Citations for Application of a common kinetic formalism for synaptic models (Destexhe et al 1994)
| Legends: | Link to a Model | Reference cited by multiple papers |
Destexhe A, Mainen ZF, Sejnowski TJ (1994) Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism. J Comput Neurosci 1:195-230 [PubMed]
References and models cited by this paper | References and models that cite this paper | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Aldrich RW, Corey DP, Stevens CF (1983) A reinterpretation of mammalian sodium channel gating based on single channel recording. Nature 306:436-41 [PubMed] Aldrich RW, Stevens CF (1983) Inactivation of open and closed sodium channels determined separately. Cold Spring Harb Symp Quant Biol 48 Pt 1:147-53 [PubMed] Aldrich RW, Stevens CF (1987) Voltage-dependent gating of single sodium channels from mammalian neuroblastoma cells. J Neurosci 7:418-31 [PubMed] Ambros-Ingerson J, Lynch G (1993) Channel gating kinetics and synaptic efficacy: a hypothesis for expression of long-term potentiation. Proc Natl Acad Sci U S A 90:7903-7 [PubMed] Andersen OS, Koeppe RE (1992) Molecular determinants of channel function. Physiol Rev 72:S89-158 [Journal] [PubMed] Andrade R, Malenka RC, Nicoll RA (1986) A G protein couples serotonin and GABAB receptors to the same channels in hippocampus. Science 234:1261-5 [PubMed] Armstrong CM (1969) Inactivation of the potassium conductance and related phenomena caused by quaternary ammonium ion injection in squid axons. J Gen Physiol 54:553-75 [PubMed] Armstrong CM (1992) Voltage-dependent ion channels and their gating. Physiol Rev 72:S5-13 [Journal] [PubMed] Augustine GJ, Charlton MP (1986) Calcium dependence of presynaptic calcium current and post-synaptic response at the squid giant synapse. J Physiol 381:619-40 [PubMed] Ball FG, Sansom MS (1989) Ion-channel gating mechanisms: model identification and parameter estimation from single channel recordings. Proc R Soc Lond B Biol Sci 236:385-416 [Journal] [PubMed] Bartol TM, Land BR, Salpeter EE, Salpeter MM (1991) Monte Carlo simulation of miniature endplate current generation in the vertebrate neuromuscular junction. Biophys J 59:1290-307 [Journal] [PubMed] Bell AJ (1992) Self-organisation in real neurons: anti-Hebb in channel space ? Advances In Neural Information Processing Systems, Moody JE:Hanson SJ:Lippmann RP, ed. pp.59 Bezanilla F (1985) Gating of sodium and potassium channels. J Membr Biol 88:97-111 [PubMed] Birnbaumer L (1992) Receptor-to-effector signaling through G proteins: roles for beta gamma dimers as well as alpha subunits. Cell 71:1069-72 [PubMed] Blaustein MP (1988) Calcium transport and buffering in neurons. Trends Neurosci 11:438-43 [PubMed] Borg-graham L (1991) Modelling the non-linear conductances of excitable membranes Cellular Neurobiology: A Practical Approach, Wheal CHADJ&HV, ed. pp.247 Breitwieser GE, Szabo G (1988) Mechanism of muscarinic receptor-induced K+ channel activation as revealed by hydrolysis-resistant GTP analogues. J Gen Physiol 91:469-93 [PubMed] Brown AM, Birnbaumer L (1990) Ionic channels and their regulation by G protein subunits. Annu Rev Physiol 52:197-213 [Journal] [PubMed] Brown DA (1990) G-proteins and potassium currents in neurons. Annu Rev Physiol 52:215-42 [Journal] [PubMed] Bush PC, Sejnowski TJ (1991) Simulations of a reconstructed cerebellar Purkinje cell based on simplified channel kinetics Neural Comput 3:321-332 Catterall WA (1992) Cellular and molecular biology of voltage-gated sodium channels. Physiol Rev 72:S15-48 [Journal] [PubMed] Chabala LD (1984) The kinetics of recovery and development of potassium channel inactivation in perfused squid (Loligo pealei) giant axons. J Physiol 356:193-220 [PubMed] Chanson M, Chandross KJ, Rook MB, Kessler JA, Spray DC (1993) Gating characteristics of a steeply voltage-dependent gap junction channel in rat Schwann cells. J Gen Physiol 102:925-46 [PubMed] Chen CF, Hess P (1990) Mechanism of gating of T-type calcium channels. J Gen Physiol 96:603-30 [PubMed] Clapham DE, Neer EJ (1993) New roles for G-protein beta gamma-dimers in transmembrane signalling. Nature 365:403-6 [Journal] [PubMed] Clay JR (1989) Slow inactivation and reactivation of the K+ channel in squid axons. A tail current analysis. Biophys J 55:407-14 [Journal] [PubMed] Clay JR, DeFelice LJ (1983) Relationship between membrane excitability and single channel open-close kinetics. Biophys J 42:151-7 [Journal] [PubMed] Clements JD, Lester RA, Tong G, Jahr CE, Westbrook GL (1992) The time course of glutamate in the synaptic cleft. Science 258:1498-501 [PubMed] Clements JD, Westbrook GL (1991) Activation kinetics reveal the number of glutamate and glycine binding sites on the N-methyl-D-aspartate receptor. Neuron 7:605-13 [PubMed] Colquhoun D, Hawkes AG (1977) Relaxation and fluctuations of membrane currents that flow through drug-operated channels. Proc R Soc Lond B Biol Sci 199:231-62 [Journal] [PubMed] Colquhoun D, Hawkes AG (1981) On the stochastic properties of single ion channels. Proc R Soc Lond B Biol Sci 211:205-35 [Journal] [PubMed] Colquhoun D, Jonas P, Sakmann B (1992) Action of brief pulses of glutamate on AMPA/kainate receptors in patches from different neurones of rat hippocampal slices. J Physiol 458:261-87 [PubMed] Destexhe A, Babloyantz A, Sejnowski TJ (1993) Ionic mechanisms for intrinsic slow oscillations in thalamic relay neurons. Biophys J 65:1538-52 [Journal] [PubMed]
Destexhe A, Contreras D, Sejnowski TJ, Steriade M (1994) A model of spindle rhythmicity in the isolated thalamic reticular nucleus. J Neurophysiol 72:803-18 [Journal] [PubMed]
Destexhe A, Mainen Z, Sejnowski TJ (1994) An efficient method for computing synaptic conductances based on a kinetic model of receptor binding Neural Comput 6:14-18 [Journal] Destexhe A, McCormick DA, Sejnowski TJ (1993) A model for 8-10 Hz spindling in interconnected thalamic relay and reticularis neurons. Biophys J 65:2473-7 [Journal] [PubMed] DiFrancesco D, Mangoni M (1994) Modulation of single hyperpolarization-activated channels (i(f)) by cAMP in the rabbit sino-atrial node. J Physiol 474:473-82 [PubMed] Edwards FA, Konnerth A, Sakmann B (1990) Quantal analysis of inhibitory synaptic transmission in the dentate gyrus of rat hippocampal slices: a patch-clamp study. J Physiol 430:213-49 [PubMed] Fidzhugh R (1961) Impulses and physiological states in models of nerve membrane Biophys J 1:445-466 Fitzhugh R (1965) A kinetic model of the conductance changes in nerve membrane J Cell Comp Physiol 66:111-118 Goldman L, Hahin R (1979) Sodium conductance kinetics. Solution of the general, linear three-state model Cell Biophys 1:345-354 Hagiwara N, Irisawa H (1989) Modulation by intracellular Ca2+ of the hyperpolarization-activated inward current in rabbit single sino-atrial node cells. J Physiol 