Citations for Optimal synaptic assignment for locomotory behavior in C. elegans (Rakowski & Karbowski 2017)

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Rakowski F, Karbowski J (2017) Optimal synaptic signaling connectome for locomotory behavior in Caenorhabditis elegans: Design minimizing energy cost. PLoS Comput Biol 13:e1005834 [PubMed]

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References and models that cite this paper

Attwell D, Laughlin SB (2001) An energy budget for signaling in the grey matter of the brain. J Cereb Blood Flow Metab 21:1133-45 [Journal] [PubMed]
Bargmann CI (1998) Neurobiology of the Caenorhabditis elegans genome. Science 282:2028-33 [PubMed]
Bargmann CI, Marder E (2013) From the connectome to brain function. Nat Methods 10:483-90 [PubMed]
Brockie PJ, Maricq AV (2006) Ionotropic glutamate receptors: genetics, behavior and electrophysiology. WormBook :1-16 [Journal] [PubMed]
Bryden J, Cohen N (2008) Neural control of Caenorhabditis elegans forward locomotion: the role of sensory feedback. Biol Cybern 98:339-51 [Journal] [PubMed]
Chalfie M, Sulston JE, White JG, Southgate E, Thomson JN, Brenner S (1985) The neural circuit for touch sensitivity in Caenorhabditis elegans. J Neurosci 5:956-64 [PubMed]
Chen BL, Hall DH, Chklovskii DB (2006) Wiring optimization can relate neuronal structure and function. Proc Natl Acad Sci U S A 103:4723-8 [Journal] [PubMed]
Compte A, Sanchez-Vives MV, McCormick DA, Wang XJ (2003) Cellular and network mechanisms of slow oscillatory activity (<1 Hz) and wave propagations in a cortical network model. J Neurophysiol 89:2707-25 [Journal] [PubMed]
Dayan P, Abbott LF (2001) Theoretical Neuroscience. Computational and Mathematical Modeling of Neural Systems
de Bono M, Maricq AV (2005) Neuronal substrates of complex behaviors in C. elegans. Annu Rev Neurosci 28:451-501 [Journal] [PubMed]
Ermentrout GB, Terman DH (2010) Mathematical Foundations of Neuroscience Interdisciplinary Applied Mathematics, Antman SS:Marsden JE:Sirovich L:Wiggins, ed. pp.1 [Journal]
   Mathematical Foundations of Neuroscience (Ermentrout and Terman 2010) [Model]
Faumont S, Lindsay TH, Lockery SR (2012) Neuronal microcircuits for decision making in C. elegans. Curr Opin Neurobiol 22:580-91 [Journal] [PubMed]
Faumont S, Rondeau G, Thiele TR, Lawton KJ, McCormick KE, Sottile M, Griesbeck O, Heckscher ES, Roberts WM, Doe CQ, Lockery SR (2011) An image-free opto-mechanical system for creating virtual environments and imaging neuronal activity in freely moving Caenorhabditis elegans. PLoS One 6:e24666 [Journal] [PubMed]
Felch AC, Granger RH (2008) The hypergeometric connectivity hypothesis: divergent performance of brain circuits with different synaptic connectivity distributions. Brain Res 1202:3-13 [Journal] [PubMed]
Gao S, Xie L, Kawano T, Po MD, Guan S, Zhen M, Pirri JK, Alkema MJ (2015) The NCA sodium leak channel is required for persistent motor circuit activity that sustains locomotion. Nat Commun 6:6323 [Journal] [PubMed]
Gardiner CW (2004) Handbook of Stochastic Methods for Physics, Chemistry and the Natural Sciences Springer Series in Synergetics, 3rd ed.
