// Single compartment neuron in NEURON
// K.Stiefel, Salk, 2004

// NEURON standard files, soma

load_file("stdgui.hoc")
load_file("nrngui.hoc")

nrnmainmenu()

load_file("PyMainen.hoc")

// changes in Mainen's parameters

forsec dendritic {
		gbar_km	= 2
		g_pas	= 2e-5
		e_pas = -60		
		gbar_ca= .1				
		gbar_na = 20
		gbar_kca = 3	
//		nseg = int(L/8)+1
		}
	
soma { 		gkv = 100 }

objref spikesin[4], input, spikesout, nix
objref spikesouttimes, synapse[4], Iinject

soma synapse[0] = new ExpSyn(.5)
a2_1211 synapse[1] = new ExpSyn(.5)
// a2_121121 synapse[2] = new ExpSyn(.5)
// a2_1211212
a2_12112122 synapse[2] = new ExpSyn(.5)
a3_12122221 synapse[3] = new ExpSyn(.5)
for y = 0, 3 { synapse[y].tau=0.01 }

input = new NetStim(.5)
input.number=1
input.start=10000

for w = 0, 3 {spikesin[w] = new NetCon(input, synapse[w], 0.5, 0, 0 ) }
spikesin[0].weight = 0
spikesin[1].weight = 0
spikesin[2].weight = 0
spikesin[3].weight = 0

soma spikesout = new NetCon(&v(.5), nix, 0, 0, 0)// Output spike train
spikesouttimes = new Vector()
spikesout.record(spikesouttimes)

// load_file("single1.ses")// display

// comment out from here on
// to get the theta neuron only 
// without PRC determination
// -----------------------------
load_file("displayshape.hoc")
load_file("makeIF.hoc") // current vs firing rate curve
load_file("PRC.hoc") // determine phase reset curves
// load_file("synproxy_cch.hoc") 
// load_file("synproxy_sweeps.hoc")
// load_file("fig5A.hoc") // uniform gm change, 3 synapse locations, PRC
// load_file("fig5C.hoc") // gm change in a spot, 3 synapse locations, PRCs
// load_file("surface.hoc")