prcs: Producing diffs from 0.39 to ActivePassive.2.
Index: 0.39/Purk2M9s.p.config
--- 0.39/Purk2M9s.p.config Mon, 25 Jan 1999 16:30:02 +0100 hugo (purkinje/5_Purk2M9s.p 1.1 664)
+++ ActivePassive.2/Purk2M9s.p.config Wed, 03 Nov 1999 15:25:22 +0100 hugo (purkinje/5_Purk2M9s.p 1.2 664)
@@ -3,3 +3,4 @@
iSpines 1474
xCellPath /Purkinje/soma[TYPE=compartment],/Purkinje/main[][TYPE=compartment],/Purkinje/b#[][TYPE=compartment]
xCellElements 1600
+condDescr Purk2M9s.p.condDescr
Index: 0.39/psmall.p.config
--- 0.39/psmall.p.config Mon, 25 Jan 1999 16:30:02 +0100 hugo (purkinje/7_psmall.p.c 1.1 664)
+++ ActivePassive.2/psmall.p.config Wed, 03 Nov 1999 15:25:22 +0100 hugo (purkinje/7_psmall.p.c 1.2 664)
@@ -3,3 +3,4 @@
iSpines 142
xCellPath /Purkinje/soma[TYPE=compartment],/Purkinje/main[][TYPE=compartment],/Purkinje/b#[][TYPE=compartment]
xCellElements 176
+condDescr psmall.p.condDescr
Index: 0.39/settings.g
--- 0.39/settings.g Sat, 30 Oct 1999 01:44:13 +0200 hugo (purkinje/23_settings.g 1.8.2.2 644)
+++ ActivePassive.2/settings.g Wed, 03 Nov 1999 15:25:22 +0100 hugo (purkinje/23_settings.g 1.8.2.4 644)
@@ -36,6 +36,137 @@
///
+/// SH: SettingsActivePassive
+///
+/// PA: model.: 0 : passive model
+/// 1 : active model
+///
+/// DE: Switch active/passive model
+/// Uses tabchan file giving maximal conductances that is registered in the
+/// config element.
+/// Depends on the fact that the number of tabchan element in the
+/// descriptor file is the same as the number of tabchan elements in the
+/// cell in {cellpath}
+///
+
+function SettingsActivePassive(model)
+
+int model
+
+ //- give diag's
+
+ echo "Updating tabchannels..." -n
+
+ //- if going to passive model
+
+ if ( model == 0)
+
+ //- loop over all tabchannels
+
+ str tabchan
+
+ foreach tabchan ( { el {cellpath}/##[][TYPE=tabchannel] } )
+
+ //- HGET values from solver
+
+ call solve HGET {tabchan}
+
+ //- set maximal conductance to zero
+
+ setfield {tabchan} Gbar 0.0
+
+ //- HPUT the value into the solver
+
+ call solve HPUT {tabchan}
+ end
+
+ //- if going to active model
+
+ elif ( model == 1)
+
+ //v line from file
+
+ str argline
+
+ //- get filename
+
+ str filename = {getfield /config condDescr}
+
+ //- open the tabchan max conductance file
+
+ openfile {filename} r
+
+ //- read count from file
+
+ int iFileCount = {readfile {filename}}
+
+ //- loop over all tabchannels
+
+ int iCount = 0
+
+ str tabchan
+
+ foreach tabchan ( { el {cellpath}/##[][TYPE=tabchannel] } )
+
+ //- HGET values from solver
+
+ call solve HGET {tabchan}
+
+ //- read line with element field
+
+ argline = {readfile {filename} -line}
+
+ //- set read field of read element to read value
+
+ setfield \
+ {getarg {arglist {argline}} -arg 1} \
+ {getarg {arglist {argline}} -arg 2} \
+ {getarg {arglist {argline}} -arg 3}
+
+ //- HPUT the value into the solver
+
+ call solve HPUT {tabchan}
+
+ //- increment count
+
+ iCount = {iCount + 1}
+ end
+
+ //- close the tabchan file
+
+ closefile {filename}
+
+ //- sanity check on actual count and file count
+
+ //t this can still fail if the number of channels in the file
+ //t is less than the number of channels in the cell.
+ //t genesis doesn't provide a eof check...
+
+ if ( {iFileCount} != {iCount} )
+
+ echo "Warning : Number of channels in channel" -n
+ echo "description file is different from"
+ echo "Warning : number of channels in simulated cell."
+ echo "Warning : read("{iCount}"), " -n
+ echo "file gives ("{iFileCount}")."