Goodman MB, Hall DH, Avery L, Lockery SR (1998) Active currents regulate sensitivity and dynamic range in C. elegans neurons. Neuron 20:763-72 [PubMed]
Gordus A, Pokala N, Levy S, Flavell SW, Bargmann CI (2015) Feedback from network states generates variability in a probabilistic olfactory circuit. Cell 161:215-27 [Journal] [PubMed]
Gorski L,Rakowski F,Bala P (2016) Parallel differential evolution in the PGAS programming model implemented with PCJ Java library Lecture Notes in Computer Science
Gray JM, Hill JJ, Bargmann CI (2005) A circuit for navigation in Caenorhabditis elegans. Proc Natl Acad Sci U S A 102:3184-91 [Journal] [PubMed]
Hagmann P, Cammoun L, Gigandet X, Meuli R, Honey CJ, Wedeen VJ, Sporns O (2008) Mapping the structural core of human cerebral cortex. PLoS Biol 6:e159 [Journal] [PubMed]
Haspel G, O'Donovan MJ, Hart AC (2010) Motoneurons dedicated to either forward or backward locomotion in the nematode Caenorhabditis elegans. J Neurosci 30:11151-6 [Journal] [PubMed]
Hendricks M, Ha H, Maffey N, Zhang Y (2012) Compartmentalized calcium dynamics in a C. elegans interneuron encode head movement. Nature 487:99-103 [Journal] [PubMed]
Hille B (2001) Ion channels of excitable membranes (3rd Ed) :445-452
Hobert O (2013) The neuronal genome of Caenorhabditis elegans. WormBook :1-106 [Journal] [PubMed]
Huh S (2016) Promotion of Neurointervention to International Journal Based on Journal Metrics. Neurointervention 11:5-9 [Journal] [PubMed]
Izquierdo EJ, Beer RD (2013) Connecting a connectome to behavior: an ensemble of neuroanatomical models of C. elegans klinotaxis. PLoS Comput Biol 9:e1002890 [Journal] [PubMed]
Johnson MD, Hyngstrom AS, Manuel M, Heckman CJ (2012) Push-pull control of motor output. J Neurosci 32:4592-9 [Journal] [PubMed]
Karbowski J (2007) Global and regional brain metabolic scaling and its functional consequences. BMC Biol 5:18 [Journal] [PubMed]
Karbowski J (2015) Cortical Composition Hierarchy Driven by Spine Proportion Economical Maximization or Wire Volume Minimization. PLoS Comput Biol 11:e1004532 [Journal] [PubMed]
Karbowski J, Cronin CJ, Seah A, Mendel JE, Cleary D, Sternberg PW (2006) Conservation rules, their breakdown, and optimality in Caenorhabditis sinusoidal locomotion. J Theor Biol 242:652-69 [Journal] [PubMed]
Karbowski J, Schindelman G, Cronin CJ, Seah A, Sternberg PW (2008) Systems level circuit model of C. elegans undulatory locomotion: mathematical modeling and molecular genetics. J Comput Neurosci 24:253-76 [Journal] [PubMed]
Kawano T, Po MD, Gao S, Leung G, Ryu WS, Zhen M (2011) An imbalancing act: gap junctions reduce the backward motor circuit activity to bias C. elegans for forward locomotion. Neuron 72:572-86 [Journal] [PubMed]
Khambhati AN, Davis KA, Lucas TH, Litt B, Bassett DS (2016) Virtual Cortical Resection Reveals Push-Pull Network Control Preceding Seizure Evolution. Neuron 91:1170-1182 [Journal] [PubMed]
Koch C (1998) Biophysics of Computation: Information Processing in Single Neurons
Kopell NJ, Gritton HJ, Whittington MA, Kramer MA (2014) Beyond the connectome: the dynome. Neuron 83:1319-28 [Journal] [PubMed]
Kromer P,Platos J,Snasel V (2013) Parallel differential evolution in unified parallel C IEEE Congress on Evolutionary Computation (CEC) :642-649
Larsch J, Ventimiglia D, Bargmann CI, Albrecht DR (2013) High-throughput imaging of neuronal activity in Caenorhabditis elegans. Proc Natl Acad Sci U S A 110:E4266-73 [Journal] [PubMed]
Leifer AM, Fang-Yen C, Gershow M, Alkema MJ, Samuel AD (2011) Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans. Nat Methods 8:147-52 [Journal] [PubMed]
Liu P, Chen B, Mailler R, Wang ZW (2017) Antidromic-rectifying gap junctions amplify chemical transmission at functionally mixed electrical-chemical synapses. Nat Commun 8:14818 [Journal] [PubMed]
Liu P, Chen B, Wang ZW (2014) SLO-2 potassium channel is an important regulator of neurotransmitter release in Caenorhabditis elegans. Nat Commun 5:5155 [Journal] [PubMed]
Marder E, Bucher D (2007) Understanding circuit dynamics using the stomatogastric nervous system of lobsters and crabs. Annu Rev Physiol 69:291-316 [Journal] [PubMed]