409:121-41 [PubMed] Harris AL, Spray DC, Bennett MV (1981) Kinetic properties of a voltage-dependent junctional conductance. J Gen Physiol 77:95-117 [PubMed] Hess SD, Doroshenko PA, Augustine GJ (1993) A functional role for GTP-binding proteins in synaptic vesicle cycling. Science 259:1169-72 [PubMed] Hessler NA, Shirke AM, Malinow R (1993) The probability of transmitter release at a mammalian central synapse. Nature 366:569-72 [Journal] [PubMed] Hestrin S (1992) Activation and desensitization of glutamate-activated channels mediating fast excitatory synaptic currents in the visual cortex. Neuron 9:991-9 [PubMed] Hille B (1992) Potassium channels and chloride channels Ionic Channels of Excitable Membrane, Hille B, ed. pp.115 Hindmarsh JL, Rose RM (1982) A model of the nerve impulse using two first-order differential equations. Nature 296:162-4 [PubMed] Hines M (1989) A program for simulation of nerve equations with branching geometries. Int J Biomed Comput 24:55-68 [PubMed] Hines M (1993) NEURON--a program for simulation of nerve equations. Neural Systems: Analysis And Modeling, Eeckman F, ed. pp.127 HODGKIN AL, HUXLEY AF (1952) A quantitative description of membrane current and its application to conduction and excitation in nerve. J Physiol 117:500-44 [Journal] [PubMed] Holmes WR, Levy WB (1990) Insights into associative long-term potentiation from computational models of NMDA receptor-mediated calcium influx and intracellular calcium concentration changes. J Neurophysiol 63:1148-68 [Journal] [PubMed] Horn R, Lange K (1983) Estimating kinetic constants from single channel data. Biophys J 43:207-23 [Journal] [PubMed] Horn R, Patlak J, Stevens CF (1981) Sodium channels need not open before they inactivate. Nature 291:426-7 [PubMed] Horn R, Vandenberg CA (1984) Statistical properties of single sodium channels. J Gen Physiol 84:505-34 [PubMed] Innis RB, Aghajanian GK (1987) Pertussis toxin blocks autoreceptor-mediated inhibition of dopaminergic neurons in rat substantia nigra. Brain Res 411:139-43 [PubMed] Inoue M, Nakajima S, Nakajima Y (1988) Somatostatin induces an inward rectification in rat locus coeruleus neurones through a pertussis toxin-sensitive mechanism. J Physiol 407:177-98 [PubMed] Jahr CE, Stevens CF (1990) Voltage dependence of NMDA-activated macroscopic conductances predicted by single-channel kinetics. J Neurosci 10:3178-82 [PubMed] Jahr CE, Stevens CF (1990) A quantitative description of NMDA receptor-channel kinetic behavior. J Neurosci 10:1830-7 [PubMed] Jan LY, Jan YN (1992) Structural elements involved in specific K+ channel functions. Annu Rev Physiol 54:537-55 [Journal] [PubMed] Johnson FH, Eyring H, Stover BJ (1974) The Theory Of Rate Processes In Biology And Medicine Katz B (1966) Nerve, Muscle, and Synapse :193 Keller BU, Hartshorne RP, Talvenheimo JA, Catterall WA, Montal M (1986) Sodium channels in planar lipid bilayers. Channel gating kinetics of purified sodium channels modified by batrachotoxin. J Gen Physiol 88:1-23 [PubMed] Kepler TB, Abbott LF, Marder E (1992) Reduction of conductance-based neuron models. Biol Cybern 66:381-7 [PubMed] Kienker P (1989) Equivalence of aggregated Markov models of ion-channel gating. Proc R Soc Lond B Biol Sci 236:269-309 [Journal] [PubMed] Koch C, Segev I (1989) Methods In Neuronal Modeling, Koch C:Segev I, ed. Kohn MC (1989) Computer modeling at the National Biomedical Simulation Resource Computers And Mathematics With Applications 18:919-924 Krinskii VI, Kokoz IuM (1973) [Analysis of the equations of excitable membranes. I. Reduction of the Hodgkins-Huxley equations to a 2d order system]. Biofizika 18:506-11 [PubMed] Labarca P, Coronado R, Miller C (1980) Thermodynamic and kinetic studies of the gating behavior of a K+-selective channel from the sarcoplasmic reticulum membrane. J Gen Physiol 76:397-24 [PubMed] Labarca P, Rice JA, Fredkin DR, Montal M (1985) Kinetic analysis of channel gating. Application to the cholinergic receptor channel and the chloride channel from Torpedo californica. Biophys J 47:469-78 [Journal] [PubMed] Lamb TD, Pugh EN (1992) A quantitative account of the activation steps involved in phototransduction in amphibian photoreceptors. J Physiol 449:719-58 [PubMed] Latorre R, Oberhauser A, Labarca P, Alvarez O (1989) Varieties of calcium-activated potassium channels. Annu Rev Physiol 51:385-99 [Journal] [PubMed] LeMasson G, Marder E, Abbott LF (1993) Activity-dependent regulation of conductances in model neurons. Science 259:1915-7 [PubMed] Lester RA, Jahr CE (1992) NMDA channel behavior depends on agonist affinity. J Neurosci 12:635-43 [PubMed] Levitt DG (1989) Continuum model of voltage-dependent gating. Macroscopic conductance, gating current, and single-channel behavior. Biophys J 55:489-98 [Journal] [PubMed] Liebovitch LS, Sullivan JM (1987) Fractal analysis of a voltage-dependent potassium channel from cultured mouse hippocampal neurons. Biophys J 52:979-88 [Journal] [PubMed] Lisman J (1989) A mechanism for the Hebb and the anti-Hebb processes underlying learning and memory. Proc Natl Acad Sci U S A 86:9574-8 [PubMed] Llinás R, Steinberg IZ, Walton K (1981) Relationship between presynaptic calcium current and postsynaptic potential in squid giant synapse. Biophys J 33:323-51 [Journal] [PubMed] Llinás RR (1988) The intrinsic electrophysiological properties of mammalian neurons: insights into central nervous system function. Science 242:1654-64 [PubMed] Lopez HS (1992) Kinetics of G protein-mediated modulation of the potassium M-current in bullfrog sympathetic neurons. Neuron 8:725-36 [PubMed] Lopez HS, Brown AM (1992) Neuromodulation. Curr Opin Neurobiol 2:317-22 [PubMed] Lytton WW, Sejnowski TJ (1991) Simulations of cortical pyramidal neurons synchronized by inhibitory interneurons. J Neurophysiol 66:1059-79 [Journal] [PubMed] MacDonald RL, Twyman RE (1992) Kinetic properties and regulation of GABAA receptor channels. Ion Channels 3:315-43 [PubMed] Magleby KL, Stevens CF (1972) A quantitative description of end-plate currents. J Physiol 223:173-97 [PubMed] Marom S, Abbott LF (1994) Modeling state-dependent inactivation of membrane currents. Biophys J 67:515-20 [Journal] [PubMed] Mayer ML, Westbrook GL, Guthrie PB (1984) Voltage-dependent block by Mg2+ of NMDA responses in spinal cord neurones. Nature 309:261-3 [PubMed] McCormick DA (1992) Neurotransmitter actions in the thalamus and cerebral cortex and their role in neuromodulation of thalamocortical activity. Prog Neurobiol 39:337-88 [PubMed] McCormick DA, Huguenard JR (1992) A model of the electrophysiological properties of thalamocortical relay neurons. J Neurophysiol 68:1384-400 [Journal] [PubMed] McCormick DA, Williamson A (1991) Modulation of neuronal firing mode in cat and guinea pig LGNd by histamine: possible cellular mechanisms of histaminergic control of arousal. J