Citations for Synaptic information transfer in computer models of neocortical columns (Neymotin et al. 2010)

Legends: Link to a Model Reference cited by multiple papers


Neymotin SA, Jacobs KM, Fenton AA, Lytton WW (2011) Synaptic information transfer in computer models of neocortical columns. J Comput Neurosci 30:69-84 [PubMed]

References and models cited by this paper

References and models that cite this paper

Aldworth ZN, Miller JP, Gedeon T, Cummins GI, Dimitrov AG (2005) Dejittered spike-conditioned stimulus waveforms yield improved estimates of neuronal feature selectivity and spike-timing precision of sensory interneurons. J Neurosci 25:5323-32 [Journal] [PubMed]
Bartos M, Vida I, Jonas P (2007) Synaptic mechanisms of synchronized gamma oscillations in inhibitory interneuron networks. Nat Rev Neurosci 8:45-56 [Journal] [PubMed]
Belitski A, Gretton A, Magri C, Murayama Y, Montemurro MA, Logothetis NK, Panzeri S (2008) Low-frequency local field potentials and spikes in primary visual cortex convey independent visual information. J Neurosci 28:5696-709 [Journal] [PubMed]
Börgers C, Kopell N (2005) Effects of noisy drive on rhythms in networks of excitatory and inhibitory neurons. Neural Comput 17:557-608 [Journal] [PubMed]
Brunel N (2000) Dynamics of networks of randomly connected excitatory and inhibitory spiking neurons. J Physiol Paris 94:445-63 [PubMed]
Brunel N, Wang XJ (2003) What determines the frequency of fast network oscillations with irregular neural discharges? I. Synaptic dynamics and excitation-inhibition balance. J Neurophysiol 90:415-30 [Journal] [PubMed]
Buonomano DV (2009) Harnessing chaos in recurrent neural networks. Neuron 63:423-5 [Journal] [PubMed]
Buonomano DV, Maass W (2009) State-dependent computations: spatiotemporal processing in cortical networks. Nat Rev Neurosci 10:113-25 [Journal] [PubMed]
Dehaene S, Changeux JP (2005) Ongoing spontaneous activity controls access to consciousness: a neuronal model for inattentional blindness. PLoS Biol 3:e141 [Journal] [PubMed]
Destexhe A, Contreras D (2006) Neuronal computations with stochastic network states. Science 314:85-90 [Journal] [PubMed]
Douglas RJ, Martin KAC, Whitteridge D (1989) A canonical microcircuit for neocortex Neural Comput 1:480-488
Edelman GM (1987) Neural Darwinism: The Theory of Neural Group Selection
French R (1991) Using semi-distributed representations to overcome catastrophic forgetting in connectionist networks Proceedings of the 13th annual cognitive science society conference :173-178
Gourévitch B, Eggermont JJ (2007) Evaluating information transfer between auditory cortical neurons. J Neurophysiol 97:2533-43 [Journal] [PubMed]
Gray CM, Singer W (1989) Stimulus-specific neuronal oscillations in orientation columns of cat visual cortex. Proc Natl Acad Sci U S A 86:1698-702 [PubMed]
Halgren E, Walter RD, Cherlow DG, Crandall PH (1978) Mental phenomena evoked by electrical stimulation of the human hippocampal formation and amygdala. Brain 101:83-117 [PubMed]
Hill S, Tononi G (2005) Modeling sleep and wakefulness in the thalamocortical system. J Neurophysiol 93:1671-98 [Journal] [PubMed]
Hlavackova-schindler K, Palus M, Vejmelka M, Bhattacharya J (2007) Causality detection based on information-theoretic approaches in time series analysis Physics Reports 441:1-46
Izhikevich EM, Edelman GM (2008) Large-scale model of mammalian thalamocortical systems. Proc Natl Acad Sci U S A 105:3593-8 [Journal] [PubMed]
Jaeger H, Haas H (2004) Harnessing nonlinearity: predicting chaotic systems and saving energy in wireless communication. Science 304:78-80 [Journal] [PubMed]
Jumarie G (1990) Relative Information: Theories and Applications
Kendall M (1938) A new measure of rank correlation Biometrika 30(1-2):81-93
Knight W (1966) A computer method for calculating Kendall's tau with ungrouped data Journal Of The American Statistical Associati 61:436-439
