 375-400 (1994).
** http://www.bbf.uia.ac.be/TNB/TNB_pub8.html
** Consult this reference for sources of equations and experimental data.
*/
/* The data on which these currents are based were collected at room
** temperature (anything in the range 20 to 25C). All rate factors were
** adapted for body temperature (37C), assuming a Q10 of about 3;
** in practice all rate factors were multiplied by a factor of 5 */
// CONSTANTS
/* should be defined by calling routine (all correctly scaled):
** ENa, GNa
** ECa, GCa
** EK, GK
** Eh, Gh */
int include_Purk_chanload
if ( {include_Purk_chanload} == 0 )
include_Purk_chanload = 1
/*********************************************************************
** Central channel creation routine
*********************************************************************/
/* Make tabchannels, and load from table */
function make_chan(chan, Ec, Gc, Xp, XAA, XAB, XAC, XAD, XAF, XBA, XBB, \
XBC, XBD, XBF, Yp, YAA, YAB, YAC, YAD, YAF, YBA, YBB, YBC, YBD, YBF \
, Zp, ZAA, ZAB, ZAC, ZAD, ZAF, ZBA, ZBB, ZBC, ZBD, ZBF)
str chan
int Xp, Yp, Zp
float Ec, Gc
float XAA, XAB, XAC, XAD, XAF, XBA, XBB, XBC, XBD, XBF
float YAA, YAB, YAC, YAD, YAF, YBA, YBB, YBC, YBD, YBF
float ZAA, ZAB, ZAC, ZAD, ZAF, ZBA, ZBB, ZBC, ZBD, ZBF
if ({exists {chan}})
call {chan} TABREAD {chan}.tab
return
end
create tabchannel {chan}
setfield {chan} Ek {Ec} Gbar {Gc} Ik 0 Gk 0 Xpower {Xp} Ypower {Yp} \
Zpower {Zp}
if (Xp > 0)
call {chan} TABCREATE X {tab_xfills+1} {tab_xmin} {tab_xmax}
end
if (Yp > 0)
call {chan} TABCREATE Y {tab_xfills+1} {tab_xmin} {tab_xmax}
end
if (Zp != 0)
call {chan} TABCREATE Z {tab_xfills+1} {CCaI} {Ca_tab_max}
end
call {chan} TABREAD {chan}.tab
end
/******************************************************************* \
**
** The current equations themselves
*********************************************************************/
function make_Purkinje_chans
echo loading Purkinje channel library....
/* Equations specific to the Purkinje cell, made by EDS */
/* Fast Na current, eq#3a */
make_chan Purk_NaF {ENa} {GNa} 3 35.0e3 0.0 0.0 0.005 -10.0e-3 7.0e3 \
0.0 0.0 0.065 20.0e-3 1 0.225e3 0.0 1.0 0.080 10.0e-3 7.5e3 0.0 \
0.0 -0.003 -18.0e-3 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
/* Persistent Na current, eq#2b */
make_chan Purk_NaP {ENa} {GNa} 3 200.0e3 0.0 1.0 -0.018 -16.0e-3 \
25.00e3 0.0 1.0 0.058 8.0e-3 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 \
0.0 0.0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
/* P type Ca current, eq#1e */
make_chan Purk_CaP {ECa} {GCa} 1 8.50e3 0.0 1.0 -0.0080 -12.5e-3 \
35.0e3 0.0 1.0 0.074 14.5e-3 1 0.0015e3 0.0 1.0 0.029 8.0e-3 \
0.0055e3 0.0 1.0 0.023 -8.0e-3 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 \
0.0 0.0
/* T type Ca current, eq#2 */
make_chan Purk_CaT {ECa} {GCa} 1 2.60e3 0.0 1.0 0.021 -8.0e-3 \
0.180e3 0.0 1.0 0.040 4.0e-3 1 0.0025e3 0.0 1.0 0.040 8.0e-3 \
0.190e3 0.0 1.0 0.050 -10.0e-3 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 \
0.0 0.0
/* A type K current, eq#2b */
make_chan Purk_KA {EK} {GK} 4 1.40e3 0.0 1.0 0.027 -12.0e-3 0.490e3 \
0.0 1.0 0.030 4.0e-3 1 0.0175e3 0.0 1.0 0.050 8.0e-3 1.30e3 0.0 \
1.0 0.013 -10.0e-3 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
/* non-inactivating BK-type Ca-dependent K current eq 3 (Gruol K1)
/* scaled for units: V, sec, mM */
make_chan Purk_KC {EK} {GK} 1 7.5e3 0.0 0.0 0.0 1.0e12 0.110e3 0.0 \
0.0 -0.035 14.9e-3 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2 \
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
/* non-inactivating Ca-dependent K current eq 1 (Gruol K2) */
/* scaled for units: V, sec, mM */
make_chan Purk_K2 {EK} {GK} 1 25.0e3 0.0 0.0 0.0 1.0e12 0.075e3 0.0 \
0.0 0.025 6.0e-3 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2 \
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
/* Equations from the literature */
/* delayed rectifier type K current eq1
** Refs: Yamada (his equations are also for 22C) */
if (!{exists Purk_Kdr})
create tabchannel Purk_Kdr
setfield Purk_Kdr Ek {EK} Gbar {GK} Ik 0 Gk 0 Xpower 2 \
Ypower 1 Zpower 0
call Purk_Kdr TABCREATE X {tab_xfills+1} {tab_xmin} {tab_xmax}
call Purk_Kdr TABCREATE Y {tab_xfills+1} {tab_xmin} {tab_xmax}
end
call Purk_Kdr TABREAD Purk_Kdr.tab
/* non-inactivating (muscarinic) type K current, eq#2
** eq#2: corrected typo in Yamada equation for tau: 20 instead of 40
** Refs: Yamada (his equations are also for 22C) */
if (!{exists Purk_KM})
create tabchannel Purk_KM
setfield Purk_KM Ek {EK} Gbar {GK} Ik 0 Gk 0 Xpower 1 \
Ypower 0 Zpower 0
call Purk_KM TABCREATE X {tab_xfills+1} {tab_xmin} {tab_xmax}
end
call Purk_KM TABREAD Purk_KM.tab
/* Anomalous rectifier eq#2: */
if (!{exists Purk_h1})
create tabchannel Purk_h1
setfield Purk_h1 Ek {Eh} Gbar {Gh} Ik 0 Gk 0 Xpower 1 \
Ypower 0 Zpower 0
call Purk_h1 TABCREATE X {tab_xfills+1} {tab_xmin} {tab_xmax}
create tabchannel Purk_h2
setfield Purk_h2 Ek {Eh} Gbar {Gh} Ik 0 Gk 0 Xpower 1 \
Ypower 0 Zpower 0
call Purk_h2 TABCREATE X {tab_xfills+1} {tab_xmin} {tab_xmax}
end
call Purk_h1 TABREAD Purk_h1.tab
call Purk_h2 TABREAD Purk_h2.tab
end
/*********************************************************************/
end
Simulation Platform