Citations for 5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)

Legends: Link to a Model Reference cited by multiple papers

Van Dijck G, Seidl K, Paul O, Ruther P, Van Hulle MM, Maex R (2012) Enhancing the yield of high-density electrode arrays through automated electrode selection. Int J Neural Syst 22:1-19 [PubMed]

References and models cited by this paper

References and models that cite this paper

Aarts AAA,Neves HP,Puers R,Van Hoof C (2008) An interconnect for out-of-plane assembled biomedical probe arrays J. Micromech. Microeng. 18(6):064004
Aarts AAA,Neves HP,Puers R,Van Hoof C (2009) Recent advances in interconnect technology for slim-base biomedical probe arrays Proc. 15th Int. Conf. on Solid-State Sensors, Actuators & Microsystems (Transducers) :1975-1978
Brown EN, Kass RE, Mitra PP (2004) Multiple neural spike train data analysis: state-of-the-art and future challenges. Nat Neurosci 7:456-61 [Journal] [PubMed]
Buzsáki G (2004) Large-scale recording of neuronal ensembles. Nat Neurosci 7:446-51 [Journal] [PubMed]
Buzsáki G, Penttonen M, Nádasdy Z, Bragin A (1996) Pattern and inhibition-dependent invasion of pyramidal cell dendrites by fast spikes in the hippocampus in vivo. Proc Natl Acad Sci U S A 93:9921-5 [PubMed]
Cham JG, Branchaud EA, Nenadic Z, Greger B, Andersen RA, Burdick JW (2005) Semi-chronic motorized microdrive and control algorithm for autonomously isolating and maintaining optimal extracellular action potentials. J Neurophysiol 93:570-9 [Journal] [PubMed]
Cichocki A, Amari S (2002) Adaptive signal processing: Learning algorithms and applications
Cohen BA, Fennigkoh L, Borowicz JK, Hassemer EL (2014) Career imperative. Is it legal? Is it ethical? Conf Proc IEEE Eng Med Biol Soc 2014:2907-10 [Journal] [PubMed]
Colbert CM, Magee JC, Hoffman DA, Johnston D (1997) Slow recovery from inactivation of Na+ channels underlies the activity-dependent attenuation of dendritic action potentials in hippocampal CA1 pyramidal neurons. J Neurosci 17:6512-21 [PubMed]
Csicsvari J, Hirase H, Czurkó A, Mamiya A, Buzsáki G (1999) Oscillatory coupling of hippocampal pyramidal cells and interneurons in the behaving Rat. J Neurosci 19:274-87 [PubMed]
Dyhrfjeld-Johnsen J, Maier J, Schubert D, Staiger J, Luhmann HJ, Stephan KE, Kötter R (2005) CoCoDat: a database system for organizing and selecting quantitative data on single neurons and neuronal microcircuitry. J Neurosci Methods 141:291-308 [Journal] [PubMed]
   Pyramidal Neuron Deep: Constrained by experiment (Dyhrfjeld-Johnsen et al. 2005) [Model]
Fee MS, Leonardo A (2001) Miniature motorized microdrive and commutator system for chronic neural recording in small animals. J Neurosci Methods 112:83-94 [PubMed]
Ghosh-Dastidar S, Adeli H (2009) Spiking neural networks. Int J Neural Syst 19:295-308 [Journal] [PubMed]
Gold C, Henze DA, Koch C, Buzsáki G (2006) On the origin of the extracellular action potential waveform: A modeling study. J Neurophysiol 95:3113-28 [Journal] [PubMed]
   Extracellular Action Potential Simulations (Gold et al 2007) [Model]
Grand L, Wittner L, Herwik S, Göthelid E, Ruther P, Oscarsson S, Neves H, Dombovári B, Csercsa R, Karmos G, Ulbert I (2010) Short and long term biocompatibility of NeuroProbes silicon probes. J Neurosci Methods 189:216-29 [Journal] [PubMed]
Hahnloser RH, Kozhevnikov AA, Fee MS (2002) An ultra-sparse code underlies the generation of neural sequences in a songbird. Nature 419:65-70 [Journal] [PubMed]
Harris KD, Henze DA, Csicsvari J, Hirase H, Buzsáki G (2000) Accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements. J Neurophysiol 84:401-14 [Journal] [PubMed]
Harris KD, Hirase H, Leinekugel X, Henze DA, Buzsáki G (2001) Temporal interaction between single spikes and complex spike bursts in hippocampal pyramidal cells. Neuron 32:141-9 [PubMed]
