Citations for Biophysically realistic neuron models for simulation of cortical stimulation (Aberra et al. 2018)

Legends: Link to a Model Reference cited by multiple papers

Aberra AS, Peterchev AV, Grill WM (2018) Biophysically realistic neuron models for simulation of cortical stimulation. J Neural Eng 15:066023 [PubMed]

References and models cited by this paper

References and models that cite this paper

Anwar H,Riachi I,Hill S,Schurmann F,Markram H (2009) An approach to capturing neuron morphological diversity Computational Modeling Methods for Neuroscientists, De_Schutter E, ed.
Arlotti M, Rahman A, Minhas P, Bikson M (2012) Axon terminal polarization induced by weak uniform DC electric fields: a modeling study. Conf Proc IEEE Eng Med Biol Soc 2012:4575-8 [Journal] [PubMed]
Aroniadou VA, Keller A (1993) The patterns and synaptic properties of horizontal intracortical connections in the rat motor cortex. J Neurophysiol 70:1553-69 [Journal] [PubMed]
Asanuma H, Arnold A, Zarzecki P (1976) Further study on the excitation of pyramidal tract cells by intracortical microstimulation. Exp Brain Res 26:443-61 [PubMed]
Baranauskas G, David Y, Fleidervish IA (2013) Spatial mismatch between the Na+ flux and spike initiation in axon initial segment. Proc Natl Acad Sci U S A 110:4051-6 [Journal] [PubMed]
Basser PJ (1993) Cable equation for a myelinated axon derived from its microstructure. Med Biol Eng Comput 31 Suppl:S87-92 [PubMed]
Battefeld A, Tran BT, Gavrilis J, Cooper EC, Kole MH (2014) Heteromeric Kv7.2/7.3 channels differentially regulate action potential initiation and conduction in neocortical myelinated axons. J Neurosci 34:3719-32 [Journal] [PubMed]
Berret E, Kim SE, Lee SY, Kushmerick C, Kim JH (2016) Functional and structural properties of ion channels at the nerve terminal depends on compact myelin. J Physiol 594:5593-609 [Journal] [PubMed]
Bikson M, Dmochowski J, Rahman A (2013) The "quasi-uniform" assumption in animal and computational models of non-invasive electrical stimulation. Brain Stimul 6:704-5 [Journal] [PubMed]
Bikson M, Inoue M, Akiyama H, Deans JK, Fox JE, Miyakawa H, Jefferys JG (2004) Effects of uniform extracellular DC electric fields on excitability in rat hippocampal slices in vitro. J Physiol 557:175-90 [Journal] [PubMed]
Bossetti CA, Birdno MJ, Grill WM (2008) Analysis of the quasi-static approximation for calculating potentials generated by neural stimulation. J Neural Eng 5:44-53 [Journal] [PubMed]
Caldwell JH, Schaller KL, Lasher RS, Peles E, Levinson SR (2000) Sodium channel Na(v)1.6 is localized at nodes of ranvier, dendrites, and synapses. Proc Natl Acad Sci U S A 97:5616-20 [Journal] [PubMed]
Chakraborty D, Truong DQ, Bikson M, Kaphzan H (2018) Neuromodulation of Axon Terminals. Cereb Cortex 28:2786-2794 [Journal] [PubMed]
Chan CY, Hounsgaard J, Nicholson C (1988) Effects of electric fields on transmembrane potential and excitability of turtle cerebellar Purkinje cells in vitro. J Physiol 402:751-71 [PubMed]
Colbert CM, Pan E (2002) Ion channel properties underlying axonal action potential initiation in pyramidal neurons. Nat Neurosci 5:533-8 [Journal] [PubMed]
DeFelipe J, Conley M, Jones EG (1986) Long-range focal collateralization of axons arising from corticocortical cells in monkey sensory-motor cortex. J Neurosci 6:3749-66 [PubMed]
