Citations for Layer V pyramidal cell functions and schizophrenia genetics (Mäki-Marttunen et al 2019)

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Mäki-Marttunen T, Devor A, Phillips WA, Dale AM, Andreassen OA, Einevoll GT (2019) Computational modeling of genetic contributions to excitability and neural coding in layer V pyramidal cells: applications to schizophrenia pathology Front. Comput. Neurosci. 13:66

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References and models that cite this paper

Anastassiou CA, Perin R, Markram H, Koch C (2011) Ephaptic coupling of cortical neurons. Nat Neurosci 14:217-23 [Journal] [PubMed]
Artola A, Singer W (1993) Long-term depression of excitatory synaptic transmission and its relationship to long-term potentiation. Trends Neurosci 16:480-7 [PubMed]
Ballesteros-Merino C, Watanabe M, Shigemoto R, Fukazawa Y, Adelman JP, Luján R (2014) Differential subcellular localization of SK3-containing channels in the hippocampus. Eur J Neurosci 39:883-92 [Journal] [PubMed]
Bock G, Gebhart M, Scharinger A, Jangsangthong W, Busquet P, Poggiani C, Sartori S, Mangoni ME, Sinnegger-Brauns MJ, Herzig S, Striessnig J, Koschak A (2011) Functional properties of a newly identified C-terminal splice variant of Cav1.3 L-type Ca2+ channels. J Biol Chem 286:42736-48 [Journal] [PubMed]
Brackenbury WJ, Isom LL (2011) Na Channel ß Subunits: Overachievers of the Ion Channel Family. Front Pharmacol 2:53 [Journal] [PubMed]
Carlén M, Meletis K, Siegle JH, Cardin JA, Futai K, Vierling-Claassen D, Rühlmann C, Jones SR, Deisseroth K, Sheng M, Moore CI, Tsai LH (2012) A critical role for NMDA receptors in parvalbumin interneurons for gamma rhythm induction and behavior. Mol Psychiatry 17:537-48 [Journal] [PubMed]
Catterall WA, Perez-Reyes E, Snutch TP, Striessnig J (2005) International Union of Pharmacology. XLVIII. Nomenclature and structure-function relationships of voltage-gated calcium channels. Pharmacol Rev 57:411-25 [Journal] [PubMed]
Cestèle S, Labate A, Rusconi R, Tarantino P, Mumoli L, Franceschetti S, Annesi G, Mantegazza M, Gambardella A (2013) Divergent effects of the T1174S SCN1A mutation associated with seizures and hemiplegic migraine. Epilepsia 54:927-35 [Journal] [PubMed]
Cestèle S, Scalmani P, Rusconi R, Terragni B, Franceschetti S, Mantegazza M (2008) Self-limited hyperexcitability: functional effect of a familial hemiplegic migraine mutation of the Nav1.1 (SCN1A) Na+ channel. J Neurosci 28:7273-83 [Journal] [PubMed]
Christensen BK, Spencer JM, King JP, Sekuler AB, Bennett PJ (2013) Noise as a mechanism of anomalous face processing among persons with Schizophrenia. Front Psychol 4:401 [Journal] [PubMed]
Cordeiro JM, Marieb M, Pfeiffer R, Calloe K, Burashnikov E, Antzelevitch C (2009) Accelerated inactivation of the L-type calcium current due to a mutation in CACNB2b underlies Brugada syndrome. J Mol Cell Cardiol 46:695-703 [PubMed]
Depil K, Beyl S, Stary-Weinzinger A, Hohaus A, Timin E, Hering S (2011) Timothy mutation disrupts the link between activation and inactivation in Ca(V)1.2 protein. J Biol Chem 286:31557-64 [Journal] [PubMed]
Duan AR, Varela C, Zhang Y, Shen Y, Xiong L, Wilson MA, Lisman J (2015) Delta frequency optogenetic stimulation of the thalamic nucleus reuniens is sufficient to produce working memory deficits: relevance to schizophrenia. Biol Psychiatry 77:1098-107 [Journal] [PubMed]
