< M A T L A B >
Copyright 1984-2006 The MathWorks, Inc.
Version 7.3.0.298 (R2006b)
August 03, 2006
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
>> if usejava('jvm'), com.mathworks.services.Prefs.setBooleanPref('EditorGraphicalDebugging', false); end
>> cd /Raw/gpslice07/gps0727/
>> [a_ts, h5_info] = ...
ns_load_tracesets('gps0727a.hdf5', ...
mergeStructs(struct('VmChan', 'Amp1 Vm', 'ImChan', 'Amp1 Im', ...
'trials', [1:18 34:63 79:103]), def_props));
??? Undefined function or variable 'def_props'.
>>
>> def_props = ...
struct('addTreats', struct('kynacid', 1e-3, 'picrotx', 1e-4, 'ttx', 0, 'drug_4ap', 0), ...
'renameTreats', struct('blocker_954AP', 'drug_4ap', ...
'attr_954AP', 'drug_4ap'));
>> [a_ts, h5_info] = ...
ns_load_tracesets('gps0727a.hdf5', ...
mergeStructs(struct('VmChan', 'Amp1 Vm', 'ImChan', 'Amp1 Im', ...
'trials', [1:18 34:63 79:103]), def_props));
??? Undefined function or variable "log_num".
Error in ==> <a href="error:/djlab/shared/matlab/lisu/ns_file_info.m,316,1">ns_file_info at 316</a>
for lg=1:log_num
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/functions/ns_load_tracesets.m,98,1">ns_load_tracesets at 98</a>
[nfo h5] = ns_file_info(data_src, 'hc');
>>
>> [a_ts, h5_info] = ...
ns_load_tracesets('gps0727a.hdf5', ...
mergeStructs(struct('VmChan', 'Amp1 Vm', 'ImChan', 'Amp1 Im', ...
'trials', [1:18 34:63 79:103]), def_props));
??? Undefined function or variable "log_num".
Error in ==> <a href="error:/djlab/shared/matlab/lisu/ns_file_info.m,316,1">ns_file_info at 316</a>
for lg=1:log_num
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/functions/ns_load_tracesets.m,98,1">ns_load_tracesets at 98</a>
[nfo h5] = ns_file_info(data_src, 'hc');
>>
>> exit
M-Shell finished
< M A T L A B >
Copyright 1984-2006 The MathWorks, Inc.
Version 7.3.0.298 (R2006b)
August 03, 2006
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
>> if usejava('jvm'), com.mathworks.services.Prefs.setBooleanPref('EditorGraphicalDebugging', false); end
>> cd /Raw/gpslice07/gps0727/
>> def_props = ...
struct('addTreats', struct('kynacid', 1e-3, 'picrotx', 1e-4, 'ttx', 0, 'drug_4ap', 0), ...
'renameTreats', struct('blocker_954AP', 'drug_4ap', ...
'attr_954AP', 'drug_4ap'))
def_props =
addTreats: [1x1 struct]
renameTreats: [1x1 struct]
>> [a_ts, h5_info] = ...
ns_load_tracesets('gps0727a.hdf5', ...
mergeStructs(struct('VmChan', 'Amp1 Vm', 'ImChan', 'Amp1 Im', ...
'trials', [1:18 34:63 79:103]), def_props))
??? Error using ==> ns_file_info
Too many output arguments.
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/functions/ns_load_tracesets.m,98,1">ns_load_tracesets at 98</a>
[nfo h5] = ns_file_info(data_src, 'hc');
>> exit
M-Shell finished
< M A T L A B >
Copyright 1984-2006 The MathWorks, Inc.
Version 7.3.0.298 (R2006b)
August 03, 2006
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
>> if usejava('jvm'), com.mathworks.services.Prefs.setBooleanPref('EditorGraphicalDebugging', false); end
>> cd /Raw/gpslice07/gps0727/
>> def_props = ...
struct('addTreats', struct('kynacid', 1e-3, 'picrotx', 1e-4, 'ttx', 0, 'drug_4ap', 0), ...
'renameTreats', struct('blocker_954AP', 'drug_4ap', ...