Deitcher Y, Eyal G, Kanari L, Verhoog MB, Atenekeng Kahou GA, Mansvelder HD, de Kock CPJ, Segev I (2017) Comprehensive Morpho-Electrotonic Analysis Shows 2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex. Cereb Cortex 27:5398-5414 [Journal] [PubMed]
   2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex (Deitcher et al 2017) [Model]
Di Lazzaro V, Rothwell J, Capogna M (2018) Noninvasive Stimulation of the Human Brain: Activation of Multiple Cortical Circuits. Neuroscientist 24:246-260 [Journal] [PubMed]
Di Lazzaro V, Ziemann U, Lemon RN (2008) State of the art: Physiology of transcranial motor cortex stimulation. Brain Stimul 1:345-62 [Journal] [PubMed]
Dostrovsky JO, Levy R, Wu JP, Hutchison WD, Tasker RR, Lozano AM (2000) Microstimulation-induced inhibition of neuronal firing in human globus pallidus. J Neurophysiol 84:570-4 [Journal] [PubMed]
Druckmann S, Banitt Y, Gidon A, Schürmann F, Markram H, Segev I (2007) A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data. Front Neurosci 1:7-18 [Journal] [PubMed]
Engel D, Jonas P (2005) Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons. Neuron 45:405-17 [Journal] [PubMed]
Eyal G, Mansvelder HD, de Kock CP, Segev I (2014) Dendrites impact the encoding capabilities of the axon. J Neurosci 34:8063-71 [Journal] [PubMed]
Fernandez FR, Rahsepar B, White JA (2018) Differences in the Electrophysiological Properties of Mouse Somatosensory Layer 2/3 Neurons In Vivo and Slice Stem from Intrinsic Sources Rather than a Network-Generated High Conductance State. eNeuro [Journal] [PubMed]
Foust AJ, Yu Y, Popovic M, Zecevic D, McCormick DA (2011) Somatic membrane potential and Kv1 channels control spike repolarization in cortical axon collaterals and presynaptic boutons. J Neurosci 31:15490-8 [Journal] [PubMed]
   Spike repolarization in axon collaterals (Foust et al. 2011) [Model]
Geeter ND, Dupré L, Crevecoeur G (2016) Modeling transcranial magnetic stimulation from the induced electric fields to the membrane potentials along tractography-based white matter fiber tracts. J Neural Eng 13:026028 [Journal] [PubMed]
Goodwin BD, Butson CR (2015) Subject-Specific Multiscale Modeling to Investigate Effects of Transcranial Magnetic Stimulation. Neuromodulation 18:694-704 [Journal] [PubMed]
GRAY EG (1959) Axo-somatic and axo-dendritic synapses of the cerebral cortex: an electron microscope study. J Anat 93:420-33 [PubMed]
Grill WM, Cantrell MB, Robertson MS (2008) Antidromic propagation of action potentials in branched axons: implications for the mechanisms of action of deep brain stimulation. J Comput Neurosci 24:81-93 [Journal] [PubMed]
Gustafsson B, Jankowska E (1976) Direct and indirect activation of nerve cells by electrical pulses applied extracellularly. J Physiol 258:33-61 [PubMed]
Hayut I, Fanselow EE, Connors BW, Golomb D (2011) LTS and FS inhibitory interneurons, short-term synaptic plasticity, and cortical circuit dynamics. PLoS Comput Biol 7:e1002248 [Journal] [PubMed]
   Rate model of a cortical RS-FS-LTS network (Hayut et al. 2011) [Model]
Hentall ID (1985) The membrane potential along an ideal axon in a radial electric field. Brain Res 336:387-9 [PubMed]
HESS A, YOUNG JZ (1949) Correlation of internodal length and fibre diameter in the central nervous system. Nature 164:490 [PubMed]
Hildebrand C, Remahl S, Persson H, Bjartmar C (1993) Myelinated nerve fibres in the CNS. Prog Neurobiol 40:319-84 [PubMed]
Hines ML, Carnevale NT (1997) The NEURON simulation environment. Neural Comput 9:1179-209 [PubMed]