Empson RM, Akemann W, Knöpfel T (2010) The role of the calcium transporter protein plasma membrane calcium ATPase PMCA2 in cerebellar Purkinje neuron function. Funct Neurol 25:153-8 [PubMed]
Fakira AK, Gaspers LD, Thomas AP, Li H, Jain MR, Elkabes S (2012) Purkinje cell dysfunction and delayed death in plasma membrane calcium ATPase 2-heterozygous mice. Mol Cell Neurosci 51:22-31 [Journal] [PubMed]
Ficarella R, Di Leva F, Bortolozzi M, Ortolano S, Donaudy F, Petrillo M, Melchionda S, Lelli A, Domi T, Fedrizzi L, Lim D, Shull GE, Gasparini P, Brini M, Mammano F, Carafoli E (2007) A functional study of plasma-membrane calcium-pump isoform 2 mutants causing digenic deafness. Proc Natl Acad Sci U S A 104:1516-21 [Journal] [PubMed]
Giacomello M, De Mario A, Lopreiato R, Primerano S, Campeol M, Brini M, Carafoli E (2011) Mutations in PMCA2 and hereditary deafness: a molecular analysis of the pump defect. Cell Calcium 50:569-76 [Journal] [PubMed]
Gomora JC, Murbartián J, Arias JM, Lee JH, Perez-Reyes E (2002) Cloning and expression of the human T-type channel Ca(v)3.3: insights into prepulse facilitation. Biophys J 83:229-41 [PubMed]
Grienberger C, Adelsberger H, Stroh A, Milos RI, Garaschuk O, Schierloh A, Nelken I, Konnerth A (2012) Sound-evoked network calcium transients in mouse auditory cortex in vivo. J Physiol 590:899-918 [Journal] [PubMed]
Hohaus A, Beyl S, Kudrnac M, Berjukow S, Timin EN, Marksteiner R, Maw MA, Hering S (2005) Structural determinants of L-type channel activation in segment IIS6 revealed by a retinal disorder. J Biol Chem 280:38471-7 [Journal] [PubMed]
Hu D, Barajas-Martinez H, Nesterenko VV, Pfeiffer R, Guerchicoff A, Cordeiro JM, Curtis AB, Pollevick GD, Wu Y, Burashnikov E, Antzelevitch C (2010) Dual variation in SCN5A and CACNB2b underlies the development of cardiac conduction disease without Brugada syndrome. Pacing Clin Electrophysiol 33:274-85 [Journal] [PubMed]
Ishii TM, Nakashima N, Ohmori H (2007) Tryptophan-scanning mutagenesis in the S1 domain of mammalian HCN channel reveals residues critical for voltage-gated activation. J Physiol 579:291-301 [Journal] [PubMed]
Isom LL, De Jongh KS, Catterall WA (1994) Auxiliary subunits of voltage-gated ion channels. Neuron 12:1183-94 [PubMed]
Ji Y, Lalli MJ, Babu GJ, Xu Y, Kirkpatrick DL, Liu LH, Chiamvimonvat N, Walsh RA, Shull GE, Periasamy M (2000) Disruption of a single copy of the SERCA2 gene results in altered Ca2+ homeostasis and cardiomyocyte function. J Biol Chem 275:38073-80 [Journal] [PubMed]
Jolivet R, Schürmann F, Berger TK, Naud R, Gerstner W, Roth A (2008) The quantitative single-neuron modeling competition. Biol Cybern 99:417-26 [Journal] [PubMed]
Keogh E,Lonardi S,Ratanamahatana CA (2004) Towards parameter-free data mining Proceedings Of The Tenth ACM SIGKDD International Conference On Knowledge Discovery And Data Mining :206-215
Kudrnac M, Beyl S, Hohaus A, Stary A, Peterbauer T, Timin E, Hering S (2009) Coupled and independent contributions of residues in IS6 and IIS6 to activation gating of CaV1.2. J Biol Chem 284:12276-84 [Journal] [PubMed]
Li M,Chen X,Li X,Ma B,Vitány PMB (2004) The similarity metric IEEE Transactions On Information Theory 50:3250-3264
Lieb A, Scharinger A, Sartori S, Sinnegger-Brauns MJ, Striessnig J (2012) Structural determinants of CaV1.3 L-type calcium channel gating. Channels (Austin) 6:197-205 [Journal] [PubMed]
