Citations for Composite spiking network/neural field model of Parkinsons (Kerr et al 2013)

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Kerr CC, Van Albada SJ, Neymotin SA, Chadderdon GL, Robinson PA, Lytton WW (2013) Cortical information flow in Parkinson's disease: a composite network/field model. Front Comput Neurosci 7:39 [PubMed]

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References and models that cite this paper

Adesnik H, Scanziani M (2010) Lateral competition for cortical space by layer-specific horizontal circuits. Nature 464:1155-60 [Journal] [PubMed]
Ananthanarayanan R, Esser SK, Simon HD, Modha DS (2009) The cat is out of the bag:cortical simulations with 10^9 neurons and 10^13 synapses Supercomputing `09: Proceedings of the ACM/IEEE SC2009 Conference on High Performance Networking and Computing, Portland, OR
Balduzzi D, Tononi G (2008) Integrated information in discrete dynamical systems: motivation and theoretical framework. PLoS Comput Biol 4:e1000091 [Journal] [PubMed]
Benayoun M, Cowan JD, van Drongelen W, Wallace E (2010) Avalanches in a stochastic model of spiking neurons. PLoS Comput Biol 6:e1000846 [Journal] [PubMed]
Binzegger T, Douglas RJ, Martin KA (2004) A quantitative map of the circuit of cat primary visual cortex. J Neurosci 24:8441-53 [Journal] [PubMed]
Bolam JP, Hanley JJ, Booth PA, Bevan MD (2000) Synaptic organisation of the basal ganglia. J Anat 196 ( Pt 4):527-42 [PubMed]
Bollimunta A, Chen Y, Schroeder CE, Ding M (2008) Neuronal mechanisms of cortical alpha oscillations in awake-behaving macaques. J Neurosci 28:9976-88 [Journal] [PubMed]
Bosboom JL, Stoffers D, Stam CJ, van Dijk BW, Verbunt J, Berendse HW, Wolters ECh (2006) Resting state oscillatory brain dynamics in Parkinson's disease: an MEG study. Clin Neurophysiol 117:2521-31 [Journal] [PubMed]
Bressloff PC (2001) Traveling fronts and wave propagation failure in an in homogeneous neural network Physica D 155:83-100
Brown P, Oliviero A, Mazzone P, Insola A, Tonali P, Di Lazzaro V (2001) Dopamine dependency of oscillations between subthalamic nucleus and pallidum in Parkinson's disease. J Neurosci 21:1033-8 [PubMed]
Brown P, Williams D (2005) Basal ganglia local field potential activity: character and functional significance in the human. Clin Neurophysiol 116:2510-9 [Journal] [PubMed]
BURNS BD (1951) Some properties of isolated cerebral cortex in the unanesthetized cat. J Physiol 112:156-75 [PubMed]
Cassidy M, Mazzone P, Oliviero A, Insola A, Tonali P, Di Lazzaro V, Brown P (2002) Movement-related changes in synchronization in the human basal ganglia. Brain 125:1235-46 [PubMed]
Chadderdon GL, Neymotin SA, Kerr CC, Lytton WW (2012) Reinforcement learning of targeted movement in a spiking neuronal model of motor cortex. PLoS One 7:e47251 [Journal] [PubMed]
  • Reinforcement learning of targeted movement (Chadderdon et al. 2012) [Model]
Chaudhuri KR, Schapira AH (2009) Non-motor symptoms of Parkinson's disease: dopaminergic pathophysiology and treatment. Lancet Neurol 8:464-74 [Journal] [PubMed]
Cools R (2006) Dopaminergic modulation of cognitive function-implications for L-DOPA treatment in Parkinson's disease. Neurosci Biobehav Rev 30:1-23 [Journal] [PubMed]
Cui J, Xu L, Bressler SL, Ding M, Liang H (2008) BSMART: a Matlab/C toolbox for analysis of multichannel neural time series. Neural Netw 21:1094-104 [Journal] [PubMed]
Dayan P, Abbott LF (2001) Theoretical Neuroscience. Computational and Mathematical Modeling of Neural Systems
