Distributed computing tool for NEURON, NEURONPM (screensaver) (Calin-Jageman and Katz 2006)


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Accession:82891
"... To lower the barrier for large-scale model analysis, we have developedNeuronPM, a client/server application that creates a “screen-saver” cluster for running simulations in NEURON (Hines & Carnevale, 1997). ... The NeuronPM client is a Windows-based screen saver, and the NeuronPM server can be hosted on any Apache/PHP/MySQL server. ... Administrative panels make it simple to upload model files, define the parameters and conditions to vary, and then monitor client status and work progress. NeuronPM is open-source freeware and is available for download at http://neuronpm.homeip.net. ..."
Reference:
1 . Calin-Jageman RJ, Katz PS (2006) A distributed computing tool for generating neural simulation databases. Neural Comput 18:2923-7 [PubMed]
Citations  Citation Browser
Model Information (Click on a link to find other models with that property)
Model Type:
Brain Region(s)/Organism:
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURONPM (web link to tool);
Model Concept(s): Methods;
Implementer(s): Calin-Jageman, Robert [rcalinjageman at gsu dot edu];
(located via links below)
#!/bin/sh

# An example hook script to verify what is about to be pushed.  Called by "git
# push" after it has checked the remote status, but before anything has been
# pushed.  If this script exits with a non-zero status nothing will be pushed.
#
# This hook is called with the following parameters:
#
# $1 -- Name of the remote to which the push is being done
# $2 -- URL to which the push is being done
#
# If pushing without using a named remote those arguments will be equal.
#
# Information about the commits which are being pushed is supplied as lines to
# the standard input in the form:
#
#   <local ref> <local sha1> <remote ref> <remote sha1>
#
# This sample shows how to prevent push of commits where the log message starts
# with "WIP" (work in progress).

remote="$1"
url="$2"

z40=0000000000000000000000000000000000000000

while read local_ref local_sha remote_ref remote_sha
do
	if [ "$local_sha" = $z40 ]
	then
		# Handle delete
		:
	else
		if [ "$remote_sha" = $z40 ]
		then
			# New branch, examine all commits
			range="$local_sha"
		else
			# Update to existing branch, examine new commits
			range="$remote_sha..$local_sha"
		fi

		# Check for WIP commit
		commit=`git rev-list -n 1 --grep '^WIP' "$range"`
		if [ -n "$commit" ]
		then
			echo >&2 "Found WIP commit in $local_ref, not pushing"
			exit 1
		fi
	fi
done

exit 0