+ end
+
+ //- else somebody messed up
+
+ else
+
+ //- give diag's
+
+ echo "Somebody messed up the code"
+ end
+
+ //- end diag's
+
+ echo "done"
+end
+
+
+///
/// SH: SettingsBasket
///
/// DE: display and handle settings for basket firing
@@ -1709,6 +1840,60 @@
//- create the form for vivo settings
SettingsVivoCreate /settings/
+end
+
+
+///
+/// SH: UpdateTabChanMaxG
+///
+/// PA: filename.: file to write conductance table to
+///
+/// DE: Update tabchans maximal conductances
+/// Write maximal conductances for all tabchans in {cellpath} to file
+/// given by {filename}, preceded by the element name and Gbar. Order of
+/// writing is determined by genesis expanding a wildcard argument.
+///
+/// NO: This function should modified to be a one parameter general purpose
+/// routine.
+///
+
+function UpdateTabChanMaxG(filename)
+
+str filename
+
+ //- open the file for writing
+
+ openfile {filename} w
+
+ //- count tabchans
+
+ int iCount = 0
+
+ str tabchan
+
+ foreach tabchan ( { el /Purkinje/##[][TYPE=tabchannel] } )
+
+ iCount = {iCount + 1}
+ end
+
+ //- write count to file
+
+ writefile {filename} {iCount}
+
+ //- loop over all tabchans
+
+ str tabchan
+
+ foreach tabchan ( { el {cellpath}/##[][TYPE=tabchannel] } )
+
+ //- write line to file
+
+ writefile {filename} {tabchan}" Gbar "{getfield {tabchan} Gbar}
+ end
+
+ //- close file
+
+ closefile {filename}
end
Index: 0.39/makeconfig.g
--- 0.39/makeconfig.g Fri, 26 Feb 1999 22:28:35 +0100 hugo (purkinje/27_makeconfig 1.3 644)
+++ ActivePassive.2/makeconfig.g Wed, 03 Nov 1999 15:25:22 +0100 hugo (purkinje/27_makeconfig 1.3.1.1 644)
@@ -56,6 +56,10 @@
int iChanMode = 5
+//- set default model : active model
+
+int iActivePassive = 1
+
//- set default mode : in vitro
int iVVMode = 0
Index: 0.39/control.g
--- 0.39/control.g Fri, 29 Oct 1999 21:02:10 +0200 hugo (purkinje/31_control.g 1.14.1.1.2.1 664)
+++ ActivePassive.2/control.g Wed, 03 Nov 1999 15:25:22 +0100 hugo (purkinje/31_control.g 1.14.1.1.2.3 664)
@@ -352,6 +352,7 @@
///
/// PA: mode..: 1 change in vivo / vitro mode
/// 2 change in current injection
+/// 3 change active - passive model
///
/// DE: toggle the simulation mode
/// reflects changes in the toggle buttons
@@ -447,13 +448,13 @@
echo "Switching off current injection"
- //- switch off current mode
+ //- remember we switched off current mode
iCurrentMode = 0
//- switch off pulse generator
- SettingsIClampSwitch
+ SettingsIClampSwitch 0
//- else (we are not in current injection mode)
@@ -463,13 +464,60 @@
echo "Switching on current injection"
- //- switch on current mode
+ //- remember we switched on current mode
iCurrentMode = 1
//- switch on pulse generator
- SettingsIClampSwitch
+ SettingsIClampSwitch 1
+ end
+
+ //- else if we have a change in active/passive model
+
+ elif (mode == 3)
+
+ //- if we are in current injection mode
+
+ if (iActivePassive == 1)
+
+ //- give a discriptive message
+
+ echo "Switching to passive model"
+
+ //- remember we switched to passive model
+
+ iActivePassive = 0
+
+ //- switch to passive model
+
+ SettingsActivePassive 0
+
+ //- update label
+
+ setfield /control/activePassiveLabel \
+ title "Passive"
+
+ //- else (we are not in current injection mode)
+
+ else
+
+ //- give a discriptive message
+
+ echo "Switching to active model"
+
+ //- remember we switched to active model
+
+ iActivePassive = 1
+
+ //- switch to active model
+
+ SettingsActivePassive 1
+
+ //- update label
+
+ setfield /control/activePassiveLabel \
+ title "Active"
end
//- else no mode is possible
@@ -573,7 +621,7 @@
//- create form for control panel
- create xform /control [0, 490, 300, 340]
+ create xform /control [0, 490, 300, 360]
//- make it the current element
@@ -670,9 +718,33 @@
create xlabel mode \
-label "Simulation mode"
+ //- create the active/passive button