Deco G, Jirsa VK (2012) Ongoing cortical activity at rest: criticality, multistability, and ghost attractors. J Neurosci 32:3366-75 [Journal] [PubMed]
Destexhe A, Sejnowski TJ (2009) The Wilson-Cowan model, 36 years later. Biol Cybern 101:1-2 [Journal] [PubMed]
Dovzhenok A, Park C, Worth RM, Rubchinsky LL (2013) Failure of delayed feedback deep brain stimulation for intermittent pathological synchronization in Parkinson's disease. PLoS One 8:e58264 [Journal] [PubMed]
  • Failure of Deep Brain Stimulation in a basal ganglia neuronal network model (Dovzhenok et al. 2013) [Model]
Engel AK, Fries P (2010) Beta-band oscillations--signalling the status quo? Curr Opin Neurobiol 20:156-65 [Journal] [PubMed]
Freeman WJ (1975) Mass Action In The Nervous System
Fries P, Nikolic D, Singer W (2007) The gamma cycle. Trends Neurosci 30:309-16 [Journal] [PubMed]
Goldberg JA, Boraud T, Maraton S, Haber SN, Vaadia E, Bergman H (2002) Enhanced synchrony among primary motor cortex neurons in the 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine primate model of Parkinson's disease. J Neurosci 22:4639-53 [Journal] [PubMed]
Guo Y, Rubin JE (2011) Multi-site stimulation of subthalamic nucleus diminishes thalamocortical relay errors in a biophysical network model. Neural Netw 24:602-16 [Journal] [PubMed]
Hahn PJ, McIntyre CC (2010) Modeling shifts in the rate and pattern of subthalamopallidal network activity during deep brain stimulation. J Comput Neurosci 28:425-41 [Journal] [PubMed]
  • Basal ganglia network model of subthalamic deep brain stimulation (Hahn and McIntyre 2010) [Model]
Hajee ME, March WF, Lazzaro DR, Wolintz AH, Shrier EM, Glazman S, Bodis-Wollner IG (2009) Inner retinal layer thinning in Parkinson disease. Arch Ophthalmol 127:737-41 [Journal] [PubMed]
Hill S, Tononi G (2005) Modeling sleep and wakefulness in the thalamocortical system. J Neurophysiol 93:1671-98 [Journal] [PubMed]
Humphries MD, Stewart RD, Gurney KN (2006) A physiologically plausible model of action selection and oscillatory activity in the basal ganglia. J Neurosci 26:12921-42 [Journal] [PubMed]
  • Spiking neuron model of the basal ganglia (Humphries et al 2006) [Model]
Izhikevich EM, Edelman GM (2008) Large-scale model of mammalian thalamocortical systems. Proc Natl Acad Sci U S A 105:3593-8 [Journal] [PubMed]
Jenkins IH, Fernandez W, Playford ED, Lees AJ, Frackowiak RS, Passingham RE, Brooks DJ (1992) Impaired activation of the supplementary motor area in Parkinson's disease is reversed when akinesia is treated with apomorphine. Ann Neurol 32:749-57 [Journal] [PubMed]
Jirsa VK, Haken H (1996) Field Theory of Electromagnetic Brain Activity. Phys Rev Lett 77:960-963 [Journal] [PubMed]
Kaminski M, Ding M, Truccolo WA, Bressler SL (2001) Evaluating causal relations in neural systems: granger causality, directed transfer function and statistical assessment of significance. Biol Cybern 85:145-57 [Journal] [PubMed]
Kerr CC, Neymotin SA, Chadderdon GL, Fietkiewicz CT, Francis JT, Lytton WW (2012) Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex. IEEE Trans Neural Syst Rehabil Eng 20:153-60 [Journal] [PubMed]
  • Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012) [Model]
Kühn AA, Trottenberg T, Kivi A, Kupsch A, Schneider GH, Brown P (2005) The relationship between local field potential and neuronal discharge in the subthalamic nucleus of patients with Parkinson's disease. Exp Neurol 194:212-20 [Journal] [PubMed]
Leblois A, Boraud T, Meissner W, Bergman H, Hansel D (2006) Competition between feedback loops underlies normal and pathological dynamics in the basal ganglia. J Neurosci 26:3567-83 [Journal] [PubMed]