Neurosci 11:3188-99 [PubMed] McManus OB, Weiss DS, Spivak CE, Blatz AL, Magleby KL (1988) Fractal models are inadequate for the kinetics of four different ion channels. Biophys J 54:859-70 [Journal] [PubMed] Migliore M, Ayala GF (1993) A kinetic model of short and long term potentiation Neural Comput 5:636-647 Mihara S, Nishi S (1989) Muscarinic excitation and inhibition of neurons in the submucous plexus of the guinea-pig caecum. Neuroscience 31:247-57 [PubMed] Millhauser GL, Salpeter EE, Oswald RE (1988) Diffusion models of ion-channel gating and the origin of power-law distributions from single-channel recording. Proc Natl Acad Sci U S A 85:1503-7 [PubMed] MONOD J, CHANGEUX JP, JACOB F (1963) Allosteric proteins and cellular control systems. J Mol Biol 6:306-29 [PubMed] Neer EJ, Clapham DE (1988) Roles of G protein subunits in transmembrane signalling. Nature 333:129-34 [Journal] [PubMed] Neher E (1992) Ion channels for communication between and within cells. Science 256:498-502 [PubMed] Neher E, Sakmann B (1976) Single-channel currents recorded from membrane of denervated frog muscle fibres. Nature 260:799-802 [PubMed] Neher E, Stevens CF (1979) Voltage-driven conformational changes in intrinsic membrane proteins Schmitt Fo:worden Fg, Neurosciences THEFOURTHSTUDYPROGRAM, ed. pp.623 Nicoll RA (1988) The coupling of neurotransmitter receptors to ion channels in the brain. Science 241:545-51 [PubMed] North RA (1989) Drug receptors and the inhibition of nerve cells Brit J Pharmacol 98:13-28 North RA, Williams JT, Surprenant A, Christie MJ (1987) Mu and delta receptors belong to a family of receptors that are coupled to potassium channels. Proc Natl Acad Sci U S A 84:5487-91 [PubMed] Nowak L, Bregestovski P, Ascher P, Herbet A, Prochiantz A (1984) Magnesium gates glutamate-activated channels in mouse central neurones. Nature 307:462-5 [PubMed] Otis TS, De Koninck Y, Mody I (1993) Characterization of synaptically elicited GABAB responses using patch-clamp recordings in rat hippocampal slices. J Physiol 463:391-407 [PubMed] Otis TS, Mody I (1992) Modulation of decay kinetics and frequency of GABAA receptor-mediated spontaneous inhibitory postsynaptic currents in hippocampal neurons. Neuroscience 49:13-32 [PubMed] Partridge LD, Swandulla D (1988) Calcium-activated non-specific cation channels. Trends Neurosci 11:69-72 [PubMed] Perkel DH, Mulloney B, Budelli RW (1981) Quantitative methods for predicting neuronal behavior. Neuroscience 6:823-37 [PubMed] Perozo E, Bezanilla F (1990) Phosphorylation affects voltage gating of the delayed rectifier K+ channel by electrostatic interactions. Neuron 5:685-90 [PubMed] Press WH, Flannery BP, Teukolsky SA, Vetterling WT (1986) Numerical Recipes The Art Of Scientic Computing, University CAMBRIDGEPRESS, ed. Raman IM, Trussell LO (1992) The kinetics of the response to glutamate and kainate in neurons of the avian cochlear nucleus. Neuron 9:173-86 [PubMed] Rinzel J (1985) Excitation dynamics: insights from simplified membrane models. Fed Proc 44:2944-6 [PubMed] Rosenmund C, Clements JD, Westbrook GL (1993) Nonuniform probability of glutamate release at a hippocampal synapse. Science 262:754-7 [PubMed] Ross EM (1989) Signal sorting and amplification through G protein-coupled receptors. Neuron 3:141-52 [PubMed] Sakmann B (1992) Elementary steps in synaptic transmission revealed by currents through single ion channels. Science 256:503-12 [PubMed] Sakmann B, Neher E (1983) Single-channel Recording, Sakmann B:Neher E, ed. Sansom MS, Ball FG, Kerry CJ, McGee R, Ramsey RL, Usherwood PN (1989) Markov, fractal, diffusion, and related models of ion channel gating. A comparison with experimental data from two ion channels. Biophys J 56:1229-43 [Journal] [PubMed] Sasaki K, Sato M (1987) A single GTP-binding protein regulates K+-channels coupled with dopamine, histamine and acetylcholine receptors. Nature 325:259-62 [Journal] [PubMed] Sigworth FJ, Neher E (1980) Single Na+ channel currents observed in cultured rat muscle cells. Nature 287:447-9 [PubMed] Silver RA, Traynelis SF, Cull-Candy SG (1992) Rapid-time-course miniature and evoked excitatory currents at cerebellar synapses in situ. Nature 355:163-6 [Journal] [PubMed] Skene JH (1990) GAP-43 as a 'calmodulin sponge' and some implications for calcium signalling in axon terminals. Neurosci Res Suppl 13:S112-25 [PubMed] Srinivasan R, Chiel HJ (1993) Fast calculation of synaptic conductances Neural Comput 5:200-204 Standley C, Norris TM, Ramsey RL, Usherwood PN (1993) Gating kinetics of the quisqualate-sensitive glutamate receptor of locust muscle studied using agonist concentration jumps and computer simulations. Biophys J 65:1379-86 [Journal] [PubMed] Staubli U, Ambros-Ingerson J, Lynch G (1992) Receptor changes and LTP: an analysis using aniracetam, a drug that reversibly modifies glutamate (AMPA) receptors. Hippocampus 2:49-57 [Journal] [PubMed] Steriade M, Mccarley RW (1990) Brainstem Control Of Wakefulness And Sleep Steriade M, McCormick DA, Sejnowski TJ (1993) Thalamocortical oscillations in the sleeping and aroused brain. Science 262:679-85 [PubMed] Stevens CF (1978) Interactions between intrinsic membrane protein and electric field. An approach to studying nerve excitability. Biophys J 22:295-306 [Journal] [PubMed] Strassberg AF, Defelice LJ (1993) Limitations of the Hodgkin-Huxley formalism: eects of single channel kinetics on transmembrane voltage dynamics Neural Comput 5:843-855 Surprenant A, North RA (1988) Mechanism of synaptic inhibition by noradrenaline acting at alpha 2-adrenoceptors. Proc R Soc Lond B Biol Sci 234:85-114 [Journal] [PubMed] Szabo G, Otero AS (1989) Muscarinic activation of potassium channels in cardiac myocytes: kinetic aspects of G protein function in vivo. Trends Pharmacol Sci Suppl:46-9 [PubMed] Thalmann RH (1988) Evidence that guanosine triphosphate (GTP)-binding proteins control a synaptic response in brain: effect of pertussis toxin and GTP gamma S on the late inhibitory postsynaptic potential of hippocampal CA3 neurons. J Neurosci 8:4589-602 [PubMed] Toro L, Stefani E (1991) Calcium-activated K+ channels: metabolic regulation. J Bioenerg Biomembr 23:561-76 [PubMed] Traynelis SF, Silver RA, Cull-Candy SG (1993) Estimated conductance of glutamate receptor channels activated during EPSCs at the cerebellar mossy fiber-granule cell synapse. Neuron 11:279-89 [PubMed] Trussell LO, Jackson MB (1987) Dependence of an adenosine-activated potassium current on a GTP-binding protein in mammalian central neurons. J Neurosci 7:3306-16 [PubMed] Unwin N (1989) The structure of ion channels in membranes of excitable cells. Neuron 3:665-76 [PubMed] Vandenberg CA, Bezanilla F (1991) A sodium channel gating model based on single channel, macroscopic ionic, and gating currents in the squid giant axon. Biophys J 60:1511-33 [Journal] [PubMed] VanDongen AM, Codina J, Olate J, Mattera R, Joho R, Birnbaumer L, Brown AM (1988) Newly identified brain potassium channels gated by the guanine nucleotide binding protein Go. Science 242:1433-7 [PubMed] Walaas SI, Greengard P (1991) Protein phosphorylation and neuronal function. Pharmacol Rev 43:299-349 [PubMed] Wang XJ, Rinzel J (1992) Alternating and synchronous rhythms in reciprocally inhibitory model neurons Neural Comput 4:84-97 Wathey JC, Nass MM, Lester HA (1979) Numerical reconstruction of the quantal event at nicotinic synapses. Biophys J 27:145-64 [Journal] [PubMed] Williams JT, Colmers WF, Pan ZZ (1988) Voltage- and ligand-activated inwardly rectifying currents in dorsal raphe neurons in vitro. J Neurosci 8:3499-506 [PubMed] Xiang Z, Greenwood AC, Brown T (1992) Measurement and analysis of hippocampal mossy-fiber synapses Soc Neurosci Abstr 18:1350 Yamada WM, Koch C, Adams PR (1989) Multiple channels and calcium dynamics Methods In Neuronal Modeling: From Synapses To Networks, Koch C:Segev I, ed. pp.97 Yamada WM, Zucker RS (1992) Time course of transmitter release calculated from simulations of a calcium diffusion model. Biophys J 61:671-82 [Journal] [PubMed]
Zador A, Koch C, Brown TH (1990) Biophysical model of a Hebbian synapse. Proc Natl Acad Sci U S A 87:6718-22 [PubMed] | Andreozzi E, Carannante I, D'Addio G, Cesarelli M, Balbi P (2019) Phenomenological models of NaV1.5. A side by side, procedural, hands-on comparison between Hodgkin-Huxley and kinetic formalisms Scientific Reports 9:17493 [Journal] [PubMed]
Anwar H, Hepburn I, Nedelescu H, Chen W, De Schutter E (2013) Stochastic calcium mechanisms cause dendritic calcium spike variability. J Neurosci 33:15848-67 [Journal] [PubMed]
Anwar H, Roome CJ, Nedelescu H, Chen W, Kuhn B, De Schutter E (2014) Dendritic diameters affect the spatial variability of intracellular calcium dynamics in computer models. Front Cell Neurosci 8:168 [Journal] [PubMed]
Archie KA, Mel BW (2000) A model for intradendritic computation of binocular disparity. Nat Neurosci 3:54-63 [Journal] [PubMed]
Ariav G, Polsky A, Schiller J (2003) Submillisecond precision of the input-output transformation function mediated by fast sodium dendritic spikes in basal dendrites of CA1 pyramidal neurons. J Neurosci 23:7750-8 [PubMed] Arsiero M, Lüscher HR, Lundstrom BN, Giugliano M (2007) The impact of input fluctuations on the frequency-current relationships of layer 5 pyramidal neurons in the rat medial prefrontal cortex. J Neurosci 27:3274-84 [Journal] [PubMed]
Balbi P, Massobrio P, Hellgren Kotaleski J (2017) A single Markov-type kinetic model accounting for the macroscopic currents of all human voltage-gated sodium channel isoforms. PLoS Comput Biol 13:e1005737 [Journal] [PubMed]
Bazhenov M, Stopfer M, Rabinovich M, Abarbanel HD, Sejnowski TJ, Laurent G (2001) Model of cellular and network mechanisms for odor-evoked temporal patterning in the locust antennal lobe. Neuron 30:569-81 [PubMed] Bazhenov M, Stopfer M, Rabinovich M, Huerta R, Abarbanel HD, Sejnowski TJ, Laurent G (2001) Model of transient oscillatory synchronization in the locust antennal lobe. Neuron 30:553-67 [PubMed] Bazhenov M, Timofeev I, Steriade M, Sejnowski T (2000) Spiking-bursting activity in the thalamic reticular nucleus initiates sequences of spindle oscillations in thalamic networks. J Neurophysiol 84:1076-87 [Journal] [PubMed] Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (1998) Computational models of thalamocortical augmenting responses. J Neurosci 18:6444-65 [Journal] [PubMed]
Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (2002) Model of thalamocortical slow-wave sleep oscillations and transitions to activated States. J Neurosci 22:8691-704 [Journal] [PubMed]
Bertrand PP, Thomas EA, Kunze WA, Bornstein JC (2000) A simple mathematical model of second-messenger mediated slow excitatory postsynaptic potentials. J Comput Neurosci 8:127-42 [PubMed] Brette R, Goodman DF (2011) Vectorized algorithms for spiking neural network simulation. Neural Comput 23:1503-35 [Journal] [PubMed]
Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, Goodman PH, Harris FC, Zirpe M, Natschläger T, Pecevski D, Ermentrout B, Djurfeldt M, Lansner A, Rochel O, Vieville T, Muller E, Davison AP, El Boustani S, Destexhe A (2007) Simulation of networks of spiking neurons: a review of tools and strategies. J Comput Neurosci 23:349-98 [Journal] [PubMed]
Carey RM, Sherwood WE, Shipley MT, Borisyuk A, Wachowiak M (2015) Role of intraglomerular circuits in shaping temporally structured responses to naturalistic inhalation-driven sensory input to the olfactory bulb. J Neurophysiol 113:3112-29 [Journal] [PubMed]
Carnevale NT, Morse TM (1996-2009) Research reports that have used NEURON Web published citations at the NEURON website [Journal] Cattani A, Solinas S, Canuto C (2016) A Hybrid Model for the Computationally-Efficient Simulation of the Cerebellar Granular Layer. Front Comput Neurosci 10:30 [Journal] [PubMed] Cisi RR, Kohn AF (2008) Simulation system of spinal cord motor nuclei and associated nerves and muscles, in a Web-based architecture. J Comput Neurosci 25:520-42 [Journal] [PubMed]
D'Angelo E, Nieus T, Bezzi M, Arleo A, Coenen O (2005) (chapter) Modeling synaptic transmission and quantifying information transfer in the granular layer of the cerebellum Computational Intelligence and Bioinspired Systems, Proceedings 3512:107-114 [Journal] Debay D, Wolfart J, Le Franc Y, Le Masson G, Bal T (2004) Exploring spike transfer through the thalamus using hybrid artificial-biological neuronal networks. J Physiol Paris 98:540-58 [Journal] [PubMed] Destexhe A (1997) Conductance-based integrate-and-fire models. Neural Comput 9:503-14 [PubMed] Destexhe A, Bal T, McCormick DA, Sejnowski TJ (1996) Ionic mechanisms underlying synchronized oscillations and propagating waves in a model of ferret thalamic slices. J Neurophysiol 76:2049-70 [Journal] [PubMed]
Destexhe A, Contreras D, Sejnowski TJ, Steriade M (1994) A model of spindle rhythmicity in the isolated thalamic reticular nucleus. J Neurophysiol 72:803-18 [Journal] [PubMed]
Destexhe A, Huguenard JR (2000) Nonlinear thermodynamic models of voltage-dependent currents. J Comput Neurosci 9:259-70 [PubMed] Destexhe A, Mainen Z, Sejnowski T (1995) Fast Kinetic Models for Simulating AMPA, NMDA, GABAA and GABAB Receptors The Neurobiology of Computation, Bower J, ed. pp.9 [Journal]