Harsch A, Robinson HP (2000) Postsynaptic variability of firing in rat cortical neurons: the roles of input synchronization and synaptic NMDA receptor conductance. J Neurosci 20:6181-92 [PubMed]
Herwik S,Kisban S,Aarts AAA,Seidl K,Girardeau G,Benchenane K,Zugaro MB,Wiener SI,Paul O,Neves HP,Ruther P (2009) Fabrication technology for silicon-based microprobe arrays used in acute and sub-chronic neural recording J. Micromech. Microeng. 19(7):1-11
Holt GR, Koch C (1999) Electrical interactions via the extracellular potential near cell bodies. J Comput Neurosci 6:169-84 [Journal] [PubMed]
   Extracellular Action Potential Simulations (Gold et al 2007) [Model]
Hunter JD, Milton JG, Thomas PJ, Cowan JD (1998) Resonance effect for neural spike time reliability. J Neurophysiol 80:1427-38 [Journal] [PubMed]
Iglesias J,Villa AEP (2008) Emergence of preferred firing sequences in large spiking neural networks during simulated neuronal development Int. J. Neural Syst. 18(4):267-277
Jackson N, Sridharan A, Anand S, Baker M, Okandan M, Muthuswamy J (2010) Long-Term Neural Recordings Using MEMS Based Movable Microelectrodes in the Brain. Front Neuroeng 3:10 [Journal] [PubMed]
Kipke DR, Shain W, Buzsáki G, Fetz E, Henderson JM, Hetke JF, Schalk G (2008) Advanced neurotechnologies for chronic neural interfaces: new horizons and clinical opportunities. J Neurosci 28:11830-8 [Journal] [PubMed]
Kreuz T, Haas JS, Morelli A, Abarbanel HD, Politi A (2007) Measuring spike train synchrony. J Neurosci Methods 165:151-61 [Journal] [PubMed]
Lewicki MS (1998) A review of methods for spike sorting: the detection and classification of neural action potentials. Network 9:R53-78 [PubMed]
Luque NR, Garrido JA, Carrillo RR, Tolu S, Ros E (2011) Adaptive cerebellar spiking model embedded in the control loop: context switching and robustness against noise. Int J Neural Syst 21:385-401 [Journal] [PubMed]
Maex R, De Schutter E (2003) Resonant synchronization in heterogeneous networks of inhibitory neurons. J Neurosci 23:10503-14 [Journal] [PubMed]
   Fast oscillations in inhibitory networks (Maex, De Schutter 2003) [Model]
Maex R, De Schutter E (2007) Mechanism of spontaneous and self-sustained oscillations in networks connected through axo-axonal gap junctions. Eur J Neurosci 25:3347-58 [Journal] [PubMed]
Nenadic Z, Burdick JW (2005) Spike detection using the continuous wavelet transform. IEEE Trans Biomed Eng 52:74-87 [Journal] [PubMed]
Nenadic Z, Burdick JW (2006) A control algorithm for autonomous optimization of extracellular recordings. IEEE Trans Biomed Eng 53:941-55 [Journal] [PubMed]
Neves HP, Ruther P (2007) The NeuroProbes Project. Conf Proc IEEE Eng Med Biol Soc 2007:6443-5 [Journal] [PubMed]
Neves HP,Orban GA,Koudelka-Hep M,Ruther P (2007) Development of multifunctional probe arrays for cerebral applications Proc. 3rd Int. IEEE EMBS Conf. on Neural Engineering :104-109
Peng H, Long F, Ding C (2005) Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy. IEEE Trans Pattern Anal Mach Intell 27:1226-38 [Journal] [PubMed]
Pine J (2006) A history of MEA development Advances in Network Electrophysiology: Using Multi-Electrode Arrays, Taketani M:Baudry M, ed. pp.3
Pouzat C, Delescluse M, Viot P, Diebolt J (2004) Improved spike-sorting by modeling firing statistics and burst-dependent spike amplitude attenuation: a Markov chain Monte Carlo approach. J Neurophysiol 91:2910-28 [Journal] [PubMed]
Quian Quiroga R (2009) What is the real shape of extracellular spikes? J Neurosci Methods 177:194-8 [Journal] [PubMed]
Quirk MC, Blum KI, Wilson MA (2001) Experience-dependent changes in extracellular spike amplitude may reflect regulation of dendritic action potential back-propagation in rat hippocampal pyramidal cells. J Neurosci 21:240-8 [PubMed]
Rossello JL, Canals V, Morro A, Verd J (2009) Chaos-based mixed signal implementation of spiking neurons. Int J Neural Syst 19:465-71 [Journal] [PubMed]
