//genesis
//nmda_channel.g
function make_NMDA_channel (chanpath, Ek, KMg, tau2, gmax, ghk)
str chanpath //what you want the channel to be called (full path)
float KMg, tau2, gmax //parameters that differ between NR2A, B, C and D subunits
float Ek
int ghk
float tau1 = (4.4624e-3)/2 // DE Chapman et al 2003, table 1 (12.13/e=5.63ms)
float CMg = 1 // [Mg] in mM
float eta = 1/3.57 // per mM
float gamma = 62 // per Volt
echo "XXXXXXXXXXXXXXX make_NMDA_channel XXXXXXXXXXXXXXXX"
echo "chanpath = "{chanpath}
echo "caBuffer = "{Ek}
echo "KMg = "{KMg}
echo "tau2 = "{tau2}
echo "gmax = "{gmax}
echo "XXXXXXXXXXXXXXX make_NMDA_channel XXXXXXXXXXXXXXXX"
create synchan {chanpath}
setfield {chanpath} \
Ek {Ek} \
tau1 {tau1} \
tau2 {tau2} \
gmax {gmax/2}
//the kinetics of the magnesium block is different for different subunits.
// NR2A and B are about the same, but C and D are much less affected by the block.
//these numbers were used because the made the magnesium block curve fit the figures by Moyner et al (1994 figure 7) best by eye.
create Mg_block {chanpath}/block
setfield {chanpath}/block CMg {CMg}
setfield {chanpath}/block KMg_B {1.0/{gamma}}
setfield {chanpath}/block KMg_A {KMg}
addmsg {chanpath} {chanpath}/block CHANNEL Gk Ek
if (ghk==1)
create ghk {chanPath}/GHK
setfield {chanPath}/GHK Cout 2 // Carter & Sabatini 2004 uses 2mM, Wolf 5mM
setfield {chanPath}/GHK valency 2.0
setfield {chanPath}/GHK T {temperature}
addmsg {compPath}/{chanpath}/block {chanPath}/GHK PERMEABILITY Gk
end
end
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