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5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
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Accession:
226812
This is a 5-neuron model of neocortex, containing one tufted layer-5 pyramidal cell, two non-tufted pyramidal cells, and two inhibitory interneurons. It was used to reproduce extracellular spike shapes in a study comparing algorithms for spike sorting and electrode selection. The neuron models are adapted from Dyhrfjeld-Johnsen et al. (2005).
Reference:
1 .
Van Dijck G, Seidl K, Paul O, Ruther P, Van Hulle MM, Maex R (2012) Enhancing the yield of high-density electrode arrays through automated electrode selection.
Int J Neural Syst
22
:1-19
[
PubMed
]
Citations
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Model Information
(Click on a link to find other models with that property)
Model Type:
Extracellular;
Neuron or other electrically excitable cell;
Realistic Network;
Brain Region(s)/Organism:
Cell Type(s):
Neocortex U1 L5B pyramidal pyramidal tract GLU cell;
Neocortex U1 L2/6 pyramidal intratelencephalic GLU cell;
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment:
GENESIS;
Model Concept(s):
Implementer(s):
Maex, Reinoud [reinoud at bbf.uia.ac.be];
Search NeuronDB
for information about:
Neocortex U1 L5B pyramidal pyramidal tract GLU cell
;
Neocortex U1 L2/6 pyramidal intratelencephalic GLU cell
;
/
Five-neuron-neocortex
L5P37C-onlybasal
channels
README
Axon_chans.g
*
Other models using Axon_chans.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
Axon_chans_tab.g
Axon_comps.g
DiffRm.g
*
Other models using DiffRm.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
DS1_141099_rot2_sc_defmesh_axon_onlybasal.p
electrodes_fixbug.g
electrodes_try.g
*
Other models using electrodes_try.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
Excitatory_fibres.g
Fibres.g
*
Other models using Fibres.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
Firing_rate_modulation.g
*
Other models using Firing_rate_modulation.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
Firing_rate_profile.g
*
Other models using Firing_rate_profile.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
Golgi_grc_multicomp_ax.g
Gran_chan_tab.g
*
Other models using Gran_chan_tab.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
Cerebellar granular layer (Maex and De Schutter 1998)
Gran_comp_soma_dend_axon.g
Gran_const.g
*
Other models using Gran_const.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
Cerebellar granular layer (Maex and De Schutter 1998)
Gran_synchan.g
*
Other models using Gran_synchan.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
Harsch-Robinson_modulation.g
*
Other models using Harsch-Robinson_modulation.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
Hgradient.g
*
Other models using Hgradient.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
Inhibitory_fibres.g
*
Other models using Inhibitory_fibres.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
L5P_ascout.g
L5P_ascout_exp.g
*
Other models using L5P_ascout_exp.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
L5P_chans.g
*
Other models using L5P_chans.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
L5P_chans_tab.g
L5P_chans_tab_Temp.g
*
Other models using L5P_chans_tab_Temp.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
L5P_chans_Temp.g
*
Other models using L5P_chans_Temp.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
L5P_comps.g
*
Other models using L5P_comps.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
L5P_comps+axon+syn.g
L5P_const.g
*
Other models using L5P_const.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
L5P_const+axon+syn.g
*
Other models using L5P_const+axon+syn.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
L5P_graph.g
L5P_history.g
L5P_onlybasal_make.g
L5P_synchan.g
L5P37C_onlybasal.g
nsynapses.g
*
Other models using nsynapses.g:
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
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