  • A dynamical model of the basal ganglia (Leblois et al 2006) [Model]
Lee KH, Williams LM, Breakspear M, Gordon E (2003) Synchronous gamma activity: a review and contribution to an integrative neuroscience model of schizophrenia. Brain Res Brain Res Rev 41:57-78 [PubMed]
Lefort S, Tomm C, Floyd Sarria JC, Petersen CC (2009) The excitatory neuronal network of the C2 barrel column in mouse primary somatosensory cortex. Neuron 61:301-16 [Journal] [PubMed]
Lizier JT, Heinzle J, Horstmann A, Haynes JD, Prokopenko M (2011) Multivariate information-theoretic measures reveal directed information structure and task relevant changes in fMRI connectivity. J Comput Neurosci 30:85-107 [Journal] [PubMed]
Llinás R, Ribary U, Contreras D, Pedroarena C (1998) The neuronal basis for consciousness. Philos Trans R Soc Lond B Biol Sci 353:1841-9 [Journal] [PubMed]
Lumer ED, Edelman GM, Tononi G (1997) Neural dynamics in a model of the thalamocortical system. I. Layers, loops and the emergence of fast synchronous rhythms. Cereb Cortex 7:207-27 [PubMed]
Lytton WW, Omurtag A (2007) Tonic-clonic transitions in computer simulation. J Clin Neurophysiol 24:175-81 [Journal] [PubMed]
  • Tonic-clonic transitions in a seizure simulation (Lytton and Omurtag 2007) [Model]
Lytton WW, Stewart M (2005) A rule-based firing model for neural networks Int J Bioelectromagn 7:47-50
Lytton WW, Stewart M (2006) Rule-based firing for network simulations. Neurocomputing 69:1160-1164
Mazzoni A, Whittingstall K, Brunel N, Logothetis NK, Panzeri S (2010) Understanding the relationships between spike rate and delta/gamma frequency bands of LFPs and EEGs using a local cortical network model. Neuroimage 52:956-72 [Journal] [PubMed]
McDonnell MD, Mohan A, Stricker C, Ward LM (2012) Input-rate modulation of ? oscillations is sensitive to network topology, delays and short-term plasticity. Brain Res 1434:162-77 [Journal] [PubMed]
Monchi O, Petrides M, Doyon J, Postuma RB, Worsley K, Dagher A (2004) Neural bases of set-shifting deficits in Parkinson's disease. J Neurosci 24:702-10 [Journal] [PubMed]
Monchi O, Petrides M, Mejia-Constain B, Strafella AP (2007) Cortical activity in Parkinson's disease during executive processing depends on striatal involvement. Brain 130:233-44 [Journal] [PubMed]
Morris RG, Downes JJ, Sahakian BJ, Evenden JL, Heald A, Robbins TW (1988) Planning and spatial working memory in Parkinson's disease. J Neurol Neurosurg Psychiatry 51:757-66 [PubMed]
Muller L, Destexhe A (2012) Propagating waves in thalamus, cortex and the thalamocortical system: Experiments and models. J Physiol Paris 106:222-38 [Journal] [PubMed]
Muthukumaraswamy SD (2010) Functional properties of human primary motor cortex gamma oscillations. J Neurophysiol 104:2873-85 [Journal] [PubMed]
Neymotin SA, Jacobs KM, Fenton AA, Lytton WW (2011) Synaptic information transfer in computer models of neocortical columns. J Comput Neurosci 30:69-84 [Journal] [PubMed]
  • Synaptic information transfer in computer models of neocortical columns (Neymotin et al. 2010) [Model]
Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW (2011) Emergence of physiological oscillation frequencies in a computer model of neocortex. Front Comput Neurosci 5:19 [Journal] [PubMed]
  • Emergence of physiological oscillation frequencies in neocortex simulations (Neymotin et al. 2011) [Model]
Niedermeyer E (1999) Electroencephalography: basic principles, clinical applications and related fields, 4th ed.