Destexhe A, Rudolph M (2004) Extracting information from the power spectrum of synaptic noise. J Comput Neurosci 17:327-45 [Journal] [PubMed] Destexhe A, Rudolph M (2005) Extracting information from the power spectrum of voltage noise Neurocomputing 65:901-906 [Journal] Destexhe A, Sejnowski TJ (1995) G protein activation kinetics and spillover of gamma-aminobutyric acid may account for differences between inhibitory responses in the hippocampus and thalamus. Proc Natl Acad Sci U S A 92:9515-9 [PubMed] Deyo SN, Lytton WW (1997) Inhibition can disrupt hypersynchrony in model neuronal networks. Prog Neuropsychopharmacol Biol Psychiatry 21:735-50 [PubMed] Edin F, Klingberg T, Stödberg T, Tegnér J (2007) Fronto-parietal connection asymmetry regulates working memory distractibility. J Integr Neurosci 6:567-96 [Journal] [PubMed]
Emri Z, Antal K, Crunelli V (2003) The impact of corticothalamic feedback on the output dynamics of a thalamocortical neurone model: the role of synapse location and metabotropic glutamate receptors. Neuroscience 117:229-39 [PubMed] Ermentrout GB, Terman DH (2010) Mathematical Foundations of Neuroscience Interdisciplinary Applied Mathematics, Antman SS:Marsden JE:Sirovich L:Wiggins, ed. pp.1 [Journal]
Fellous JM, Rudolph M, Destexhe A, Sejnowski TJ (2003) Synaptic background noise controls the input/output characteristics of single cells in an in vitro model of in vivo activity. Neuroscience 122:811-29 [PubMed] Fransen E (2005) A synapse which can switch from inhibitory to excitatory and back Neurocomputing 65-66:39-45 [Journal] Fröhlich F, Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (2006) Slow state transitions of sustained neural oscillations by activity-dependent modulation of intrinsic excitability. J Neurosci 26:6153-62 [Journal] [PubMed] Golomb D, Shedmi A, Curtu R, Ermentrout GB (2006) Persistent synchronized bursting activity in cortical tissues with low magnesium concentration: a modeling study. J Neurophysiol 95:1049-67 [Journal] [PubMed]
Gottschalk A, Haney P (2003) Computational aspects of anesthetic action in simple neural models. Anesthesiology 98:548-64 [PubMed] Hadipour-Niktarash A (2006) A computational model of how an interaction between the thalamocortical and thalamic reticular neurons transforms the low-frequency oscillations of the globus pallidus. J Comput Neurosci 20:299-320 [Journal] [PubMed]
Hahn PJ, McIntyre CC (2010) Modeling shifts in the rate and pattern of subthalamopallidal network activity during deep brain stimulation. J Comput Neurosci 28:425-41 [Journal] [PubMed]
Halnes G, Mäki-Marttunen T, Keller D, Pettersen KH, Andreassen OA, Einevoll GT (2016) Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue. PLoS Comput Biol 12:e1005193 [Journal] [PubMed]
Harris KD, Dashevskiy T, Mendoza J, Garcia AJ, Ramirez JM, Shea-Brown E (2017) Different roles for inhibition in the rhythm-generating respiratory network. J Neurophysiol 118:2070-2088 [Journal] [PubMed]
Hay E, Hill S, Schürmann F, Markram H, Segev I (2011) Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS Comput Biol 7:e1002107 [Journal] [PubMed] Hay E, Segev I (2015) Dendritic Excitability and Gain Control in Recurrent Cortical Microcircuits. Cereb Cortex 25:3561-71 [Journal] [PubMed]
Hines ML, Carnevale NT (2003) Personal Communication of NEURON bibliography Huertas MA, Groff JR, Smith GD (2005) Feedback inhibition and throughput properties of an integrate-and-fire-or-burst network model of retinogeniculate transmission. J Comput Neurosci 19:147-80 [Journal] [PubMed] Jiang N, Englehart KB, Parker PA (2007) A simulation method for the firing sequences of motor units. J Electromyogr Kinesiol 17:527-34 [Journal] [PubMed]
Kilinc D, Demir A (2017) Noise in Neuronal and Electronic Circuits: A General Modeling Framework and Non-Monte Carlo Simulation Techniques. IEEE Trans Biomed Circuits Syst 11:958-974 [Journal] [PubMed]
Kilinc D, Demir A (2018) Spike timing precision of neuronal circuits. J Comput Neurosci 44:341-362 [Journal] [PubMed]
Kilinc D,Demir A (2015) Simulation of noise in neurons and neuronal circuits Proceedings of the IEEE/ACM international conference on computer-aided design (ICCAD) :589-596 [Journal]
Krishnan GP, Filatov G, Shilnikov A, Bazhenov M (2015) Electrogenic properties of the Na?/K? ATPase control transitions between normal and pathological brain states. J Neurophysiol 113:3356-74 [Journal] [PubMed]
Kufel DS, Wojcik GM (2018) Analytical modelling of temperature effects on an AMPA-type synapse. J Comput Neurosci 44:379-391 [Journal] [PubMed]
Le Masson G, Przedborski S, Abbott LF (2014) A computational model of motor neuron degeneration. Neuron 83:975-88 [Journal] [PubMed] Lee CC, Anton M, Poon CS, McRae GJ (2009) A kinetic model unifying presynaptic short-term facilitation and depression. J Comput Neurosci 26:459-73 [Journal] [PubMed]
Lin X, Hant J (2001) Computer-simulation studies on roles of potassium currents in neurotransmission of the auditory nerve. Hear Res 152:90-9 [PubMed] Linaro D, Storace M, Giugliano M (2011) Accurate and fast simulation of channel noise in conductance-based model neurons by diffusion approximation. PLoS Comput Biol 7:e1001102 [Journal] [PubMed]
Liu Z, Ren J, Murphy TH (2003) Decoding of synaptic voltage waveforms by specific classes of recombinant high-threshold Ca(2+) channels. J Physiol 553:473-88 [Journal] [PubMed] Lopreore CL, Bartol TM, Coggan JS, Keller DX, Sosinsky GE, Ellisman MH, Sejnowski TJ (2008) Computational modeling of three-dimensional electrodiffusion in biological systems: application to the node of Ranvier. Biophys J 95:2624-35 [Journal] [PubMed] Lytton WW (1997) Computer model of clonazepam's effect in thalamic slice. Neuroreport 8:3339-43 [Journal] [PubMed]
Lytton WW (1998) Adapting a feedforward heteroassociative network to Hodgkin-Huxley dynamics. J Comput Neurosci 5:353-64 [PubMed]
Lytton WW, Contreras D, Destexhe A, Steriade M (1997) Dynamic interactions determine partial thalamic quiescence in a computer network model of spike-and-wave seizures. J Neurophysiol 77:1679-96 [Journal] [PubMed]
Lytton WW, Hellman KM, Sutula TP (1998) Computer models of hippocampal circuit changes of the kindling model of epilepsy. Artif Intell Med 13:81-97 [PubMed] Lytton WW, Hines ML (2005) Independent variable time-step integration of individual neurons for network simulations. Neural Comput 17:903-21 [Journal] [PubMed]
Mahapatra C, Brain KL, Manchanda R (2018) A biophysically constrained computational model of the action potential of mouse urinary bladder smooth muscle. PLoS One 13:e0200712 [Journal] [PubMed]
McIntyre CC, Grill WM, Sherman DL, Thakor NV (2004) Cellular effects of deep brain stimulation: model-based analysis of activation and inhibition. J Neurophysiol 91:1457-69 [Journal] [PubMed] Mel BW, Ruderman DL, Archie KA (1998) Translation-invariant orientation tuning in visual "complex" cells could derive from intradendritic computations. J Neurosci 18:4325-34 [PubMed] Miocinovic S, Parent M, Butson CR, Hahn PJ, Russo GS, Vitek JL, McIntyre CC (2006) Computational analysis of subthalamic nucleus and lenticular fasciculus activation during therapeutic deep brain stimulation. J Neurophysiol 96:1569-80 [Journal] [PubMed]
