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In silico hippocampal modeling for multi-target pharmacotherapy in schizophrenia (Sherif et al 2020)
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Accession:
258738
"Using a hippocampal CA3 computer model with 1200 neurons, we examined the effects of alterations in NMDAR, HCN (Ih current), and GABAAR on information flow (measured with normalized transfer entropy), and in gamma activity in local field potential (LFP). We found that altering NMDARs, GABAAR, Ih, individually or in combination, modified information flow in an inverted-U shape manner, with information flow reduced at low and high levels of these parameters. Theta-gamma phase-amplitude coupling also had an inverted-U shape relationship with NMDAR augmentation. The strong information flow was associated with an intermediate level of synchrony, seen as an intermediate level of gamma activity in the LFP, and an intermediate level of pyramidal cell excitability"
Reference:
1 .
Sherif MA, Neymotin SA, Lytton WW (2020) In silico hippocampal modeling for multi-target pharmacotherapy in schizophrenia.
NPJ Schizophr
6
:25
[
PubMed
]
Citations
Citation Browser
Model Information
(Click on a link to find other models with that property)
Model Type:
Realistic Network;
Brain Region(s)/Organism:
Hippocampus;
Cell Type(s):
Hippocampus CA3 pyramidal GLU cell;
Hippocampus CA3 interneuron basket GABA cell;
Hippocampus CA3 stratum oriens lacunosum-moleculare interneuron;
Channel(s):
I h;
Gap Junctions:
Receptor(s):
AMPA;
NMDA;
Gene(s):
NR2A GRIN2A;
Transmitter(s):
Glutamate;
Gaba;
Simulation Environment:
NEURON;
Model Concept(s):
Schizophrenia;
Implementer(s):
Sherif, Mohamed [mohamed.sherif.md at gmail.com];
Search NeuronDB
for information about:
Hippocampus CA3 pyramidal GLU cell
;
Hippocampus CA3 interneuron basket GABA cell
;
AMPA
;
NMDA
;
I h
;
Gaba
;
Glutamate
;
/
CA3modelCode_npjSchizophrenia_September2020--main
data
README.md
CA1ih.mod
CA1ika.mod
*
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CA1ikdr.mod
*
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Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
CA1ina.mod
*
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CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
cagk.mod
*
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A model of unitary responses from A/C and PP synapses in CA3 pyramidal cells (Baker et al. 2010)
Amyloid beta (IA block) effects on a model CA1 pyramidal cell (Morse et al. 2010)
CA1 pyramidal neuron: effects of R213Q and R312W Kv7.2 mutations (Miceli et al. 2013)
CA3 pyramidal neuron (Safiulina et al. 2010)
CA3 pyramidal neuron: firing properties (Hemond et al. 2008)
Channel density variability among CA1 neurons (Migliore et al. 2018)
Circadian rhythmicity shapes astrocyte morphology and neuronal function in CA1 (McCauley et al 2020)
Distinct current modules shape cellular dynamics in model neurons (Alturki et al 2016)
Neuronal dendrite calcium wave model (Neymotin et al, 2015)
caolmw.mod
*
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CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
capr.mod
*
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CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
expsynstdp.mod
Gfluctp.mod
*
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Dendritic Impedance in Neocortical L5 PT neurons (Kelley et al. accepted)
Dendritic Impedance in Neocortical L5 PT neurons (Kelley et al. accepted)
HCN1.mod
*
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Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
HCN2.mod
IA.mod
icaolmw.mod
*
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CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
icapr.mod
*
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CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
iholmkop.mod
*
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CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
iholmw.mod
*
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Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
ihpyrkop.mod
*
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CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
ihstatic.mod
*
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Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
infot.mod
*
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Synaptic scaling balances learning in a spiking model of neocortex (Rowan & Neymotin 2013)
kahppr.mod
*
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CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
kaolmkop.mod
*
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CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
kapyrkop.mod
*
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CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
kcaolmw.mod
*
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Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
kcpr.mod
*
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CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
kdrbwb.mod
*
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kdrolmkop.mod
*
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Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
kdrpr.mod
*
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kdrpyrkop.mod
*
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Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
km.mod
misc.mod
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Neuronal dendrite calcium wave model (Neymotin et al, 2015)
MyExp2Syn.mod
*
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MyExp2SynAlpha.mod
*
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MyExp2SynBB.mod
*
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Dendritic Impedance in Neocortical L5 PT neurons (Kelley et al. accepted)
Dendritic Impedance in Neocortical L5 PT neurons (Kelley et al. accepted)
