Citations for Prob. Inference of Short-Term Synaptic Plasticity in Neocort. Microcircuits (Costa et al. 2013)

Legends: Link to a Model Reference cited by multiple papers


Costa RP, Sjöström PJ, van Rossum MC (2013) Probabilistic inference of short-term synaptic plasticity in neocortical microcircuits. Front Comput Neurosci 7:75 [PubMed]

References and models cited by this paper

References and models that cite this paper

Abbott LF, Regehr WG (2004) Synaptic computation. Nature 431:796-803 [Journal] [PubMed]
Abbott LF, Varela JA, Sen K, Nelson SB (1997) Synaptic depression and cortical gain control. Science 275:220-4 [PubMed]
Bhumbra GS, Beato M (2013) Reliable evaluation of the quantal determinants of synaptic efficacy using Bayesian analysis. J Neurophysiol 109:603-20 [Journal] [PubMed]
Brooks S, Gelman A (1998) General methods for monitoring convergence of iterative simulations Journal of Computational and Graphical Statistics :434-455
Buchanan KA, Blackman AV, Moreau AW, Elgar D, Costa RP, Lalanne T, Tudor Jones AA, Oyrer J, Sjöström PJ (2012) Target-specific expression of presynaptic NMDA receptors in neocortical microcircuits. Neuron 75:451-66 [Journal] [PubMed]
Calinski T, Harabasz J (1974) A dendrite method for cluster analysis Communications In Statistics-theory And Methods 3(1):1-27
Carvalho TP, Buonomano DV (2011) A novel learning rule for long-term plasticity of short-term synaptic plasticity enhances temporal processing. Front Integr Neurosci 5:20 [Journal] [PubMed]
Cheetham CE, Fox K (2010) Presynaptic development at L4 to l2/3 excitatory synapses follows different time courses in visual and somatosensory cortex. J Neurosci 30:12566-71 [Journal] [PubMed]
Dittman JS, Kreitzer AC, Regehr WG (2000) Interplay between facilitation, depression, and residual calcium at three presynaptic terminals. J Neurosci 20:1374-85 [PubMed]
Fung CC, Wong KY, Wang H, Wu S (2012) Dynamical synapses enhance neural information processing: gracefulness, accuracy, and mobility. Neural Comput 24:1147-85 [Journal] [PubMed]
Galarreta M, Hestrin S (1998) Frequency-dependent synaptic depression and the balance of excitation and inhibition in the neocortex. Nat Neurosci 1:587-94 [Journal] [PubMed]
Gelman A, Shirley K (2010) Inference from simulations and monitoring convergence Handbook of Markov Chain Monte Carlo: Methods and Applications :131-143
Heller K, Ghahramani Z (2005) Bayesian hierarchical clustering Proceedings of the 22nd international conference on Machine learning :297-304
Ihler A, Mandel M (2007) Kernel density estimation toolbox for matlab to download at http:--ics.udi.edu-ihler-code-kde.html
Klyachko VA, Stevens CF (2006) Temperature-dependent shift of balance among the components of short-term plasticity in hippocampal synapses. J Neurosci 26:6945-57 [Journal] [PubMed]
Le Bé JV, Markram H (2006) Spontaneous and evoked synaptic rewiring in the neonatal neocortex. Proc Natl Acad Sci U S A 103:13214-9 [Journal] [PubMed]
Loebel A, Silberberg G, Helbig D, Markram H, Tsodyks M, Richardson MJ (2009) Multiquantal release underlies the distribution of synaptic efficacies in the neocortex. Front Comput Neurosci 3:27 [Journal] [PubMed]
Maass W, Zador AM (1999) Dynamic stochastic synapses as computational units. Neural Comput 11:903-17 [PubMed]
Markram H, Lübke J, Frotscher M, Roth A, Sakmann B (1997) Physiology and anatomy of synaptic connections between thick tufted pyramidal neurones in the developing rat neocortex. J Physiol 500 ( Pt 2):409-40 [PubMed]