Link S, Meissner M, Held B, Beck A, Weissgerber P, Freichel M, Flockerzi V (2009) Diversity and developmental expression of L-type calcium channel beta2 proteins and their influence on calcium current in murine heart. J Biol Chem 284:30129-37 [Journal] [PubMed]
Lorincz ML, Gunner D, Bao Y, Connelly WM, Isaac JT, Hughes SW, Crunelli V (2015) A distinct class of slow (~0.2-2 Hz) intrinsically bursting layer 5 pyramidal neurons determines UP/DOWN state dynamics in the neocortex. J Neurosci 35:5442-58 [Journal] [PubMed]
Ma JY, Catterall WA, Scheuer T (1997) Persistent sodium currents through brain sodium channels induced by G protein betagamma subunits. Neuron 19:443-52 [PubMed]
Mäki-Marttunen T, Acimovic J, Nykter M, Kesseli J, Ruohonen K, Yli-Harja O, Linne ML (2011) Information diversity in structure and dynamics of simulated neuronal networks. Front Comput Neurosci 5:26 [Journal] [PubMed]
Mäki-Marttunen T, Halnes G, Devor A, Metzner C, Dale AM, Andreassen OA, Einevoll GT (2018) A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. J Neurosci Methods 293:264-283 [Journal] [PubMed]
   Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]
Mäki-Marttunen T, Kesseli J, Nykter M (2013) Balance between noise and information flow maximizes set complexity of network dynamics. PLoS One 8:e56523 [Journal] [PubMed]
Maki-Marttunen T,Kesseli J,Kauffman S,Yli-Harja O,Nykter M (2011) Of the complexity of boolean network state trajectories Eight International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, Zurich, Switzerland. TICSP series
Mantegazza M, Gambardella A, Rusconi R, Schiavon E, Annesi F, Cassulini RR, Labate A, Carrideo S, Chifari R, Canevini MP, Canger R, Franceschetti S, Annesi G, Wanke E, Quattrone A (2005) Identification of an Nav1.1 sodium channel (SCN1A) loss-of-function mutation associated with familial simple febrile seizures. Proc Natl Acad Sci U S A 102:18177-82 [Journal] [PubMed]
Massa E, Kelly KM, Yule DI, MacDonald RL, Uhler MD (1995) Comparison of fura-2 imaging and electrophysiological analysis of murine calcium channel alpha 1 subunits coexpressed with novel beta 2 subunit isoforms. Mol Pharmacol 47:707-16 [PubMed]
Metzner C, Schweikard A, Zurowski B (2016) Multifactorial Modeling of Impairment of Evoked Gamma Range Oscillations in Schizophrenia. Front Comput Neurosci 10:89 [Journal] [PubMed]
Murbartián J, Arias JM, Perez-Reyes E (2004) Functional impact of alternative splicing of human T-type Cav3.3 calcium channels. J Neurophysiol 92:3399-407 [Journal] [PubMed]
Nakazawa K, Zsiros V, Jiang Z, Nakao K, Kolata S, Zhang S, Belforte JE (2012) GABAergic interneuron origin of schizophrenia pathophysiology. Neuropharmacology 62:1574-83 [Journal] [PubMed]
Neske GT, Connors BW (2016) Distinct Roles of SOM and VIP Interneurons during Cortical Up States. Front Neural Circuits 10:52 [Journal] [PubMed]
Olney JW, Newcomer JW, Farber NB (1999) NMDA receptor hypofunction model of schizophrenia. J Psychiatr Res 33:523-33 [PubMed]
Pérez-Alvarez A, Hernández-Vivanco A, Caba-González JC, Albillos A (2011) Different roles attributed to Cav1 channel subtypes in spontaneous action potential firing and fine tuning of exocytosis in mouse chromaffin cells. J Neurochem 116:105-21 [Journal] [PubMed]