Lazar AA, Pnevmatikakis EA (2008) Faithful representation of stimuli with a population of integrate-and-fire neurons. Neural Comput 20:2715-44 [Journal] [PubMed]
Lytton WW (1996) Optimizing synaptic conductance calculation for network simulations. Neural Comput 8:501-9 [PubMed]
Lytton WW (1998) Adapting a feedforward heteroassociative network to Hodgkin-Huxley dynamics. J Comput Neurosci 5:353-64 [PubMed]
   Feedforward heteroassociative network with HH dynamics (Lytton 1998) [Model]
Lytton WW (2006) Neural Query System: Data-mining from within the NEURON simulator. Neuroinformatics 4:163-76 [Journal] [PubMed]
   Neural Query System NQS Data-Mining From Within the NEURON Simulator (Lytton 2006) [Model]
Lytton WW, Omurtag A (2007) Tonic-clonic transitions in computer simulation. J Clin Neurophysiol 24:175-81 [Journal] [PubMed]
   Tonic-clonic transitions in a seizure simulation (Lytton and Omurtag 2007) [Model]
Lytton WW, Sejnowski TJ (1991) Simulations of cortical pyramidal neurons synchronized by inhibitory interneurons. J Neurophysiol 66:1059-79 [Journal] [PubMed]
Lytton WW, Stewart M (2007) Data mining through simulation. Methods Mol Biol 401:155-66 [Journal] [PubMed]
Marschinski R, Kantz H (2002) Analysing the information flow between financial time series Condensed Matter Physics 30:275-281
Mazzoni A, Panzeri S, Logothetis NK, Brunel N (2008) Encoding of naturalistic stimuli by local field potential spectra in networks of excitatory and inhibitory neurons. PLoS Comput Biol 4:e1000239 [Journal] [PubMed]
Mccloskey M, Cohen NJ (1989) Catastrophic interference in connectionist networks: The sequential learning problem Psychol Learn Motiv 24:109-165
Mcdonnell M, Stocks N, Pearce C, Abbott D (2003) Stochastic resonance and data processing inequality Electronics Letters 39(17):1287-1288
Moser EI, Moser MB (1999) Is learning blocked by saturation of synaptic weights in the hippocampus? Neurosci Biobehav Rev 23:661-72 [PubMed]
Nelson S (2002) Cortical microcircuits: diverse or canonical? Neuron 36:19-27 [PubMed]
Palus M (1996) Detecting nonlinearity in multivariate time series Physics Letters A 213(3-4):138-147
Penfield W (1958) SOME MECHANISMS OF CONSCIOUSNESS DISCOVERED DURING ELECTRICAL STIMULATION OF THE BRAIN. Proc Natl Acad Sci U S A 44:51-66 [PubMed]
Phillips WA, Silverstein SM (2003) Convergence of biological and psychological perspectives on cognitive coordination in schizophrenia. Behav Brain Sci 26:65-82; discussion 82-137 [PubMed]
Press WH, Flannery BP, Teukolsky SA, Vetterling WT (2007) Numerical recipes: the art of scientific computing 3rd edition
Quian Quiroga R, Panzeri S (2009) Extracting information from neuronal populations: information theory and decoding approaches. Nat Rev Neurosci 10:173-85 [Journal] [PubMed]
Rao RP, Sejnowski TJ (2001) Spike-timing-dependent Hebbian plasticity as temporal difference learning. Neural Comput 13:2221-37 [Journal] [PubMed]
Ratcliff R (1990) Connectionist models of recognition memory: constraints imposed by learning and forgetting functions. Psychol Rev 97:285-308 [PubMed]
Rieke F, Warland D, Bialek W (1999) Spikes: Exploring the neural code
Salinas E, Sejnowski TJ (2001) Correlated neuronal activity and the flow of neural information. Nat Rev Neurosci 2:539-50 [Journal] [PubMed]
Salinas E, Sejnowski TJ (2002) Integrate-and-fire neurons driven by correlated stochastic input. Neural Comput 14:2111-55 [Journal] [PubMed]
Schreiber T (2000) Measuring information transfer Phys Rev Lett 85:461-4 [Journal] [PubMed]
Sirota A, Montgomery S, Fujisawa S, Isomura Y, Zugaro M, Buzsáki G (2008) Entrainment of neocortical neurons and gamma oscillations by the hippocampal theta rhythm. Neuron 60:683-97 [Journal] [PubMed]
Spencer KM, Nestor PG, Niznikiewicz MA, Salisbury DF, Shenton ME, McCarley RW (2003) Abnormal neural synchrony in schizophrenia. J Neurosci 23:7407-11 [PubMed]