Markram H, Toledo-Rodriguez M, Wang Y, Gupta A, Silberberg G, Wu C (2004) Interneurons of the neocortical inhibitory system. Nat Rev Neurosci 5:793-807 [Journal] [PubMed]
Markram H, Tsodyks M (1996) Redistribution of synaptic efficacy between neocortical pyramidal neurons. Nature 382:807-10 [Journal] [PubMed]
Markram H, Wang Y, Tsodyks M (1998) Differential signaling via the same axon of neocortical pyramidal neurons. Proc Natl Acad Sci U S A 95:5323-8 [PubMed]
McGuinness L, Taylor C, Taylor RD, Yau C, Langenhan T, Hart ML, Christian H, Tynan PW, Donnelly P, Emptage NJ (2010) Presynaptic NMDARs in the hippocampus facilitate transmitter release at theta frequency. Neuron 68:1109-27 [Journal] [PubMed]
Milligan G, Cooper M (1985) An examination of procedures for determining the number of clusters in a data set Psychometrika 50:159-179
Nakagawa S, Hauber ME (2011) Great challenges with few subjects: statistical strategies for neuroscientists. Neurosci Biobehav Rev 35:462-73 [Journal] [PubMed]
Neal R (2003) Slice sampling Annals of Statistics :705-741
Pan B, Zucker RS (2009) A general model of synaptic transmission and short-term plasticity. Neuron 62:539-54 [Journal] [PubMed]
Pereira FC, Tishby N, Lee L (1993) Distributional clustering of English words 30th Annual Meeting of the Association for Computational Linguistics
Pouzat C, Hestrin S (1997) Developmental regulation of basket/stellate cell-->Purkinje cell synapses in the cerebellum. J Neurosci 17:9104-12 [PubMed]
Ramaswamy S, Hill SL, King JG, Schürmann F, Wang Y, Markram H (2012) Intrinsic morphological diversity of thick-tufted layer 5 pyramidal neurons ensures robust and invariant properties of in silico synaptic connections. J Physiol 590:737-52 [Journal] [PubMed]
Reyes A, Lujan R, Rozov A, Burnashev N, Somogyi P, Sakmann B (1998) Target-cell-specific facilitation and depression in neocortical circuits. Nat Neurosci 1:279-85 [Journal] [PubMed]
Reyes A, Sakmann B (1999) Developmental switch in the short-term modification of unitary EPSPs evoked in layer 2/3 and layer 5 pyramidal neurons of rat neocortex. J Neurosci 19:3827-35 [PubMed]
Richardson MJ, Melamed O, Silberberg G, Gerstner W, Markram H (2005) Short-term synaptic plasticity orchestrates the response of pyramidal cells and interneurons to population bursts. J Comput Neurosci 18:323-31 [Journal] [PubMed]
Rinaldi T, Silberberg G, Markram H (2008) Hyperconnectivity of local neocortical microcircuitry induced by prenatal exposure to valproic acid. Cereb Cortex 18:763-70 [Journal] [PubMed]
Romani A, Marchetti C, Bianchi D, Leinekugel X, Poirazi P, Migliore M, Marie H (2013) Computational modeling of the effects of amyloid-beta on release probability at hippocampal synapses. Front Comput Neurosci 7:1 [Journal] [PubMed]
  • Amyloid-beta effects on release probability and integration at CA3-CA1 synapses (Romani et al. 2013) [Model]
Rozov A, Burnashev N, Sakmann B, Neher E (2001) Transmitter release modulation by intracellular Ca2+ buffers in facilitating and depressing nerve terminals of pyramidal cells in layer 2/3 of the rat neocortex indicates a target cell-specific difference in presynaptic calcium dynamics. J Physiol 531:807-26 [PubMed]
Scanziani M, Gähwiler BH, Charpak S (1998) Target cell-specific modulation of transmitter release at terminals from a single axon. Proc Natl Acad Sci U S A 95:12004-9 [PubMed]