Mo CH, Gu M, Koch C (2004) A learning rule for local synaptic interactions between excitation and shunting inhibition. Neural Comput 16:2507-32 [Journal] [PubMed] Morozova EO, Myroshnychenko M, Zakharov D, di Volo M, Gutkin B, Lapish CC, Kuznetsov A (2016) Contribution of synchronized GABAergic neurons to dopaminergic neuron firing and bursting. J Neurophysiol 116:1900-1923 [Journal] [PubMed]
Nevian T, Larkum ME, Polsky A, Schiller J (2007) Properties of basal dendrites of layer 5 pyramidal neurons: a direct patch-clamp recording study. Nat Neurosci 10:206-14 [Journal] [PubMed]
Nieus T, Sola E, Mapelli J, Saftenku E, Rossi P, D'Angelo E (2006) LTP regulates burst initiation and frequency at mossy fiber-granule cell synapses of rat cerebellum: experimental observations and theoretical predictions. J Neurophysiol 95:686-99 [Journal] [PubMed]
Oprisan SA (2017) Predicting the Existence and Stability of Phase-Locked Mode in Neural Networks Using Generalized Phase-Resetting Curve. Neural Comput 29:2030-2054 [Journal] [PubMed] Poirazi P, Brannon T, Mel BW (2003ab-sup) Online Supplement: About the Model Neuron 37 Online:1-20 [Journal]
Rotstein HG, Oppermann T, White JA, Kopell N (2006) The dynamic structure underlying subthreshold oscillatory activity and the onset of spikes in a model of medial entorhinal cortex stellate cells. J Comput Neurosci 21:271-92 [Journal] [PubMed] Rudolph M, Destexhe A (2001) Correlation detection and resonance in neural systems with distributed noise sources. Phys Rev Lett 86:3662-5 [Journal] [PubMed] Rudolph M, Destexhe A (2004) Inferring network activity from synaptic noise. J Physiol Paris 98:452-66 [Journal] [PubMed] Rudolph M, Destexhe A (2006) Analytical integrate-and-fire neuron models with conductance-based dynamics for event-driven simulation strategies. Neural Comput 18:2146-210 [Journal] [PubMed] Rulkov NF, Timofeev I, Bazhenov M (2004) Oscillations in large-scale cortical networks: map-based model. J Comput Neurosci 17:203-23 [Journal] [PubMed]
Saraga F, Wu CP, Zhang L, Skinner FK (2003) Active dendrites and spike propagation in multi-compartment models of oriens-lacunosum/moleculare hippocampal interneurons. J Physiol 552:673-89 [Journal] [PubMed]
Shao J, Lai D, Meyer U, Luksch H, Wessel R (2009) Generating oscillatory bursts from a network of regular spiking neurons without inhibition. J Comput Neurosci 27:591-606 [Journal] [PubMed]
Shelley MJ, Tao L (2001) Efficient and accurate time-stepping schemes for integrate-and-fire neuronal networks. J Comput Neurosci 11:111-9 [PubMed] Sidiropoulou K, Poirazi P (2012) Predictive features of persistent activity emergence in regular spiking and intrinsic bursting model neurons. PLoS Comput Biol 8:e1002489 [Journal] [PubMed]
Sterratt D, Graham B, Gillies A, Willshaw D (2011) Principles of Computational Modelling in Neuroscience, Cambridge University Press :1-401 [Journal]
Stewart RD, Bair W (2009) Spiking neural network simulation: numerical integration with the Parker-Sochacki method. J Comput Neurosci 27:115-33 [Journal] [PubMed]
Stiefel KM, Wespatat V, Singer W, Tennigkeit F (2001) A computational model of the interaction of membrane potential oscillations with inhibitory synaptic input in cortical cells Neurocomputing 38:389-395 Teka W, Stockton D, Santamaria F (2016) Power-law dynamics of membrane
conductances increase spiking diversity in a Hodgkin-Huxley model PLoS Comput Biol 12(3):e1004776 [Journal]
Thomas E, Lytton WW (1998) Computer model of antiepileptic effects mediated by alterations in GABA(A)-mediated inhibition. Neuroreport 9:691-6 [PubMed] van Elburg RA, van Ooyen A (2009) Generalization of the event-based Carnevale-Hines integration scheme for integrate-and-fire models. Neural Comput 21:1913-30 [Journal] [PubMed]
Willms AR (2002) NEUROFIT: software for fitting Hodgkin-Huxley models to voltage-clamp data. J Neurosci Methods 121:139-50 [PubMed]
Zavada A, Buckley CL, Martinez D, Rospars JP, Nowotny T (2011) Competition-based model of pheromone component ratio detection in the moth. PLoS One 6:e16308 [Journal] [PubMed]
Zhu JJ, Uhlrich DJ, Lytton WW (1999) Burst firing in identified rat geniculate interneurons. Neuroscience 91:1445-60 [PubMed]
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Destexhe A, Mainen Z, Sejnowski TJ (1994) An efficient method for computing synaptic conductances based on a kinetic model of receptor binding Neural Comput 6:14-18
References and models cited by this paper | References and models that cite this paper | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Anderson CR, Stevens CF (1973) Voltage clamp analysis of acetylcholine produced end-plate current fluctuations at frog neuromuscular junction. J Physiol 235:655-91 [PubMed] Clements JD, Lester RA, Tong G, Jahr CE, Westbrook GL (1992) The time course of glutamate in the synaptic cleft. Science 258:1498-501 [PubMed] Colquhoun D, Jonas P, Sakmann B (1992) Action of brief pulses of glutamate on AMPA/kainate receptors in patches from different neurones of rat hippocampal slices. J Physiol 458:261-87 [PubMed] Hines M (1993) NEURON--a program for simulation of nerve equations. Neural Systems: Analysis And Modeling, Eeckman F, ed. pp.127 Perkel DH, Mulloney B, Budelli RW (1981) Quantitative methods for predicting neuronal behavior. Neuroscience 6:823-37 [PubMed] Rall W (1967) Distinguishing theoretical synaptic potentials computed for different soma-dendritic distributions of synaptic input. J Neurophysiol 30:1138-68 [Journal] [PubMed] Srinivasan R, Chiel HJ (1993) Fast calculation of synaptic conductances Neural Comput 5:200-204 | Acker CD, Kopell N, White JA (2003) Synchronization of strongly coupled excitatory neurons: relating network behavior to biophysics. J Comput Neurosci 15:71-90 [PubMed] Antunes G, Faria da Silva SF, Simoes de Souza FM (2018) Mirror Neurons Modeled Through Spike-Timing-Dependent Plasticity are Affected by Channelopathies Associated with Autism Spectrum Disorder. Int J Neural Syst 28:1750058 [Journal] [PubMed]
Badoual M, Zou Q, Davison AP, Rudolph M, Bal T, Frégnac Y, Destexhe A (2006) Biophysical and phenomenological models of multiple spike interactions in spike-timing dependent plasticity. Int J Neural Syst 16:79-97 [Journal] [PubMed]
Baker PM, Pennefather PS, Orser BA, Skinner FK (2002) Disruption of coherent oscillations in inhibitory networks with anesthetics: role of GABA(A) receptor desensitization. J Neurophysiol 88:2821-33 [Journal] [PubMed] Brette R (2006) Exact simulation of integrate-and-fire models with synaptic conductances. Neural Comput 18:2004-27 [Journal] [PubMed] Brette R, Goodman DF (2011) Vectorized algorithms for spiking neural network simulation. Neural Comput 23:1503-35 [Journal] [PubMed]
