INTRO
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Infer full compartmental model given only access to the voltage in the
compartments. This code is released in conjunction with the paper
Huys QJM, Ahrens M and Paninski L (2006): Efficient estimation of
detailed single-neurone models
and can be downloaded from
http://www.gatsby.ucl.ac.uk/~qhuys/code.html
The paper can be downloaded from
http://www.gatsby.ucl.ac.uk/~qhuys/pub/hap06.pdf
Copyright Quentin Huys 2006
qhuys@gatsby.ucl.ac.uk
HOW TO
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To use the code, unzip it, eg on a linux machine type
gunzip hap06_code.gz
Which will create a directory with all the files.
From within Matlab, change to that directory by typing eg
cd hap06_code
Edit the file PARAM.M to change any parameters you want, like the number of
compartments in the cell, the size of each compartment, the amount of noise etc.
You should not have to edit any of the other files.
To run the inference, simply type
main
and hit ENTER. Enjoy.
BUGS
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I don't know of any bugs at the moment, but please do let me know if you find
any (qhuys@gatsby.ucl.ac.uk)
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