Histed MH, Bonin V, Reid RC (2009) Direct activation of sparse, distributed populations of cortical neurons by electrical microstimulation. Neuron 63:508-22 [Journal] [PubMed]
Huang H, Trussell LO (2008) Control of presynaptic function by a persistent Na(+) current. Neuron 60:975-9 [Journal] [PubMed]
Huang Y, Liu AA, Lafon B, Friedman D, Dayan M, Wang X, Bikson M, Doyle WK, Devinsky O, Parra LC (2017) Measurements and models of electric fields in the in vivo human brain during transcranial electric stimulation. Elife [Journal] [PubMed]
Huntley GW, Jones EG (1991) Relationship of intrinsic connections to forelimb movement representations in monkey motor cortex: a correlative anatomic and physiological study. J Neurophysiol 66:390-413 [Journal] [PubMed]
Hursh JB (1939) Conduction velocity and diameter of nerve fibers. American Journal of Physiology 127:131-139
Hussin AT, Boychuk JA, Brown AR, Pittman QJ, Teskey GC (2015) Intracortical Microstimulation (ICMS) Activates Motor Cortex Layer 5 Pyramidal Neurons Mainly Transsynaptically. Brain Stimul 8:742-50 [Journal] [PubMed]
Ilmoniemi RJ, Mäki H, Saari J, Salvador R, Miranda PC (2016) The Frequency-Dependent Neuronal Length Constant in Transcranial Magnetic Stimulation. Front Cell Neurosci 10:194 [Journal] [PubMed]
Jacobs G, Claiborne B, Harris KM (2010) Reconstruction of neuronal morphology Computational Modeling Methods for Neuroscientists, De_Schutter E, ed. pp.187
Jankowska E, Padel Y, Tanaka R (1975) The mode of activation of pyramidal tract cells by intracortical stimuli. J Physiol 249:617-36 [PubMed]
Kaiserman-Abramof IR, Peters A (1972) Some aspects of the morphology of Betz cells in the cerebral cortex of the cat. Brain Res 43:527-46 [PubMed]
Kamitani Y, Bhalodia VM, Kubota Y, Shimojo S (2001) A model of magnetic stimulation of neocortical neurons Neurocomputing 38:697-703
Kasper EM, Larkman AU, Lübke J, Blakemore C (1994) Pyramidal neurons in layer 5 of the rat visual cortex. II. Development of electrophysiological properties. J Comp Neurol 339:475-94 [Journal] [PubMed]
Kole MH, Ilschner SU, Kampa BM, Williams SR, Ruben PC, Stuart GJ (2008) Action potential generation requires a high sodium channel density in the axon initial segment. Nat Neurosci 11:178-86 [Journal] [PubMed]
   Na+ channel dependence of AP initiation in cortical pyramidal neuron (Kole et al. 2008) [Model]
Kudela P, Anderson WS (2015) Computational Modeling of Subdural Cortical Stimulation: A Quantitative Spatiotemporal Analysis of Action Potential Initiation in a High-Density Multicompartment Model. Neuromodulation 18:552-64 ; discussion 564-5 [Journal] [PubMed]
Lee DC, Grill WM (2005) Polarization of a spherical cell in a nonuniform extracellular electric field. Ann Biomed Eng 33:603-15 [PubMed]
Lohmann H, Rörig B (1994) Long-range horizontal connections between supragranular pyramidal cells in the extrastriate visual cortex of the rat. J Comp Neurol 344:543-58 [Journal] [PubMed]
Lorincz A, Nusser Z (2010) Molecular identity of dendritic voltage-gated sodium channels. Science 328:906-9 [Journal] [PubMed]
Mainen ZF, Joerges J, Huguenard JR, Sejnowski TJ (1995) A model of spike initiation in neocortical pyramidal neurons. Neuron 15:1427-39 [PubMed]
   Spike Initiation in Neocortical Pyramidal Neurons (Mainen et al 1995) [Model]
Mainen ZF, Sejnowski TJ (1996) Influence of dendritic structure on firing pattern in model neocortical neurons. Nature 382:363-6 [Journal] [PubMed]