Budd JM (2005) Theta oscillations by synaptic excitation in a neocortical circuit model. Proc Biol Sci 272:101-9 [Journal] [PubMed] Buonomano DV (2000) Decoding temporal information: A model based on short-term synaptic plasticity. J Neurosci 20:1129-41 [PubMed] Carnevale NT, Morse TM (1996-2009) Research reports that have used NEURON Web published citations at the NEURON website [Journal] Cazé RD, Jarvis S, Foust AJ, Schultz SR (2017) Dendrites Enable a Robust Mechanism for Neuronal Stimulus Selectivity. Neural Comput 29:2511-2527 [Journal] [PubMed]
Cisi RR, Kohn AF (2008) Simulation system of spinal cord motor nuclei and associated nerves and muscles, in a Web-based architecture. J Comput Neurosci 25:520-42 [Journal] [PubMed]
Contreras D, Destexhe A, Steriade M (1997) Intracellular and computational characterization of the intracortical inhibitory control of synchronized thalamic inputs in vivo. J Neurophysiol 78:335-50 [Journal] [PubMed] Destexhe A (1997) Conductance-based integrate-and-fire models. Neural Comput 9:503-14 [PubMed] Destexhe A (1998) Spike-and-wave oscillations based on the properties of GABAB receptors. J Neurosci 18:9099-111 [PubMed] Destexhe A, Bal T, McCormick DA, Sejnowski TJ (1996) Ionic mechanisms underlying synchronized oscillations and propagating waves in a model of ferret thalamic slices. J Neurophysiol 76:2049-70 [Journal] [PubMed]
Destexhe A, Contreras D, Sejnowski TJ, Steriade M (1994) A model of spindle rhythmicity in the isolated thalamic reticular nucleus. J Neurophysiol 72:803-18 [Journal] [PubMed]
Destexhe A, Contreras D, Steriade M (1998) Mechanisms underlying the synchronizing action of corticothalamic feedback through inhibition of thalamic relay cells. J Neurophysiol 79:999-1016 [Journal] [PubMed]
Destexhe A, Mainen Z, Sejnowski T (1995) Fast Kinetic Models for Simulating AMPA, NMDA, GABAA and GABAB Receptors The Neurobiology of Computation, Bower J, ed. pp.9 [Journal]
Destexhe A, Mainen ZF, Sejnowski TJ (1994) Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism. J Comput Neurosci 1:195-230 [PubMed]
Destexhe A, McCormick DA, Sejnowski TJ (1993) A model for 8-10 Hz spindling in interconnected thalamic relay and reticularis neurons. Biophys J 65:2473-7 [Journal] [PubMed] Destexhe A, Paré D (1999) Impact of network activity on the integrative properties of neocortical pyramidal neurons in vivo. J Neurophysiol 81:1531-47 [Journal] [PubMed]
Destexhe A, Pare D (2000) A combined computational and intracellular study of correlated synaptic bombardment in neocortical pyramidal neurons in vivo Neurocomputing 32:113-119 Destexhe A, Sejnowski TJ (2002) The initiation of bursts in thalamic neurons and the cortical control of thalamic sensitivity. Philos Trans R Soc Lond B Biol Sci 357:1649-57 [Journal] [PubMed] Deyo SN, Lytton WW (1997) Inhibition can disrupt hypersynchrony in model neuronal networks. Prog Neuropsychopharmacol Biol Psychiatry 21:735-50 [PubMed] Elias LA, Watanabe RN, Kohn AF (2014) Spinal mechanisms may provide a combination of intermittent and continuous control of human posture: predictions from a biologically based neuromusculoskeletal model. PLoS Comput Biol 10:e1003944 [Journal] [PubMed]
Fernández de Sevilla D, Fuenzalida M, Porto Pazos AB, Buño W (2007) Selective shunting of the NMDA EPSP component by the slow afterhyperpolarization in rat CA1 pyramidal neurons. J Neurophysiol 97:3242-55 [Journal] [PubMed] Fransen E (2005) A synapse which can switch from inhibitory to excitatory and back Neurocomputing 65-66:39-45 [Journal] Gasparini S, Migliore M, Magee JC (2004) On the initiation and propagation of dendritic spikes in CA1 pyramidal neurons. J Neurosci 24:11046-56 [Journal] [PubMed]
Hahn PJ, McIntyre CC (2010) Modeling shifts in the rate and pattern of subthalamopallidal network activity during deep brain stimulation. J Comput Neurosci 28:425-41 [Journal] [PubMed]
Hines ML, Carnevale NT (2003) Personal Communication of NEURON bibliography Hines ML, Carnevale NT (2004) Discrete event simulation in the NEURON environment. Neurocomputing 58-60:1117-1122 [Journal]
Hô N, Destexhe A (2000) Synaptic background activity enhances the responsiveness of neocortical pyramidal neurons. J Neurophysiol 84:1488-96 [Journal] [PubMed] Johnson MD, McIntyre CC (2008) Quantifying the neural elements activated and inhibited by globus pallidus deep brain stimulation. J Neurophysiol 100:2549-63 [Journal] [PubMed]
Karmarkar UR, Najarian MT, Buonomano DV (2002) Mechanisms and significance of spike-timing dependent plasticity. Biol Cybern 87:373-82 [Journal] [PubMed] Kozloski J, Wagner J (2011) An Ultrascalable Solution to Large-scale Neural Tissue Simulation. Front Neuroinform 5:15 [Journal] [PubMed] Kubota Y, Kondo S, Nomura M, Hatada S, Yamaguchi N, Mohamed AA, Karube F, Lübke J, Kawaguchi Y (2015) Functional effects of distinct innervation styles of pyramidal cells by fast spiking cortical interneurons. Elife [Journal] [PubMed]
Kufel DS, Wojcik GM (2018) Analytical modelling of temperature effects on an AMPA-type synapse. J Comput Neurosci 44:379-391 [Journal] [PubMed]
Li G, Cleland TA (2017) A coupled-oscillator model of olfactory bulb gamma oscillations. PLoS Comput Biol 13:e1005760 [Journal] [PubMed]
Li G, Henriquez C, Fröhlich F (2017) Unified Thalamic Model Generates Multiple Distinct Oscillations with State-dependent Entrainment by Stimulation PLOS Computational Biology 13(10):e1005797 [Journal]
Lytton WW (1998) Adapting a feedforward heteroassociative network to Hodgkin-Huxley dynamics. J Comput Neurosci 5:353-64 [PubMed]
Lytton WW, Hines ML (2005) Independent variable time-step integration of individual neurons for network simulations. Neural Comput 17:903-21 [Journal] [PubMed]
Martínez L, Pérez T, Mirasso CR, Manjarrez E (2007) Stochastic resonance in the motor system: effects of noise on the monosynaptic reflex pathway of the cat spinal cord. J Neurophysiol 97:4007-16 [Journal] [PubMed] McIntyre CC, Grill WM, Sherman DL, Thakor NV (2004) Cellular effects of deep brain stimulation: model-based analysis of activation and inhibition. J Neurophysiol 91:1457-69 [Journal] [PubMed] McTavish TS, Migliore M, Shepherd GM, Hines ML (2012) Mitral cell spike synchrony modulated by dendrodendritic synapse location. Front Comput Neurosci 6:3 [Journal] [PubMed]
Migliore M, Messineo L, Ferrante M (2004) Dendritic Ih selectively blocks temporal summation of unsynchronized distal inputs in CA1 pyramidal neurons. J Comput Neurosci 16:5-13 [PubMed]
Migliore M, Shepherd GM (2008) Dendritic action potentials connect distributed dendrodendritic microcircuits. J Comput Neurosci 24:207-21 [Journal] [PubMed]
Miocinovic S, Parent M, Butson CR, Hahn PJ, Russo GS, Vitek JL, McIntyre CC (2006) Computational analysis of subthalamic nucleus and lenticular fasciculus activation during therapeutic deep brain stimulation. J Neurophysiol 96:1569-80 [Journal] [PubMed]