+
+ create xbutton activePassive \
+ -wgeom 30% \
+ -title "Toggle" \
+ -script "ToggleMode 3"
+
+ //- create the active/passive label
+
+ create xlabel activePassiveLabel \
+ -xgeom 0:last.right \
+ -ygeom 2:mode \
+ -wgeom 40% \
+ -title "Active"
+
+ //- create a no active/passive settings label
+
+ create xlabel noactivePassiveSettings \
+ -xgeom 0:activePassiveLabel \
+ -ygeom 2:mode \
+ -wgeom 30% \
+ -title "No settings"
+
//- create the vivo/vitro button
create xbutton vivoVitro \
+ -ygeom 0:activePassive \
-wgeom 30% \
-title "Toggle" \
-script "ToggleMode 1"
@@ -681,7 +753,7 @@
create xlabel vivoVitroLabel \
-xgeom 0:last.right \
- -ygeom 2:mode \
+ -ygeom 2:activePassive \
-wgeom 40% \
-title "In vitro"
@@ -689,7 +761,7 @@
create xbutton vivoSettings \
-xgeom 0:last.right \
- -ygeom 0:mode \
+ -ygeom 0:activePassive \
-wgeom 30% \
-title "Settings" \
-script "SettingsVivo"
@@ -702,7 +774,7 @@
create xlabel noVitroSettings \
-xgeom 0:vivoVitroLabel \
- -ygeom 2:mode \
+ -ygeom 2:activePassive \
-wgeom 30% \
-title "No settings"
Index: 0.39/config.g
--- 0.39/config.g Fri, 29 Oct 1999 21:02:10 +0200 hugo (purkinje/32_config.g 1.7 644)
+++ ActivePassive.2/config.g Wed, 03 Nov 1999 15:25:22 +0100 hugo (purkinje/32_config.g 1.8 644)
@@ -30,6 +30,9 @@
include_config = 1
+//include settings.g
+
+
///
/// SH: ConfigFilename
///
@@ -143,7 +146,8 @@
//{
//1 first declare locals for all config settings
//2 determine the value for all config settings
- //3 write all locals to config file
+ //3 resolve dependencies
+ //4 write all locals to config file
//}
//- create a filename for the config file
@@ -174,6 +178,10 @@
int xCellElements = 0
+ //v file with tabchan maximal conductances
+
+ str condDescr
+
//2 determine the value for all config settings
//- determine type of host
@@ -216,7 +224,21 @@
end
- //3 write all locals to config file
+ //- set the conductance file
+
+ condDescr = { {cell} @ ".condDescr" }
+
+ //3 resolve dependencies
+
+ //- give diagnostics
+
+ echo "Creating tabchannel table ("{condDescr}")"
+
+ //- update tabchans maximal conductances
+
+ callfunc UpdateTabChanMaxG {condDescr}
+
+ //4 write all locals to config file
//- open config file for output
@@ -242,6 +264,10 @@
writefile {filename} "xCellElements" {xCellElements}
+ //- write tabchan filename
+
+ writefile {filename} "condDescr" {condDescr}
+
//- close config file
closefile {filename}
@@ -414,6 +440,10 @@
int xCellElements
+ //v file with tabchan maximal conductances
+
+ str condDescr
+
//2 read all locals from config file
//- open the config file
@@ -484,6 +514,14 @@
xCellElements = {getarg {arglist {argline}} -arg 2}
+ //- read line with conductances
+
+ argline = {readfile {filename} -line}
+
+ //- set filename for conductances
+
+ condDescr = {getarg {arglist {argline}} -arg 2}
+
//3 set the value for all config settings
//- create a configuration element
@@ -515,6 +553,11 @@
addfield /config \
xCellElements -description "Number of elements in xcell"
+ //- add a field for max conductances of tabchans
+
+ addfield /config \
+ condDescr -description "Filename with tabchan max conductance"
+
//- set the config values
setfield /config \
@@ -522,7 +565,8 @@
hostType {hostType} \
iSpines {iSpines} \
xCellPath {xCellPath} \
- xCellElements {xCellElements}
+ xCellElements {xCellElements} \
+ condDescr {condDescr}
//- close the config file
Index: 0.39/TUTORIAL.g
--- 0.39/TUTORIAL.g Thu, 01 Apr 1999 16:49:42 +0200 hugo (purkinje/36_TUTORIAL.g 1.1.1.3.1.6 640)
+++ ActivePassive.2/TUTORIAL.g Tue, 02 Nov 1999 23:29:09 +0100 hugo (purkinje/36_TUTORIAL.g 1.1.1.3.1.6.2.1 640)
@@ -55,6 +55,10 @@
int iChanMode = 5
+//- set default model : active model
+
+int iActivePassive = 1
+
//- set default mode : in vitro
int iVVMode = 0
Simulation Platform