'attr_954AP', 'drug_4ap'))
def_props =
addTreats: [1x1 struct]
renameTreats: [1x1 struct]
>> [a_ts, h5_info] = ...
ns_load_tracesets('gps0727a.hdf5', ...
mergeStructs(struct('VmChan', 'Amp1 Vm', 'ImChan', 'Amp1 Im', ...
'trials', [1:18 34:63 79:103]), def_props));
>>
>> a_ts
a_ts =
Columns 1 through 2
[1x1 physiol_cip_traceset] [1x1 physiol_cip_traceset]
Columns 3 through 4
[1x1 physiol_cip_traceset] [1x1 physiol_cip_traceset]
Columns 5 through 6
[1x1 physiol_cip_traceset] [1x1 physiol_cip_traceset]
Columns 7 through 8
[1x1 physiol_cip_traceset] [1x1 physiol_cip_traceset]
Columns 9 through 10
[1x1 physiol_cip_traceset] [1x1 physiol_cip_traceset]
Columns 11 through 12
[1x1 physiol_cip_traceset] [1x1 physiol_cip_traceset]
Columns 13 through 14
[1x1 physiol_cip_traceset] [1x1 physiol_cip_traceset]
Columns 15 through 16
[1x1 physiol_cip_traceset] [1x1 physiol_cip_traceset]
Columns 17 through 18
[1x1 physiol_cip_traceset] [1x1 physiol_cip_traceset]
Columns 19 through 20
[1x1 physiol_cip_traceset] [1x1 physiol_cip_traceset]
Columns 21 through 22
[1x1 physiol_cip_traceset] [1x1 physiol_cip_traceset]
Column 23
[1x1 physiol_cip_traceset]
>> a_fs = ...
physiol_cip_traceset_fileset([a_ts], [], [],...
struct('profile_class_name', ...
'getProfileAllSpikes', ...
'neuronIdStart', 159))
physiol_cip_traceset_fileset, tracesets from cell array
ans =
neuron_idx: [1x1 struct]
params_tests_dataset: [1x1 params_tests_dataset]
params_tests_dataset, tracesets from cell array
ans =
list: {1x23 cell}
dt: []
dy: []
id: 'tracesets from cell array'
props: [1x1 struct]
Optional properties of params_tests_dataset:
ans =
profile_class_name: 'getProfileAllSpikes'
neuronIdStart: 159
>> cip_trace(a_ts, 1)
??? Input argument "dy" is undefined.
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/classes/@cip_trace/cip_trace.m,67,1">cip_trace.cip_trace at 67</a>
trace_obj = trace(datasrc, dt, dy, id, props);
>> a_ct = cip_trace(a_ts{1}, 1)
gps0727a_chan2(t1)
ans =
pulse_time_start: 300000
pulse_time_width: 0
trace: [1x1 trace]
>> plot(a_ct)
ans =
1
>> a_ct.dt
ans =
1.0000e-04
>> help physiol_cip_traceset/cip_trace
cip_trace - Loads a cip_trace object from a raw data file in the traceset.
Usage:
a_cip_trace = cip_trace(traceset, trace_index, props)
Description:
Parameters:
traceset: A physiol_cip_traceset object.
trace_index: Index of file in traceset.
props: A structure with any optional properties.
showParamsList: Cell array of params to add to id field.
showName: Show the name of the cell in the id field (default=1).
TracesetIndex: Indicates in the id field.
Returns:
a_cip_trace: A cip_trace object that holds the raw data.
See also: <a href="matlab:help itemResultsRow">itemResultsRow</a>, <a href="matlab:help params_tests_fileset">params_tests_fileset</a>, <a href="matlab:help paramNames">paramNames</a>, <a href="matlab:help testNames">testNames</a>
$Id: cip_trace.m 919 2008-01-10 05:12:29Z cengiz $
Author: Cengiz Gunay <cgunay@emory.edu>, 2005/07/13
Modified by:
Li, Su <su.li@emory.edu>, 2007/06/10 for adding HDF5 compatibility.