Sjöström PJ, Turrigiano GG, Nelson SB (2003) Neocortical LTD via coincident activation of presynaptic NMDA and cannabinoid receptors. Neuron 39:641-54 [PubMed]
Sokal RR (1958) A statistical method for evaluating systematic relationships Univ Kans Sci Bull 38:1409-1438
Sun HY, Dobrunz LE (2006) Presynaptic kainate receptor activation is a novel mechanism for target cell-specific short-term facilitation at Schaffer collateral synapses. J Neurosci 26:10796-807 [Journal] [PubMed]
Testa-Silva G, Loebel A, Giugliano M, de Kock CP, Mansvelder HD, Meredith RM (2012) Hyperconnectivity and slow synapses during early development of medial prefrontal cortex in a mouse model for mental retardation and autism. Cereb Cortex 22:1333-42 [Journal] [PubMed]
  • Hyperconnectivity, slow synapses in PFC mental retardation and autism model (Testa-Silva et al 2011) [Model]
Tóth K, McBain CJ (2000) Target-specific expression of pre- and postsynaptic mechanisms. J Physiol 525 Pt 1:41-51 [PubMed]
Tsodyks M, Uziel A, Markram H (2000) Synchrony generation in recurrent networks with frequency-dependent synapses. J Neurosci 20:RC50 [PubMed]
Tsodyks MV, Markram H (1997) The neural code between neocortical pyramidal neurons depends on neurotransmitter release probability. Proc Natl Acad Sci U S A 94:719-23 [PubMed]
Turkheimer FE, Hinz R, Cunningham VJ (2003) On the undecidability among kinetic models: from model selection to model averaging. J Cereb Blood Flow Metab 23:490-8 [Journal] [PubMed]
van Rossum MC, van der Meer MA, Xiao D, Oram MW (2008) Adaptive integration in the visual cortex by depressing recurrent cortical circuits. Neural Comput 20:1847-72 [Journal] [PubMed]
Varela JA, Sen K, Gibson J, Fost J, Abbott LF, Nelson SB (1997) A quantitative description of short-term plasticity at excitatory synapses in layer 2/3 of rat primary visual cortex. J Neurosci 17:7926-40 [Journal] [PubMed]
  • Short term plasticity of synapses onto V1 layer 2/3 pyramidal neuron (Varela et al 1997) [Model]
Wang Y, Markram H, Goodman PH, Berger TK, Ma J, Goldman-Rakic PS (2006) Heterogeneity in the pyramidal network of the medial prefrontal cortex. Nat Neurosci 9:534-42 [Journal] [PubMed]
Zucker RS, Regehr WG (2002) Short-term synaptic plasticity. Annu Rev Physiol 64:355-405 [Journal] [PubMed]
Costa RP, Froemke RC, Sjöström PJ, van Rossum MC (2015) Unified pre- and postsynaptic long-term plasticity enables reliable and flexible learning. Elife [Journal] [PubMed]
  • Memory savings through unified pre- and postsynaptic STDP (Costa et al 2015) [Model]
Costa RP, Padamsey Z, D'Amour JA, Emptage NJ, Froemke RC, Vogels TP (2017) Synaptic Transmission Optimization Predicts Expression Loci of Long-Term Plasticity. Neuron 96:177-189.e7 [Journal] [PubMed]
  • Statistical Long-term Synaptic Plasticity (statLTSP) (Costa et al 2017) [Model]
Esposito U, Giugliano M, Vasilaki E (2014) Adaptation of short-term plasticity parameters via error-driven learning may explain the correlation between activity-dependent synaptic properties, connectivity motifs and target specificity. Front Comput Neurosci 8:175 [Journal] [PubMed]
  • Adaptation of Short-Term Plasticity parameters (Esposito et al. 2015) [Model]
Hass J, Hertäg L, Durstewitz D (2016) A Detailed Data-Driven Network Model of Prefrontal Cortex Reproduces Key Features of In Vivo Activity. PLoS Comput Biol 12:e1004930 [Journal] [PubMed]
  • A detailed data-driven network model of prefrontal cortex (Hass et al 2016) [Model]
(54 refs)