Spencer KM, Nestor PG, Perlmutter R, Niznikiewicz MA, Klump MC, Frumin M, Shenton ME, McCarley RW (2004) Neural synchrony indexes disordered perception and cognition in schizophrenia. Proc Natl Acad Sci U S A 101:17288-93 [Journal] [PubMed]
Sporns O, Tononi G, Kötter R (2005) The human connectome: A structural description of the human brain. PLoS Comput Biol 1:e42 [Journal] [PubMed]
Tiesinga P, Sejnowski TJ (2009) Cortical enlightenment: are attentional gamma oscillations driven by ING or PING? Neuron 63:727-32 [Journal] [PubMed]
Traub RD, Jefferys GR, Whittington MA (1999) Fast Oscillations In Cortical Circuits
Uhlhaas PJ, Linden DE, Singer W, Haenschel C, Lindner M, Maurer K, Rodriguez E (2006) Dysfunctional long-range coordination of neural activity during Gestalt perception in schizophrenia. J Neurosci 26:8168-75 [Journal] [PubMed]
Uhlhaas PJ, Singer W (2006) Neural synchrony in brain disorders: relevance for cognitive dysfunctions and pathophysiology. Neuron 52:155-68 [Journal] [PubMed]
Uhlrich DJ, Manning KA, O'Laughlin ML, Lytton WW (2005) Photic-induced sensitization: acquisition of an augmenting spike-wave response in the adult rat through repeated strobe exposure. J Neurophysiol 94:3925-37 [Journal] [PubMed]
Victor JD (2006) Approaches to Information-Theoretic Analysis of Neural Activity. Biol Theory 1:302-316 [PubMed]
Vogels TP, Rajan K, Abbott LF (2005) Neural network dynamics. Annu Rev Neurosci 28:357-76 [Journal] [PubMed]
von der Malsburg C, Schneider W (1986) A neural cocktail-party processor. Biol Cybern 54:29-40 [PubMed]
Wang XJ, Buzsáki G (1996) Gamma oscillation by synaptic inhibition in a hippocampal interneuronal network model. J Neurosci 16:6402-13 [Journal] [PubMed]
   Gamma oscillations in hippocampal interneuron networks (Wang, Buzsaki 1996) [Model]
Zhu JJ, Lytton WW, Xue JT, Uhlrich DJ (1999) An intrinsic oscillation in interneurons of the rat lateral geniculate nucleus. J Neurophysiol 81:702-11 [Journal] [PubMed]
   Thalamic interneuron multicompartment model (Zhu et al. 1999) [Model]
Zhu JJ, Uhlrich DJ, Lytton WW (1999) Burst firing in identified rat geniculate interneurons. Neuroscience 91:1445-60 [PubMed]
   Thalamic interneuron multicompartment model (Zhu et al. 1999) [Model]
Kerr CC, Neymotin SA, Chadderdon GL, Fietkiewicz CT, Francis JT, Lytton WW (2012) Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex. IEEE Trans Neural Syst Rehabil Eng 20:153-60 [Journal] [PubMed]
   Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012) [Model]
Kerr CC, Van Albada SJ, Neymotin SA, Chadderdon GL, Robinson PA, Lytton WW (2013) Cortical information flow in Parkinson's disease: a composite network/field model. Front Comput Neurosci 7:39 [Journal] [PubMed]
   Composite spiking network/neural field model of Parkinsons (Kerr et al 2013) [Model]
Neymotin SA, Chadderdon GL, Kerr CC, Francis JT, Lytton WW (2013) Reinforcement learning of two-joint virtual arm reaching in a computer model of sensorimotor cortex. Neural Comput 25:3263-93 [Journal] [PubMed]
   Sensorimotor cortex reinforcement learning of 2-joint virtual arm reaching (Neymotin et al. 2013) [Model]
Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW (2016) Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Front Pharmacol 7:157 [Journal] [PubMed]
   Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016) [Model]
Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW (2011) Emergence of physiological oscillation frequencies in a computer model of neocortex. Front Comput Neurosci 5:19 [Journal] [PubMed]
   Emergence of physiological oscillation frequencies in neocortex simulations (Neymotin et al. 2011) [Model]
van Ooyen A, Carnell A, de Ridder S, Tarigan B, Mansvelder HD, Bijma F, de Gunst M, van Pelt J (2014) Independently outgrowing neurons and geometry-based synapse formation produce networks with realistic synaptic connectivity. PLoS One 9:e85858 [Journal] [PubMed]
   NETMORPH: creates NNs with realistic neuron morphologies (Koene et al. 2009, van Ooyen et al. 2014) [Model]
(76 refs)