Moroni M, Biro I, Giugliano M, Vijayan R, Biggin PC, Beato M, Sivilotti LG (2011) Chloride ions in the pore of glycine and GABA channels shape the time course and voltage dependence of agonist currents. J Neurosci 31:14095-106 [Journal] [PubMed]
Naze S, Bernard C, Jirsa V (2015) Computational modeling of seizure dynamics using coupled neuronal networks: factors shaping epileptiform activity. PLoS Comput Biol 11:e1004209 [Journal] [PubMed]
Neymotin SA, Jacobs KM, Fenton AA, Lytton WW (2011) Synaptic information transfer in computer models of neocortical columns. J Comput Neurosci 30:69-84 [Journal] [PubMed]
Paré D, Lang EJ, Destexhe A (1998) Inhibitory control of somatodendritic interactions underlying action potentials in neocortical pyramidal neurons in vivo: an intracellular and computational study. Neuroscience 84:377-402 [PubMed] Portfors CV, Roberts PD (2007) Temporal and frequency characteristics of cartwheel cells in the dorsal cochlear nucleus of the awake mouse. J Neurophysiol 98:744-56 [Journal] [PubMed] Roberts PD (2000) Modeling inhibitory plasticity in the electrosensory system of mormyrid electric fish. J Neurophysiol 84:2035-47 [Journal] [PubMed] Ross MD, Linton SW, Parnas BR (2000) Simulation studies of vestibular macular afferent-discharge patterns using a new, quasi-3-D finite volume method. J Comput Neurosci 8:5-18 [PubMed] Rudolph M, Destexhe A (2001) Correlation detection and resonance in neural systems with distributed noise sources. Phys Rev Lett 86:3662-5 [Journal] [PubMed] Rudolph M, Destexhe A (2003) A fast-conducting, stochastic integrative mode for neocortical neurons in vivo. J Neurosci 23:2466-76 [PubMed] Saraga F, Wu CP, Zhang L, Skinner FK (2003) Active dendrites and spike propagation in multi-compartment models of oriens-lacunosum/moleculare hippocampal interneurons. J Physiol 552:673-89 [Journal] [PubMed]
Sterratt D, Graham B, Gillies A, Willshaw D (2011) Principles of Computational Modelling in Neuroscience, Cambridge University Press :1-401 [Journal]
Stiesberg GR, Reyes MB, Varona P, Pinto RD, Huerta R (2007) Connection topology selection in central pattern generators by maximizing the gain of information. Neural Comput 19:974-93 [Journal] [PubMed] Tabak J, Moore LE (1998) Simulation and parameter estimation study of a simple neuronal model of rhythm generation: role of NMDA and non-NMDA receptors. J Comput Neurosci 5:209-35 [PubMed] Welday AC, Shlifer IG, Bloom ML, Zhang K, Blair HT (2011) Cosine directional tuning of theta cell burst frequencies: evidence for spatial coding by oscillatory interference. J Neurosci 31:16157-76 [Journal] [PubMed]
Yu Y, McTavish TS, Hines ML, Shepherd GM, Valenti C, Migliore M (2013) Sparse distributed representation of odors in a large-scale olfactory bulb circuit. PLoS Comput Biol 9:e1003014 [Journal] [PubMed]
Zavada A, Buckley CL, Martinez D, Rospars JP, Nowotny T (2011) Competition-based model of pheromone component ratio detection in the moth. PLoS One 6:e16308 [Journal] [PubMed]
Zou Q, Bornat Y, Tomas J, Renaud S, Destexhe A (2006) Real-time simulations of networks of Hodgkin-Huxley neurons using analog circuits Neurocomputing 69:1137-1140 Zou Q, Rudolph M, Roy N, Sanchez-Vives M, Contreras D, Destexhe A (2005) Reconstructing synaptic background activity from conductance measurements in vivo. Neurocomputing 65:673-678 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Destexhe A, Mainen Z, Sejnowski T (1995) Fast Kinetic Models for Simulating AMPA, NMDA, GABAA and GABAB Receptors The Neurobiology of Computation, Bower J, ed. pp.9
References and models cited by this paper | References and models that cite this paper | |||||||||||||||||
Bartol TM, Land BR, Salpeter EE, Salpeter MM (1991) Monte Carlo simulation of miniature endplate current generation in the vertebrate neuromuscular junction. Biophys J 59:1290-307 [Journal] [PubMed] Brown AM, Birnbaumer L (1990) Ionic channels and their regulation by G protein subunits. Annu Rev Physiol 52:197-213 [Journal] [PubMed] Brown DA (1990) G-proteins and potassium currents in neurons. Annu Rev Physiol 52:215-42 [Journal] [PubMed] Colquhoun D, Jonas P, Sakmann B (1992) Action of brief pulses of glutamate on AMPA/kainate receptors in patches from different neurones of rat hippocampal slices. J Physiol 458:261-87 [PubMed] Destexhe A, Contreras D, Sejnowski TJ, Steriade M (1994) A model of spindle rhythmicity in the isolated thalamic reticular nucleus. J Neurophysiol 72:803-18 [Journal] [PubMed]
Destexhe A, Mainen Z, Sejnowski TJ (1994) An efficient method for computing synaptic conductances based on a kinetic model of receptor binding Neural Comput 6:14-18 [Journal] Destexhe A, Mainen ZF, Sejnowski TJ (1994) Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism. J Comput Neurosci 1:195-230 [PubMed]
Hessler NA, Shirke AM, Malinow R (1993) The probability of transmitter release at a mammalian central synapse. Nature 366:569-72 [Journal] [PubMed] HODGKIN AL, HUXLEY AF (1952) A quantitative description of membrane current and its application to conduction and excitation in nerve. J Physiol 117:500-44 [Journal] [PubMed] Otis TS, De Koninck Y, Mody I (1993) Characterization of synaptically elicited GABAB responses using patch-clamp recordings in rat hippocampal slices. J Physiol 463:391-407 [PubMed] Rall W (1967) Distinguishing theoretical synaptic potentials computed for different soma-dendritic distributions of synaptic input. J Neurophysiol 30:1138-68 [Journal] [PubMed] Raman IM, Zhang S, Trussell LO (1994) Pathway-specific variants of AMPA receptors and their contribution to neuronal signaling. J Neurosci 14:4998-5010 [PubMed] Xiang Z (1992) Measurement and analysis of hippocampal mossy fiber synapses Soc Neurosci Abstracts 18:1350 | Canavier CC, Landry RS (2006) An increase in AMPA and a decrease in SK conductance increase burst firing by different mechanisms in a model of a dopamine neuron in vivo. J Neurophysiol 96:2549-63 [Journal] [PubMed]
Carnevale NT, Morse TM (1996-2009) Research reports that have used NEURON Web published citations at the NEURON website [Journal] Combe CL, Canavier CC, Gasparini S (2018) Intrinsic Mechanisms of Frequency Selectivity in the Proximal Dendrites of CA1 Pyramidal Neurons. J Neurosci 38:8110-8127 [Journal] [PubMed]
Cui Y, Prokin I, Xu H, Delord B, Genet S, Venance L, Berry H (2016) Endocannabinoid dynamics gate spike-timing dependent depression and potentiation. Elife 5:e13185 [Journal] [PubMed]
Hines ML, Carnevale NT (2001) NEURON: a tool for neuroscientists. Neuroscientist 7:123-35 [Journal] [PubMed]
Hines ML, Carnevale NT (2003) Personal Communication of NEURON bibliography Migliore M, Cannia C, Canavier CC (2008) A modeling study suggesting a possible pharmacological target to mitigate the effects of ethanol on reward-related dopaminergic signaling. J Neurophysiol 99:2703-7 [Journal] [PubMed]
| |||||||||||||||||