Advanced search
User account
Login
Register
Find models by
Model name
First author
Each author
Find models for
Brain region
Concept
Find models of
Realistic Microcircuits
Connectionist Networks
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Download zip file
Auto-launch
Help downloading and running models
Model Information
Model File
Versions
Accession:
97917
Neuron tree topology equations can be split into two subtrees and solved on different processors with no change in accuracy, stability, or computational effort; communication costs involve only sending and receiving two double precision values by each subtree at each time step. Application of the cell splitting method to two published network models exhibits good runtime scaling on twice as many processors as could be effectively used with whole-cell balancing.
Reference:
1 .
Hines ML, Eichner H, Schürmann F (2008) Neuron splitting in compute-bound parallel network simulations enables runtime scaling with twice as many processors.
J Comput Neurosci
25
:203-10
[
PubMed
]
Citations
Citation Browser
Model Information
(Click on a link to find other models with that property)
Model Type:
Realistic Network;
Brain Region(s)/Organism:
Generic;
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment:
NEURON;
Model Concept(s):
Methods;
Implementer(s):
Hines, Michael [Michael.Hines at Yale.edu];
/
splitcell
pardentategyrus
readme.html
*
Other models using readme.html:
Dentate gyrus network model (Santhakumar et al 2005)
Parallel network simulations with NEURON (Migliore et al 2006)
bgka.mod
*
Other models using bgka.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
CA1 pyramidal neuron: synaptic plasticity during theta cycles (Saudargiene et al. 2015)
Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
Parallel network simulations with NEURON (Migliore et al 2006)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
The APP in C-terminal domain alters CA1 neuron firing (Pousinha et al 2019)
CaBK.mod
*
Other models using CaBK.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Parallel network simulations with NEURON (Migliore et al 2006)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
ccanl.mod
*
Other models using ccanl.mod:
CA1 network model for place cell dynamics (Turi et al 2019)
CA1 network model: interneuron contributions to epileptic deficits (Shuman et al 2019)
CA1 pyramidal neuron: synaptic plasticity during theta cycles (Saudargiene et al. 2015)
Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
Parallel network simulations with NEURON (Migliore et al 2006)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
The APP in C-terminal domain alters CA1 neuron firing (Pousinha et al 2019)
Gfluct2.mod
*
Other models using Gfluct2.mod:
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Engaging distinct oscillatory neocortical circuits (Vierling-Claassen et al. 2010)
Fluctuating synaptic conductances recreate in-vivo-like activity (Destexhe et al 2001)
Parallel network simulations with NEURON (Migliore et al 2006)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
gskch.mod
*
Other models using gskch.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
Parallel network simulations with NEURON (Migliore et al 2006)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
hyperde3.mod
*
Other models using hyperde3.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
Parallel network simulations with NEURON (Migliore et al 2006)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
ichan2.mod
*
Other models using ichan2.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009)
Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009)
Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Parallel network simulations with NEURON (Migliore et al 2006)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
LcaMig.mod
*
Other models using LcaMig.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
CA1 network model for place cell dynamics (Turi et al 2019)
CA1 network model: interneuron contributions to epileptic deficits (Shuman et al 2019)
CA1 pyramidal neuron: synaptic plasticity during theta cycles (Saudargiene et al. 2015)
Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
Parallel network simulations with NEURON (Migliore et al 2006)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
The APP in C-terminal domain alters CA1 neuron firing (Pousinha et al 2019)
nca.mod
*
Other models using nca.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
CA1 network model for place cell dynamics (Turi et al 2019)
CA1 network model: interneuron contributions to epileptic deficits (Shuman et al 2019)
CA1 pyramidal neuron: synaptic plasticity during theta cycles (Saudargiene et al. 2015)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
Parallel network simulations with NEURON (Migliore et al 2006)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
The APP in C-terminal domain alters CA1 neuron firing (Pousinha et al 2019)
tca.mod
*
Other models using tca.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Parallel network simulations with NEURON (Migliore et al 2006)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
bg.sh
DG500_M7.hoc
*
Other models using DG500_M7.hoc:
Dentate gyrus network model (Santhakumar et al 2005)
Parallel network simulations with NEURON (Migliore et al 2006)
dgnetactivity.jpg
*
Other models using dgnetactivity.jpg:
Dentate gyrus network model (Santhakumar et al 2005)
Parallel network simulations with NEURON (Migliore et al 2006)
dgnettraces.jpg
*
Other models using dgnettraces.jpg:
Dentate gyrus network model (Santhakumar et al 2005)
Parallel network simulations with NEURON (Migliore et al 2006)
init.hoc
initorig.hoc
*
Other models using initorig.hoc:
Parallel network simulations with NEURON (Migliore et al 2006)
modstat
*
Other models using modstat:
Parallel network simulations with NEURON (Migliore et al 2006)
mosinit_orig.hoc
*
Other models using mosinit_orig.hoc:
Dentate gyrus network model (Santhakumar et al 2005)
Parallel network simulations with NEURON (Migliore et al 2006)
out.std
parRI10sp.hoc
RI10sp.hoc
test1.sh
*
Other models using test1.sh:
Parallel network simulations with NEURON (Migliore et al 2006)
time
*
Other models using time:
Parallel network simulations with NEURON (Migliore et al 2006)
File not selected
<- Select file from this column.
