Advanced search
User account
Login
Register
Find models by
Model name
First author
Each author
Find models for
Brain region
Concept
Find models of
Realistic Microcircuits
Connectionist Networks
A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
 
Download zip file
Help downloading and running models
Model Information
Model File
Accession:
168866
A spatial model of the intermediate superior colliculus. It reproduces the collicular saccade-generating output profile from NMDA receptor-driven burst neurons, shaped by integrative inhibitory feedback from spreading buildup neuron activity. The model is consistent with the view that collicular activity directly shapes the temporal profile of saccadic eye movements. We use the Adaptive exponential integrate and fire neuron model, augmented with an NMDA-like membrane potential-dependent receptor. In addition, we use a synthetic spike integrator model as a stand-in for a spike-integrator circuit in the reticular formation. NOTE: We use a couple of custom neuron models, so the supplied model file includes an entire version of NEST. I also include a patch that applies to a clean version of the simulator (see the doc/README).
Reference:
1 .
Morén J, Shibata T, Doya K (2013) The mechanism of saccade motor pattern generation investigated by a large-scale spiking neuron model of the superior colliculus.
PLoS One
8
:e57134
[
PubMed
]
Citations
Citation Browser
Model Information
(Click on a link to find other models with that property)
Model Type:
Realistic Network;
Connectionist Network;
Brain Region(s)/Organism:
Superior colliculus;
Cell Type(s):
Abstract integrate-and-fire adaptive exponential (AdEx) neuron;
Channel(s):
Gap Junctions:
Receptor(s):
NMDA;
Gene(s):
Transmitter(s):
Simulation Environment:
NEST;
Python;
Model Concept(s):
Activity Patterns;
Bursting;
Spatio-temporal Activity Patterns;
Action Selection/Decision Making;
Implementer(s):
Search NeuronDB
for information about:
NMDA
;
/
NEST-SCModel
nest-2.2.2
autom4te.cache
build
conngen
doc
examples
extras
lib
libltdl
libnestutil
librandom
models
nest
nestkernel
precise
pynest
sli
testsuite
topology
README
acinclude.m4
aclocal.m4
bootstrap.sh
config.guess
*
Other models using config.guess:
A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
config.sub
*
Other models using config.sub:
A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
configure
configure.ac
*
Other models using configure.ac:
A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
configure.ac.in
*
Other models using configure.ac.in:
A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
depcomp
*
Other models using depcomp:
A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
INSTALL
install-help.log
install-sh
*
Other models using install-sh:
A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
LICENSE
*
Other models using LICENSE:
A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
Neuromorphic muscle spindle model (Vannucci et al 2017)
ltmain.sh
*
Other models using ltmain.sh:
A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
Makefile.am
Makefile.in
missing
*
Other models using missing:
A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
NEWS
File not selected
<- Select file from this column.