Nunez P (1995) Neocortical dynamics and human EEG rhythms
Oehrn C, Allbutt H, Henderson J (2007) Effect of ventrolateral thalamic nucleus lesions in the unilateral 6-hydroxydopamine rat model. Behav Brain Res 183:67-77 [Journal] [PubMed]
Oswald AM, Doiron B, Rinzel J, Reyes AD (2009) Spatial profile and differential recruitment of GABAB modulate oscillatory activity in auditory cortex. J Neurosci 29:10321-34 [Journal] [PubMed]
Park C, Worth RM, Rubchinsky LL (2011) Neural dynamics in parkinsonian brain: the boundary between synchronized and nonsynchronized dynamics. Phys Rev E Stat Nonlin Soft Matter Phys 83:042901 [Journal] [PubMed]
Priori A, Foffani G, Pesenti A, Tamma F, Bianchi AM, Pellegrini M, Locatelli M, Moxon KA, Villani RM (2004) Rhythm-specific pharmacological modulation of subthalamic activity in Parkinson's disease. Exp Neurol 189:369-79 [Journal] [PubMed]
Raz A, Feingold A, Zelanskaya V, Vaadia E, Bergman H (1996) Neuronal synchronization of tonically active neurons in the striatum of normal and parkinsonian primates. J Neurophysiol 76:2083-8 [Journal] [PubMed]
Rennie CJ, Wright JJ, Robinson PA (2000) Mechanisms of cortical electrical activity and emergence of gamma rhythm. J Theor Biol 205:17-35 [Journal] [PubMed]
Robinson PA, Kim JW (2012) Spike, rate, field, and hybrid methods for treating neuronal dynamics and interactions. J Neurosci Methods 205:283-94 [Journal] [PubMed]
Robinson PA, Loxley PN, O'Connor SC, Rennie CJ (2001) Modal analysis of corticothalamic dynamics, electroencephalographic spectra, and evoked potentials. Phys Rev E Stat Nonlin Soft Matter Phys 63:041909 [Journal] [PubMed]
Robinson PA, Rennie CJ, Rowe DL (2002) Dynamics of large-scale brain activity in normal arousal states and epileptic seizures. Phys Rev E Stat Nonlin Soft Matter Phys 65:041924 [Journal] [PubMed]
Robinson PA, Rennie CJ, Rowe DL, O'Connor SC, Gordon E (2005) Multiscale brain modelling. Philos Trans R Soc Lond B Biol Sci 360:1043-50 [Journal] [PubMed]
Robinson PA, Rennie CJ, Wright JJ (1997) Propagation and stability of waves of electrical activity in the cerebral cortex Phys Rev E 56:826-840
Rossini PM, Del Percio C, Pasqualetti P, Cassetta E, Binetti G, Dal Forno G, Ferreri F, Frisoni G, Chiovenda P, Miniussi C, Parisi L, Tombini M, Vecchio F, Babiloni C (2006) Conversion from mild cognitive impairment to Alzheimer's disease is predicted by sources and coherence of brain electroencephalography rhythms. Neuroscience 143:793-803 [Journal] [PubMed]
Rubchinsky LL, Kopell N, Sigvardt KA (2003) Modeling facilitation and inhibition of competing motor programs in basal ganglia subthalamic nucleus-pallidal circuits. Proc Natl Acad Sci U S A 100:14427-32 [Journal] [PubMed]
Rubino D, Robbins KA, Hatsopoulos NG (2006) Propagating waves mediate information transfer in the motor cortex. Nat Neurosci 9:1549-57 [Journal] [PubMed]
Soikkeli R, Partanen J, Soininen H, Pääkkönen A, Riekkinen P (1991) Slowing of EEG in Parkinson's disease. Electroencephalogr Clin Neurophysiol 79:159-65 [PubMed]
Song S, Sjöström PJ, Reigl M, Nelson S, Chklovskii DB (2005) Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS Biol 3:e68 [Journal] [PubMed]
Song W, Kerr CC, Lytton WW, Francis JT (2013) Cortical plasticity induced by spike-triggered microstimulation in primate somatosensory cortex. PLoS One 8:e57453 [Journal] [PubMed]
Stam CJ, Jelles B, Achtereekte HA, Rombouts SA, Slaets JP, Keunen RW (1995) Investigation of EEG non-linearity in dementia and Parkinson's disease. Electroencephalogr Clin Neurophysiol 95:309-17 [PubMed]
