Citations for DynaSim: a MATLAB toolbox for neural modeling and simulation (Sherfey et al 2018)

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Sherfey JS, Soplata AE, Ardid S, Roberts EA, Stanley DA, Pittman-Polletta BR, Kopell NJ (2018) DynaSim: A MATLAB Toolbox for Neural Modeling and Simulation. Front Neuroinform 12:10 [PubMed]

References and models cited by this paper

References and models that cite this paper

Bokil H, Andrews P, Kulkarni JE, Mehta S, Mitra PP (2010) Chronux: a platform for analyzing neural signals. J Neurosci Methods 192:146-51 [Journal] [PubMed]
Börgers C, Kopell N (2005) Effects of noisy drive on rhythms in networks of excitatory and inhibitory neurons. Neural Comput 17:557-608 [Journal] [PubMed]
Ching S, Cimenser A, Purdon PL, Brown EN, Kopell NJ (2010) Thalamocortical model for a propofol-induced alpha-rhythm associated with loss of consciousness. Proc Natl Acad Sci U S A 107:22665-70 [Journal] [PubMed]
Delorme A, Makeig S (2004) EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis. J Neurosci Methods 134:9-21 [Journal] [PubMed]
Durstewitz D, Seamans JK, Sejnowski TJ (2000) Neurocomputational models of working memory. Nat Neurosci 3 Suppl:1184-91 [Journal] [PubMed]
Eaton JW,Bateman D,Hauberg S,Wehbring R (2016) GNU Octave Version 4.2.0 Manual: A High-Level Interactive Language for Numerical Computations. Available online at: http://www.gnu.org/software/octave/doc/interpreter/
Ermentrout GB (2002) Simulating, Analyzing, and Animating Dynamical System: A Guide to XPPAUT for Researchers and Students Society for Industrial and Applied Mathematics (SIAM)
Fitzhugh R (1955) Mathematical models of threshold phenomena in the nerve membrane Bullmath Biophys 17:257-278
Gewaltig M-O, Diesmann M (2007) NEST (Neural Simulation Tool) Scholarpedia 2:1430
Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray S, Bhalla US, Barnes SR, Dimitrova YD, Silver RA (2010) NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS Comput Biol 6:e1000815 [Journal] [PubMed]
Goodman D, Brette R (2008) Brian: a simulator for spiking neural networks in python. Front Neuroinform 2:5 [Journal] [PubMed]
Goodman DF, Brette R (2009) The brian simulator. Front Neurosci 3:192-7 [Journal] [PubMed]
Hines ML, Carnevale NT (1997) The NEURON simulation environment. Neural Comput 9:1179-209 [PubMed]
Izhikevich EM (2003) Simple model of spiking neurons. IEEE Trans Neural Netw 14:1569-72 [Journal] [PubMed]
   Artificial neuron model (Izhikevich 2003, 2004, 2007) [Model]
Koch C, Segev I (1998) Methods In Neuronal Modeling
Kopell N, Ermentrout GB, Whittington MA, Traub RD (2000) Gamma rhythms and beta rhythms have different synchronization properties. Proc Natl Acad Sci U S A 97:1867-72 [PubMed]
Kramer MA, Roopun AK, Carracedo LM, Traub RD, Whittington MA, Kopell NJ (2008) Rhythm generation through period concatenation in rat somatosensory cortex. PLoS Comput Biol 4:e1000169 [Journal] [PubMed]
Lorenz EN (1963) Deterministic nonperiodic flow J Atmospher Sci 20:131-141 [Journal]
MATLAB (2017) Version 9.2.0 (R2017a). Natick, MA: The MathWorks Inc.
McDougal RA, Morse TM, Carnevale T, Marenco L, Wang R, Migliore M, Miller PL, Shepherd GM, Hines ML (2017) Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience. J Comput Neurosci 42:1-10 [Journal] [PubMed]
Meng L, Kramer MA, Middleton SJ, Whittington MA, Eden UT (2014) A unified approach to linking experimental, statistical and computational analysis of spike train data. PLoS One 9:e85269 [Journal] [PubMed]
Morris C, Lecar H (1981) Voltage oscillations in the barnacle giant muscle fiber. Biophys J 35:193-213 [Journal] [PubMed]
   Morris-Lecar model of the barnacle giant muscle fiber (Morris, Lecar 1981) [Model]
Oostenveld R, Fries P, Maris E, Schoffelen JM (2011) FieldTrip: Open source software for advanced analysis of MEG, EEG, and invasive electrophysiological data. Comput Intell Neurosci 2011:156869 [Journal] [PubMed]
Rudolph M, Destexhe A (2007) How much can we trust neural simulation strategies Neurocomputing 70:1966-1969
Stimberg M, Goodman DF, Benichoux V, Brette R (2014) Equation-oriented specification of neural models for simulations. Front Neuroinform 8:6 [Journal] [PubMed]
Traub RD, Buhl EH, Gloveli T, Whittington MA (2003) Fast rhythmic bursting can be induced in layer 2/3 cortical neurons by enhancing persistent Na+ conductance or by blocking BK channels. J Neurophysiol 89:909-21 [Journal] [PubMed]
   Mechanisms of fast rhythmic bursting in a layer 2/3 cortical neuron (Traub et al 2003) [Model]
Chartove JA, McCarthy MM, Pittman-Polletta BR, Kopell NJ (2020) A biophysical model of striatal microcircuits suggests gamma and beta oscillations interleaved at delta/theta frequencies mediate periodicity in motor control PLOS Computational Biology 16:1-30 [Journal]
   Striatal FSI and SPN oscillation model (Chartove et al. 2020) [Model]
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