   Influence of dendritic structure on neocortical neuron firing patterns (Mainen and Sejnowski 1996) [Model]
Major G, Larkum ME, Schiller J (2013) Active properties of neocortical pyramidal neuron dendrites. Annu Rev Neurosci 36:1-24 [Journal] [PubMed]
Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Bé JV, Magalhães BR, Merchán-Pérez A, Meystre J, Morrice BR, Muller J, Muñoz-Céspedes A, Muralidhar S, Muthurasa K, Nachbaur D, Newton TH, Nolte M, Ovcharenko A, Palacios J, Pastor L, Perin R, Ranjan R, Riachi I, Rodríguez JR, Riquelme JL, Rössert C, Sfyrakis K, Shi Y, Shillcock JC, Silberberg G, Silva R, Tauheed F, Telefont M, Toledo-Rodriguez M, Tränkler T, Van Geit W, Díaz JV, Walker R, Wang Y, Zaninetta SM (2015) Reconstruction and Simulation of Neocortical Microcircuitry. Cell 163:456-92 [Journal] [PubMed]
   The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]
McCormick DA, Prince DA (1987) Post-natal development of electrophysiological properties of rat cerebral cortical pyramidal neurones. J Physiol 393:743-62 [PubMed]
McIntyre CC, Grill WM (2001) Finite element analysis of the current-density and electric field generated by metal microelectrodes. Ann Biomed Eng 29:227-35 [PubMed]
McIntyre CC, Grill WM, Sherman DL, Thakor NV (2004) Cellular effects of deep brain stimulation: model-based analysis of activation and inhibition. J Neurophysiol 91:1457-69 [Journal] [PubMed]
Micheva KD, Wolman D, Mensh BD, Pax E, Buchanan J, Smith SJ, Bock DD (2016) A large fraction of neocortical myelin ensheathes axons of local inhibitory neurons. Elife [Journal] [PubMed]
Nagarajan SS, Durand DM, Warman EN (1993) Effects of induced electric fields on finite neuronal structures: a simulation study. IEEE Trans Biomed Eng 40:1175-88 [Journal] [PubMed]
Nieuwenhuys R (2013) The myeloarchitectonic studies on the human cerebral cortex of the Vogt-Vogt school, and their significance for the interpretation of functional neuroimaging data. Brain Struct Funct 218:303-52 [Journal] [PubMed]
Nowak LG, Bullier J (1998) Axons, but not cell bodies, are activated by electrical stimulation in cortical gray matter. I. Evidence from chronaxie measurements. Exp Brain Res 118:477-88 [PubMed]
Nowak LG, Bullier J (1998) Axons, but not cell bodies, are activated by electrical stimulation in cortical gray matter. II. Evidence from selective inactivation of cell bodies and axon initial segments. Exp Brain Res 118:489-500 [PubMed]
Overstreet CK, Klein JD, Helms Tillery SI (2013) Computational modeling of direct neuronal recruitment during intracortical microstimulation in somatosensory cortex. J Neural Eng 10:066016 [Journal] [PubMed]
   Direct recruitment of S1 pyramidal cells and interneurons via ICMS (Overstreet et al., 2013) [Model]
Plonsey R, Heppner DB (1967) Considerations of quasi-stationarity in electrophysiological systems. Bull Math Biophys 29:657-64 [PubMed]
Radman T, Ramos RL, Brumberg JC, Bikson M (2009) Role of cortical cell type and morphology in subthreshold and suprathreshold uniform electric field stimulation in vitro. Brain Stimul 2:215-28, 228.e1-3 [Journal] [PubMed]
Rahman A, Reato D, Arlotti M, Gasca F, Datta A, Parra LC, Bikson M (2013) Cellular effects of acute direct current stimulation: somatic and synaptic terminal effects. J Physiol 591:2563-78 [Journal] [PubMed]
Ranck JB (1975) Which elements are excited in electrical stimulation of mammalian central nervous system: a review. Brain Res 98:417-40 [PubMed]
