MicrocircuitDB: Pleiotropic effects of SCZ-associated genes (Mäki-Marttunen et al. 2017)

Pleiotropic effects of SCZ-associated genes (Mäki-Marttunen et al. 2017)

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Accession:187615

Python and MATLAB scripts for studying the dual effects of SCZ-related genes on layer 5 pyramidal cell firing and sinoatrial node cell pacemaking properties. The study is based on two L5PC models (Hay et al. 2011, Almog & Korngreen 2014) and SANC models (Kharche et al. 2011, Severi et al. 2012).
Reference:
1 . Mäki-Marttunen T, Lines GT, Edwards AG, Tveito A, Dale AM, Einevoll GT, Andreassen OA (2017) Pleiotropic effects of schizophrenia-associated genetic variants in neuron firing and cardiac pacemaking revealed by computational modeling. Transl Psychiatry 7:5 [PubMed]

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Model Information (Click on a link to find other models with that property)

Model Type:	Neuron or other electrically excitable cell;
Brain Region(s)/Organism:
Cell Type(s):	Neocortex L5/6 pyramidal GLU cell; Cardiac atrial cell;
Channel(s):	I Na,p; I Na,t; I L high threshold; I T low threshold; I A; I K; I M; I h; I K,Ca; I Sodium; I Calcium; I Potassium; I A, slow; Na/Ca exchanger; I_SERCA; Na/K pump; Kir;
Gap Junctions:
Receptor(s):
Gene(s):	Nav1.1 SCN1A; Cav3.3 CACNA1I; Cav1.3 CACNA1D; Cav1.2 CACNA1C;
Transmitter(s):
Simulation Environment:	NEURON; MATLAB; Python;
Model Concept(s):	Schizophrenia;
Implementer(s):	Maki-Marttunen, Tuomo [tuomomm at uio.no];

Search NeuronDB for information about: Neocortex L5/6 pyramidal GLU cell; I Na,p; I Na,t; I L high threshold; I T low threshold; I A; I K; I M; I h; I K,Ca; I Sodium; I Calcium; I Potassium; I A, slow; Na/Ca exchanger; I_SERCA; Na/K pump; Kir;

Download the displayed file

calcifcurves.py

calcsteadystate.py

fig1_curves.mat

fig2_curves.mat

findDCshortthreshold.py

mutation_stuff.py

for i in 0 47 65 77 83 89 93 102 105
do
  date
  echo "python calcifcurves.py $i"
  python calcifcurves.py $i
  date
  echo "python findDCshortthreshold.py $i"
  python findDCshortthreshold.py $i
  date
  echo "python calcsteadystate.py $i"
  python calcsteadystate.py $i
  date
done