Ruther P,Herwik S,Kisban S,Seidl K,Paul O (2010) Recent progress in neural probes using siliconMEMS technology IEEJ Trans. Electr. Electron. Eng. 5(5):505-515
Ruther P;Aarts A,Frey O,Herwik S,Kisban, K. Seidl K,Spieth S,Schumacher A,Koudelka-Hep M,Paul O,Stieglitz T,Zengerle R,Neves HP (2008) The NeuroProbes project - multifunctional probe arrays for neural recording and stimulation Biomed. Tech. 53(1):238-240
Sahani M,Pezaris JS,Andersen RA (1998) On the separation of signals from neighboring cells in tetrode recordings Advances in Neural Information Processing Systems, Jordan MI:Kearns MJ:Solla SA, ed. pp.222
Sato T, Suzuki T, Mabuchi K (2007) A new multi-electrode array design for chronic neural recording, with independent and automatic hydraulic positioning. J Neurosci Methods 160:45-51 [Journal] [PubMed]
Schreiber S, Fellous JM, Whitmer D, Tiesinga P, Sejnowski TJ (2003) A new correlation-based measure of spike timing reliability. Neurocomputing 52-54:925-931 [Journal] [PubMed]
Schubert D, Staiger JF, Cho N, Kötter R, Zilles K, Luhmann HJ (2001) Layer-specific intracolumnar and transcolumnar functional connectivity of layer V pyramidal cells in rat barrel cortex. J Neurosci 21:3580-92 [PubMed]
Seidl K, Torfs T, De Mazière PA, Van Dijck G, Csercsa R, Dombovari B, Nurcahyo Y, Ramirez H, Van Hulle MM, Orban GA, Paul O, Ulbert I, Neves H, Ruther P (2010) Control and data acquisition software for high-density CMOS-based microprobe arrays implementing electronic depth control. Biomed Tech (Berl) 55:183-91 [Journal] [PubMed]
Seidl K,Herwik H,Torfs T,Neves HP,Paul O,Ruther P (2011) CMOS-based high-density silicon microprobe array for electronic depth control in intracortical neural recording J. Microelectromech. Syst.
Seidl K,Herwik S,Nurcahyo Y,Torfs T,Keller M,Schuttler M,Neves HP,Stieglitz T,Paul O,Ruther P (2009) CMOS-based high-density silicon microprobe array for electronic depth control in neural recording Proc. 22nd IEEE Int. Conf. on Micro Electro Mechanical Systems (MEMS) :232-235
Shoham S, Fellows MR, Normann RA (2003) Robust, automatic spike sorting using mixtures of multivariate t-distributions. J Neurosci Methods 127:111-22 [PubMed]
Snider RK, Bonds AB (1998) Classification of non-stationary neural signals. J Neurosci Methods 84:155-66 [PubMed]
Solinas SM, Maex R, De Schutter E (2006) Dendritic amplification of inhibitory postsynaptic potentials in a model Purkinje cell. Eur J Neurosci 23:1207-18 [Journal] [PubMed]
Strain TJ, McDaid LJ, McGinnity TM, Maguire LP, Sayers HM (2010) An STDP training algorithm for a spiking neural network with dynamic threshold neurons. Int J Neural Syst 20:463-80 [Journal] [PubMed]
Stuart G, Spruston N, Sakmann B, Häusser M (1997) Action potential initiation and backpropagation in neurons of the mammalian CNS. Trends Neurosci 20:125-31 [PubMed]
Traub RD, Buhl EH, Gloveli T, Whittington MA (2003) Fast rhythmic bursting can be induced in layer 2/3 cortical neurons by enhancing persistent Na+ conductance or by blocking BK channels. J Neurophysiol 89:909-21 [Journal] [PubMed]
   Mechanisms of fast rhythmic bursting in a layer 2/3 cortical neuron (Traub et al 2003) [Model]
van Rossum MC (2001) A novel spike distance. Neural Comput 13:751-63 [PubMed]
Vidybida A (2011) Testing of information condensation in a model reverberating spiking neural network. Int J Neural Syst 21:187-98 [Journal] [PubMed]
Viswanathan A, Freeman RD (2007) Neurometabolic coupling in cerebral cortex reflects synaptic more than spiking activity. Nat Neurosci 10:1308-12 [Journal] [PubMed]
Wood F, Black MJ, Vargas-Irwin C, Fellows M, Donoghue JP (2004) On the variability of manual spike sorting. IEEE Trans Biomed Eng 51:912-8 [Journal] [PubMed]
Zivkovic Z, van der Heijden F (2004) Recursive unsupervised learning of finite mixture models. IEEE Trans Pattern Anal Mach Intell 26:651-6 [Journal] [PubMed]
(62 refs)