Rattay F (1999) The basic mechanism for the electrical stimulation of the nervous system. Neuroscience 89:335-46 [PubMed]
Rattay F, Aberham M (1993) Modeling axon membranes for functional electrical stimulation. IEEE Trans Biomed Eng 40:1201-9 [Journal] [PubMed]
Romand S, Wang Y, Toledo-Rodriguez M, Markram H (2011) Morphological development of thick-tufted layer v pyramidal cells in the rat somatosensory cortex. Front Neuroanat 5:5 [Journal] [PubMed]
Roth BJ (1994) Mechanisms for electrical stimulation of excitable tissue. Crit Rev Biomed Eng 22:253-305 [PubMed]
Roth BJ, Basser PJ (1990) A model of the stimulation of a nerve fiber by electromagnetic induction. IEEE Trans Biomed Eng 37:588-97 [Journal] [PubMed]
Rowan MJ, Tranquil E, Christie JM (2014) Distinct Kv channel subtypes contribute to differences in spike signaling properties in the axon initial segment and presynaptic boutons of cerebellar interneurons. J Neurosci 34:6611-23 [Journal] [PubMed]
Ruohonen J (2003) Background physics for magnetic stimulation. Suppl Clin Neurophysiol 56:3-12 [PubMed]
Salvador R, Silva S, Basser PJ, Miranda PC (2011) Determining which mechanisms lead to activation in the motor cortex: a modeling study of transcranial magnetic stimulation using realistic stimulus waveforms and sulcal geometry. Clin Neurophysiol 122:748-58 [Journal] [PubMed]
Schwark HD, Jones EG (1989) The distribution of intrinsic cortical axons in area 3b of cat primary somatosensory cortex. Exp Brain Res 78:501-13 [PubMed]
Seo H, Schaworonkow N, Jun SC, Triesch J (2016) A multi-scale computational model of the effects of TMS on motor cortex. F1000Res 5:1945 [Journal] [PubMed]
Sloper JJ, Powell TP (1979) A study of the axon initial segment and proximal axon of neurons in the primate motor and somatic sensory cortices. Philos Trans R Soc Lond B Biol Sci 285:173-97 [Journal] [PubMed]
Soares D, Goldrick I, Lemon RN, Kraskov A, Greensmith L, Kalmar B (2017) Expression of Kv3.1b potassium channel is widespread in macaque motor cortex pyramidal cells: A histological comparison between rat and macaque. J Comp Neurol 525:2164-2174 [Journal] [PubMed]
Spain WJ, Schwindt PC, Crill WE (1991) Two transient potassium currents in layer V pyramidal neurones from cat sensorimotor cortex. J Physiol 434:591-607 [PubMed]
Stedehouder J, Couey JJ, Brizee D, Hosseini B, Slotman JA, Dirven CMF, Shpak G, Houtsmuller AB, Kushner SA (2017) Fast-spiking Parvalbumin Interneurons are Frequently Myelinated in the Cerebral Cortex of Mice and Humans. Cereb Cortex 27:5001-5013 [Journal] [PubMed]
Stern S, Agudelo-Toro A, Rotem A, Moses E, Neef A (2015) Chronaxie Measurements in Patterned Neuronal Cultures from Rat Hippocampus. PLoS One 10:e0132577 [Journal] [PubMed]
Stoney SD, Thompson WD, Asanuma H (1968) Excitation of pyramidal tract cells by intracortical microstimulation: effective extent of stimulating current. J Neurophysiol 31:659-69 [Journal] [PubMed]
Tahayori B, Meffin H, Sergeev EN, Mareels IM, Burkitt AN, Grayden DB (2014) Modelling extracellular electrical stimulation: part 4. Effect of the cellular composition of neural tissue on its spatio-temporal filtering properties. J Neural Eng 11:065005 [Journal] [PubMed]
Tehovnik EJ, Slocum WM (2013) Two-photon imaging and the activation of cortical neurons. Neuroscience 245:12-25 [Journal] [PubMed]
Tehovnik EJ, Slocum WM, Carvey CE, Schiller PH (2005) Phosphene induction and the generation of saccadic eye movements by striate cortex. J Neurophysiol 93:1-19 [Journal] [PubMed]