Dendritic Impedance in Neocortical L5 PT neurons (Kelley et al. accepted)
Dendritic Impedance in Neocortical L5 PT neurons (Kelley et al. accepted)
Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
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MyExp2SynNMDA.mod
*
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Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
MyExp2SynNMDABB.mod
*
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Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
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nafbwb.mod
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Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
nafolmkop.mod
*
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nafpr.mod
*
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nafpyrkop.mod
*
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samnutils.mod
sampen.mod
stats.mod
updown.mod
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vecst.mod
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Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015)
Electrostimulation to reduce synaptic scaling driven progression of Alzheimers (Rowan et al. 2014)
Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014)
Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016)
Neuronal dendrite calcium wave model (Neymotin et al, 2015)
Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012)
Reinforcement learning of targeted movement (Chadderdon et al. 2012)
Sensorimotor cortex reinforcement learning of 2-joint virtual arm reaching (Neymotin et al. 2013)
Synaptic scaling balances learning in a spiking model of neocortex (Rowan & Neymotin 2013)
wrap.mod
*
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Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
analysisPlottingCode.py
aux_fun.inc
*
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Ca+/HCN channel-dependent persistent activity in multiscale model of neocortex (Neymotin et al 2016)
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Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016)
batch.py
conf.py
declist.hoc
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decmat.hoc
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decnqs.hoc
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decvec.hoc
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Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014)
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Reinforcement learning of targeted movement (Chadderdon et al. 2012)
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default.hoc
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Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014)
Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016)
Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012)
Reinforcement learning of targeted movement (Chadderdon et al. 2012)
Sensorimotor cortex reinforcement learning of 2-joint virtual arm reaching (Neymotin et al. 2013)
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drline.hoc
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Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015)
Electrostimulation to reduce synaptic scaling driven progression of Alzheimers (Rowan et al. 2014)
Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014)
Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016)
Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012)
Reinforcement learning of targeted movement (Chadderdon et al. 2012)
Sensorimotor cortex reinforcement learning of 2-joint virtual arm reaching (Neymotin et al. 2013)
Synaptic scaling balances learning in a spiking model of neocortex (Rowan & Neymotin 2013)
fig1sample.png
fig1simulationConfig.cfg
geom.py
grvec.hoc
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labels.hoc
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local.hoc
*
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Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015)
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Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014)
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misc.h
network.py
nqs.hoc
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nqs_utils.hoc
*
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nrnoc.hoc
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params.py
psd.py
pyinit.py
pywrap.hoc
*
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Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016)
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run.py
runone.py
simctrl.hoc
*
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Boolean network-based analysis of the apoptosis network (Mai and Liu 2009)
CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
Ca+/HCN channel-dependent persistent activity in multiscale model of neocortex (Neymotin et al 2016)
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Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015)
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Hopfield and Brody model (Hopfield, Brody 2000) (NEURON+python)
Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014)
Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016)
Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012)
Reinforcement learning of targeted movement (Chadderdon et al. 2012)
Sensorimotor cortex reinforcement learning of 2-joint virtual arm reaching (Neymotin et al. 2013)
Synaptic scaling balances learning in a spiking model of neocortex (Rowan & Neymotin 2013)
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stats.hoc
*
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syncode.hoc
*
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Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015)
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updown.hoc
xgetargs.hoc
*
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Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016)
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