>> a_ct = cip_trace(a_ts{1}, 1, struct('spike_finder', 2))
gps0727a_chan2(t1)
ans =
pulse_time_start: 300000
pulse_time_width: 0
trace: [1x1 trace]
>> a_sp = spikes(a_ct)
spikes, id=gps0727a_chan2(t1)
ans =
times: [1x136 double]
num_samples: 300000
dt: 1.0000e-04
id: 'gps0727a_chan2(t1)'
>> plot(a_sp)
ans =
2
>> methods(a_sp)
Methods for class spikes:
ISICV periodWhole spikeRateISI
SFA plot spikes
addSpikes plotData subsref
display plotFreqVsTime vertcat
get plotISIs withinPeriod
getISIs set withinPeriodWOffset
getResults spikeAmpSlope
intoPeriod spikeRate
>> figure; hist(getISIs(a_sp))
>> figure; hist(getISIs(a_sp, 100))
??? Attempt to reference field of non-structure array.
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/classes/@spikes/withinPeriodWOffset.m,29,1">spikes.withinPeriodWOffset at 29</a>
s.times = s.times(s.times > a_period.start_time & s.times <= a_period.end_time);
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/classes/@spikes/withinPeriod.m,33,1">spikes.withinPeriod at 33</a>
s = withinPeriodWOffset(s, a_period);
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/classes/@spikes/getISIs.m,34,1">spikes.getISIs at 34</a>
s = withinPeriod(s, a_period);
>> getResults(a_sp)
??? Reference to non-existent field 'trace'.
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/classes/@spikes/getResults.m,36,1">spikes.getResults at 36</a>
if isempty(s.trace.data)
>> getResults(a_sp, a_ct)
??? Reference to non-existent field 'trace'.
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/classes/@spikes/getResults.m,36,1">spikes.getResults at 36</a>
if isempty(s.trace.data)
>> a_sp
spikes, id=gps0727a_chan2(t1)
ans =
times: [1x136 double]
num_samples: 300000
dt: 1.0000e-04
id: 'gps0727a_chan2(t1)'
>> struct(a_sp)
ans =
times: [1x136 double]
num_samples: 300000
dt: 1.0000e-04
id: 'gps0727a_chan2(t1)'
>> getResults(a_sp, a_ct)
??? Reference to non-existent field 'trace'.
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/classes/@spikes/getResults.m,44,1">spikes.getResults at 44</a>
ms_factor = 1e3 * s.trace.dt;
>> getResults(a_sp, a_ct)
??? Input argument "a_period" is undefined.
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/classes/@spikes/ISICV.m,30,1">spikes.ISICV at 30</a>
ISIs = getISIs(s, a_period);
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/classes/@spikes/getResults.m,49,1">spikes.getResults at 49</a>
results.ISICV = ISICV(s);
>> help spikes/ISICV
ISICV - Calculates the coefficient of variation (CV) of the
inter-spike-intervals (ISI).
Usage:
cv = ISICV(s, a_period)
Description:
Parameters:
s: A spikes object.
a_period: The period where spikes were found (optional)
Returns:
cv: Coefficient of variation.
See also: <a href="matlab:help spikes">spikes</a>, <a href="matlab:help period">period</a>
$Id: ISICV.m 818 2007-08-28 20:28:51Z cengiz $
Author: Cengiz Gunay <cgunay@emory.edu>, 2004/09/13
>> getResults(a_sp, a_ct)
ans =
spikeRate: 4.5333
spikeRateISI: 4.5317
ISICV: 0.0791
>> plotFigure(plotFreqVsTime(a_sp))
ans =
2
>> getResults(a_ct)
??? Input argument "a_spikes" is undefined.
Error in ==> <a href="error:/djlab/private/cengiz/work/pandora/classes/@cip_trace/getResults.m,29,1">cip_trace.getResults at 29</a>
results = mergeStructs(getRateResults(a_cip_trace, a_spikes), ...
>> methods(trace)
Methods for class trace:
analyzeSpikesInPeriod getDy setProp
calcAvg getResults spike_shape
calcMax getSpike spikes
calcMin periodWhole subsref
display plot trace
findFilteredSpikes plotData withinPeriod
findFilteredSpikes-tom plot_abstract
get set
>> exit
M-Shell finished