Tehovnik EJ, Tolias AS, Sultan F, Slocum WM, Logothetis NK (2006) Direct and indirect activation of cortical neurons by electrical microstimulation. J Neurophysiol 96:512-21 [Journal] [PubMed]
Testa-Silva G, Verhoog MB, Linaro D, de Kock CP, Baayen JC, Meredith RM, De Zeeuw CI, Giugliano M, Mansvelder HD (2014) High bandwidth synaptic communication and frequency tracking in human neocortex. PLoS Biol 12:e1002007 [Journal] [PubMed]
Tomasi S, Caminiti R, Innocenti GM (2012) Areal differences in diameter and length of corticofugal projections. Cereb Cortex 22:1463-72 [Journal] [PubMed]
Tomassy GS, Berger DR, Chen HH, Kasthuri N, Hayworth KJ, Vercelli A, Seung HS, Lichtman JW, Arlotta P (2014) Distinct profiles of myelin distribution along single axons of pyramidal neurons in the neocortex. Science 344:319-24 [Journal] [PubMed]
Tranchina D, Nicholson C (1986) A model for the polarization of neurons by extrinsically applied electric fields. Biophys J 50:1139-56 [Journal] [PubMed]
Vigneswaran G, Kraskov A, Lemon RN (2011) Large identified pyramidal cells in macaque motor and premotor cortex exhibit "thin spikes": implications for cell type classification. J Neurosci 31:14235-42 [Journal] [PubMed]
Vöröslakos M, Takeuchi Y, Brinyiczki K, Zombori T, Oliva A, Fernández-Ruiz A, Kozák G, Kincses ZT, Iványi B, Buzsáki G, Berényi A (2018) Direct effects of transcranial electric stimulation on brain circuits in rats and humans. Nat Commun 9:483 [Journal] [PubMed]
Wagner TA, Zahn M, Grodzinsky AJ, Pascual-Leone A (2004) Three-dimensional head model simulation of transcranial magnetic stimulation. IEEE Trans Biomed Eng 51:1586-98 [Journal] [PubMed]
Wang B, Aberra AS, Grill WM, Peterchev AV (2018) Modified cable equation incorporating transverse polarization of neuronal membranes for accurate coupling of electric fields. J Neural Eng 15:026003 [Journal] [PubMed]
Wang B, Grill WM, Peterchev AV (2018) Coupling Magnetically Induced Electric Fields to Neurons: Longitudinal and Transverse Activation. Biophys J 115:95-107 [Journal] [PubMed]
Waxman SG (1970) Closely spaced nodes of Ranvier in the teleost brain. Nature 227:283-4 [PubMed]
Waxman SG (1971) An ultrastructural study of the pattern of myelination of preterminal fibers in teleost oculomotor nuclei, electromotor nuclei, and spinal cord. Brain Res 27:189-201 [PubMed]
Waxman SG, Kocsis JD, Stys PK (1995) The axon: structure, function and pathophysiology, Waxman SG:Kocsis JD:Stys PK, ed.
Weiss G (1901) Sur la possibilite de rendre comparables entre eux les appareils servant a lexcitation electrique Arch Ital Biol 35:41-46
Wongsarnpigoon A, Grill WM (2012) Computer-based model of epidural motor cortex stimulation: effects of electrode position and geometry on activation of cortical neurons. Clin Neurophysiol 123:160-72 [Journal] [PubMed]
Wu T, Fan J, Lee KS, Li X (2016) Cortical neuron activation induced by electromagnetic stimulation: a quantitative analysis via modelling and simulation. J Comput Neurosci 40:51-64 [Journal] [PubMed]
Yamashita A, Arikuni T (2001) Axon trajectories in local circuits of the primary motor cortex in the macaque monkey (Macaca fuscata). Neurosci Res 39:233-45 [PubMed]
Zhu JJ (2000) Maturation of layer 5 neocortical pyramidal neurons: amplifying salient layer 1 and layer 4 inputs by Ca2+ action potentials in adult rat tuft dendrites. J Physiol 526 Pt 3:571-87 [PubMed]
(113 refs)