Mellem JE, Brockie PJ, Zheng Y, Madsen DM, Maricq AV (2002) Decoding of polymodal sensory stimuli by postsynaptic glutamate receptors in C. elegans. Neuron 36:933-44 [PubMed]
Nguyen JP, Shipley FB, Linder AN, Plummer GS, Liu M, Setru SU, Shaevitz JW, Leifer AM (2016) Whole-brain calcium imaging with cellular resolution in freely behaving Caenorhabditis elegans. Proc Natl Acad Sci U S A 113:E1074-81 [Journal] [PubMed]
Piggott BJ, Liu J, Feng Z, Wescott SA, Xu XZ (2011) The neural circuits and synaptic mechanisms underlying motor initiation in C. elegans. Cell 147:922-33 [Journal] [PubMed]
Prevedel R, Yoon YG, Hoffmann M, Pak N, Wetzstein G, Kato S, Schrödel T, Raskar R, Zimmer M, Boyden ES, Vaziri A (2014) Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy. Nat Methods 11:727-730 [Journal] [PubMed]
Putrenko I, Zakikhani M, Dent JA (2005) A family of acetylcholine-gated chloride channel subunits in Caenorhabditis elegans. J Biol Chem 280:6392-8 [Journal] [PubMed]
Qi YB, Garren EJ, Shu X, Tsien RY, Jin Y (2012) Photo-inducible cell ablation in Caenorhabditis elegans using the genetically encoded singlet oxygen generating protein miniSOG. Proc Natl Acad Sci U S A 109:7499-504 [Journal] [PubMed]
Rakowski F, Srinivasan J, Sternberg PW, Karbowski J (2013) Synaptic polarity of the interneuron circuit controlling C. elegans locomotion. Front Comput Neurosci 7:128 [Journal] [PubMed]
Roberts WM, Augustine SB, Lawton KJ, Lindsay TH, Thiele TR, Izquierdo EJ, Faumont S, Lindsay RA, Britton MC, Pokala N, Bargmann CI, Lockery SR (2016) A stochastic neuronal model predicts random search behaviors at multiple spatial scales inC. elegans. Elife [Journal] [PubMed]
Schröter M, Paulsen O, Bullmore ET (2017) Micro-connectomics: probing the organization of neuronal networks at the cellular scale. Nat Rev Neurosci 18:131-146 [Journal] [PubMed]
Sporns O (2010) Networks of the brain
Stephens GJ, Bueno de Mesquita M, Ryu WS, Bialek W (2011) Emergence of long timescales and stereotyped behaviors in Caenorhabditis elegans. Proc Natl Acad Sci U S A 108:7286-9 [Journal] [PubMed]
Stephens GJ, Johnson-Kerner B, Bialek W, Ryu WS (2008) Dimensionality and dynamics in the behavior of C. elegans. PLoS Comput Biol 4:e1000028 [Journal] [PubMed]
Towlson EK, Vértes PE, Ahnert SE, Schafer WR, Bullmore ET (2013) The rich club of the C. elegans neuronal connectome. J Neurosci 33:6380-7 [Journal] [PubMed]
Varshney LR, Chen BL, Paniagua E, Hall DH, Chklovskii DB (2011) Structural properties of the Caenorhabditis elegans neuronal network. PLoS Comput Biol 7:e1001066 [Journal] [PubMed]
Wang XJ (1998) Calcium coding and adaptive temporal computation in cortical pyramidal neurons. J Neurophysiol 79:1549-66 [Journal] [PubMed]
Wang XJ (2008) Decision making in recurrent neuronal circuits. Neuron 60:215-34 [Journal] [PubMed]
Webpage W (2017) [Journal]
White JG, Southgate E, Thomson JN, Brenner S (1986) The structure of the nervous system of the nematode Caenorhabditis elegans. Philos Trans R Soc Lond B Biol Sci 314:1-340 [Journal] [PubMed]
Wicks SR, Roehrig CJ, Rankin CH (1996) A dynamic network simulation of the nematode tap withdrawal circuit: predictions concerning synaptic function using behavioral criteria. J Neurosci 16:4017-31 [PubMed]
Xie L, Gao S, Alcaire SM, Aoyagi K, Wang Y, Griffin JK, Stagljar I, Nagamatsu S, Zhen M (2013) NLF-1 delivers a sodium leak channel to regulate neuronal excitability and modulate rhythmic locomotion. Neuron 77:1069-82 [Journal] [PubMed]
Zaslaver A, Liani I, Shtangel O, Ginzburg S, Yee L, Sternberg PW (2015) Hierarchical sparse coding in the sensory system of Caenorhabditis elegans. Proc Natl Acad Sci U S A 112:1185-9 [Journal] [PubMed]
Zhen M, Samuel AD (2015) C. elegans locomotion: small circuits, complex functions. Curr Opin Neurobiol 33:117-26 [Journal] [PubMed]
Zheng Y, Brockie PJ, Mellem JE, Madsen DM, Maricq AV (1999) Neuronal control of locomotion in C. elegans is modified by a dominant mutation in the GLR-1 ionotropic glutamate receptor. Neuron 24:347-61 [PubMed]
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