Stam KJ, Tavy DL, Jelles B, Achtereekte HA, Slaets JP, Keunen RW (1994) Non-linear dynamical analysis of multichannel EEG: clinical applications in dementia and Parkinson's disease. Brain Topogr 7:141-50 [PubMed]
Stoffers D, Bosboom JL, Deijen JB, Wolters EC, Berendse HW, Stam CJ (2007) Slowing of oscillatory brain activity is a stable characteristic of Parkinson's disease without dementia. Brain 130:1847-60 [Journal] [PubMed]
STOLLER A (1949) Slowing of the alpha-rhythm of the electroencephalogram and its association with mental deterioration and epilepsy. J Ment Sci 95:972-84 [PubMed]
Thomson AM, West DC, Wang Y, Bannister AP (2002) Synaptic connections and small circuits involving excitatory and inhibitory neurons in layers 2-5 of adult rat and cat neocortex: triple intracellular recordings and biocytin labelling in vitro. Cereb Cortex 12:936-53 [PubMed]
van Albada SJ, Gray RT, Drysdale PM, Robinson PA (2009) Mean-field modeling of the basal ganglia-thalamocortical system. II Dynamics of parkinsonian oscillations. J Theor Biol 257:664-88 [Journal] [PubMed]
van Albada SJ, Robinson PA (2009) Mean-field modeling of the basal ganglia-thalamocortical system. I Firing rates in healthy and parkinsonian states. J Theor Biol 257:642-63 [Journal] [PubMed]
Van Der Werf J, Jensen O, Fries P, Medendorp WP (2008) Gamma-band activity in human posterior parietal cortex encodes the motor goal during delayed prosaccades and antisaccades. J Neurosci 28:8397-405 [Journal] [PubMed]
Vijayan S, Kopell NJ (2012) Thalamic model of awake alpha oscillations and implications for stimulus processing. Proc Natl Acad Sci U S A 109:18553-8 [Journal] [PubMed]
Volman V, Bazhenov M, Sejnowski TJ (2011) Pattern of trauma determines the threshold for epileptic activity in a model of cortical deafferentation. Proc Natl Acad Sci U S A 108:15402-7 [Journal] [PubMed]
Weinberger M, Mahant N, Hutchison WD, Lozano AM, Moro E, Hodaie M, Lang AE, Dostrovsky JO (2006) Beta oscillatory activity in the subthalamic nucleus and its relation to dopaminergic response in Parkinson's disease. J Neurophysiol 96:3248-56 [Journal] [PubMed]
Wilson HR, Cowan JD (1973) A mathematical theory of the functional dynamics of cortical and thalamic nervous tissue. Kybernetik 13:55-80 [PubMed]
Wilson MT, Robinson PA, O'Neill B, Steyn-Ross DA (2012) Complementarity of spike- and rate-based dynamics of neural systems. PLoS Comput Biol 8:e1002560 [Journal] [PubMed]
Wright JJ, Liley DT (1995) Simulation of electrocortical waves. Biol Cybern 72:347-56 [PubMed]
Wright JJ, Liley DTJ (1996) Dynamics of the brain at global and microscopic scales: Neural networks and the EEG Behav Brain Sci 19:285-316
Fountas Z, Shanahan M (2017) The role of cortical oscillations in a spiking neural network model of the basal ganglia. PLoS One 12:e0189109 [Journal] [PubMed]
  • Cortical oscillations and the basal ganglia (Fountas & Shanahan 2017) [Model]
Neymotin SA, Chadderdon GL, Kerr CC, Francis JT, Lytton WW (2013) Reinforcement learning of two-joint virtual arm reaching in a computer model of sensorimotor cortex. Neural Comput 25:3263-93 [Journal] [PubMed]
  • Sensorimotor cortex reinforcement learning of 2-joint virtual arm reaching (Neymotin et al. 2013) [Model]
Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW (2016) Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Front Pharmacol 7:157 [Journal] [PubMed]
  • Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016) [Model]
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