//FScell.p cell parameter file
// co-ordinate mode
*relative
*cartesian
*asymmetric
*lambda_warn
// specifying constants, SI units
// Plenz D, Aertsen A. Neuroscience. 1996 Feb;70(4):861-91
// J Neurosci 1994,14:4613-4638 says Cm=0.007-0.008, Rm 120-200kOhm*cm^2 ???
//*set_compt_param RM 0.95 //ohm*m^2 =10 kohm*cm^2
*set_compt_param RM 2 //ohm*m^2 //Avrama decreased from 3 to 2 fix timeconstants
//*set_compt_param CM 0.01 //farads/m^2
*set_compt_param CM 0.007 //farads/m^2
//*set_compt_param RA 2 //ohm*m = 100 ohm*cm
*set_compt_param RA 3 //ohm*m
*set_compt_param EREST_ACT -0.063 //?? relative to zero??
// ELEAK is -0.063 without dopamine and -0.061 with dopamine
*set_compt_param ELEAK -0.063 // resting, Volts, was -65mV before
*start_cell /library/tert_dend
// x, y, z or x=length if y and z=0
tert_dend none 30 0 0 0.5
tert_dend2 . 30 0 0 0.5
tert_dend3 . 30 0 0 0.5
tert_dend4 . 30 0 0 0.5
tert_dend5 . 30 0 0 0.5
tert_dend6 . 30 0 0 0.5
tert_dend7 . 30 0 0 0.5
tert_dend8 . 30 0 0 0.5
// make distal dend with 8 compartments a prototype
*makeproto /library/tert_dend
*start_cell /library/sec_dend
sec_dend none 37 0 0 0.75 A_channel 00
sec_dend2 . 37 0 0 0.75 A_channel 00
sec_dend3 . 37 0 0 0.75 A_channel 00
sec_dend4 . 37 0 0 0.75 A_channel 00
*makeproto /library/sec_dend
*start_cell /library/prim_dend
prim_dend none 45 0 0 1 A_channel 90 Na_channel 0 K3132_channel 0
prim_dend2 . 45 0 0 1 A_channel 90 Na_channel 0 K3132_channel 0
*makeproto /library/prim_dend
*start_cell
soma none 20 0 0 15 Na_channel 1149 K3132_channel 582 A_channel 333 K13_channel 1.46
*compt /library/prim_dend
primdend1 soma 45 0 0 1
primdend2 soma 45 0 0 1
primdend3 soma 45 0 0 1
*compt /library/sec_dend
secdend1 primdend1/prim_dend2 37 0 0 0.75
secdend2 primdend1/prim_dend2 37 0 0 0.75
secdend3 primdend2/prim_dend2 37 0 0 0.75
secdend4 primdend2/prim_dend2 37 0 0 0.75
secdend5 primdend3/prim_dend2 37 0 0 0.75
secdend6 primdend3/prim_dend2 37 0 0 0.75
*compt /library/tert_dend
tertdend1 secdend1/sec_dend4 30 0 0 0.5
tertdend2 secdend1/sec_dend4 30 0 0 0.5
tertdend3 secdend2/sec_dend4 30 0 0 0.5
tertdend4 secdend2/sec_dend4 30 0 0 0.5
tertdend5 secdend3/sec_dend4 30 0 0 0.5
tertdend6 secdend3/sec_dend4 30 0 0 0.5
tertdend7 secdend4/sec_dend4 30 0 0 0.5
tertdend8 secdend4/sec_dend4 30 0 0 0.5
tertdend9 secdend5/sec_dend4 30 0 0 0.5
tertdend10 secdend5/sec_dend4 30 0 0 0.5
tertdend11 secdend6/sec_dend4 30 0 0 0.5
tertdend12 secdend6/sec_dend4 30 0 0 0.5
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