Phillips WA, Larkum ME, Harley CW, Silverstein SM (2016) The effects of arousal on apical amplification and conscious state. Neurosci Conscious 2016:niw015 [Journal] [PubMed]
Pinggera A, Lieb A, Benedetti B, Lampert M, Monteleone S, Liedl KR, Tuluc P, Striessnig J (2015) CACNA1D de novo mutations in autism spectrum disorders activate Cav1.3 L-type calcium channels. Biol Psychiatry 77:816-22 [Journal] [PubMed]
Ripke S, O'Dushlaine C, Chambert K, Moran JL, Kähler AK, Akterin S, Bergen SE, Collins AL, Crowley JJ, Fromer M, Kim Y, Lee SH, Magnusson PK, Sanchez N, Stahl EA, Williams S, Wray NR, Xia K, Bettella F, Borglum AD, Bulik-Sullivan BK, Cormican P, Craddock N, de Leeuw C, Durmishi N, Gill M, Golimbet V, Hamshere ML, Holmans P, Hougaard DM, Kendler KS, Lin K, Morris DW, Mors O, Mortensen PB, Neale BM, O'Neill FA, Owen MJ, Milovancevic MP, Posthuma D, Powell J, Richards AL, Riley BP, Ruderfer D, Rujescu D, Sigurdsson E, Silagadze T, Smit AB, Stefansson H, Steinberg S, Suvisaari J, Tosato S, Verhage M, Walters JT, Multicenter Genetic Studies of Schizophrenia Consortium , Levinson DF, Gejman PV, Kendler KS, Laurent C, Mowry BJ, O'Donovan MC, Owen MJ, Pulver AE, Riley BP, Schwab SG, Wildenauer DB, Dudbridge F, Holmans P, Shi J, Albus M, Alexander M, Campion D, Cohen D, Dikeos D, Duan J (2013) Genome-wide association analysis identifies 13 new risk loci for schizophrenia. Nat Genet 45:1150-9 [Journal] [PubMed]
Saha S, Chant D, Welham J, McGrath J (2005) A systematic review of the prevalence of schizophrenia. PLoS Med 2:e141 [Journal] [PubMed]
Sanchez-Vives MV, McCormick DA (2000) Cellular and network mechanisms of rhythmic recurrent activity in neocortex. Nat Neurosci 3:1027-34 [Journal] [PubMed]
Schizophrenia Working Group of the Psychiatric Genomics Consortium (2014) Biological insights from 108 schizophrenia-associated genetic loci. Nature 511:421-7 [Journal] [PubMed]
Shadlen MN, Newsome WT (1998) The variable discharge of cortical neurons: implications for connectivity, computation, and information coding. J Neurosci 18:3870-96 [Journal] [PubMed]
Silverstein SM, Wibral M, Phillips WA (2017) Implications of Information Theory for Computational Modeling of Schizophrenia. Comput Psychiatr 1:82-101 [Journal] [PubMed]
Smolin B, Karry R, Gal-Ben-Ari S, Ben-Shachar D (2012) Differential expression of genes encoding neuronal ion-channel subunits in major depression, bipolar disorder and schizophrenia: implications for pathophysiology. Int J Neuropsychopharmacol 15:869-82 [Journal] [PubMed]
Spitzer M, Neumann M (1996) Noise in models of neurological and psychiatric disorders. Int J Neural Syst 7:355-61 [PubMed]
Sponheim SR, Clementz BA, Iacono WG, Beiser M (1994) Resting EEG in first-episode and chronic schizophrenia. Psychophysiology 31:37-43 [PubMed]
Stary A, Kudrnac M, Beyl S, Hohaus A, Timin EN, Wolschann P, Guy HR, Hering S (2008) Molecular dynamics and mutational analysis of a channelopathy mutation in the IIS6 helix of Ca V 1.2. Channels (Austin) 2:216-23 [PubMed]
Stocker M (2004) Ca(2+)-activated K+ channels: molecular determinants and function of the SK family. Nat Rev Neurosci 5:758-70 [Journal] [PubMed]
Sun Z, Williams DJ, Xu B, Gogos JA (2018) Altered function and maturation of primary cortical neurons from a 22q11.2 deletion mouse model of schizophrenia. Transl Psychiatry 8:85 [Journal] [PubMed]
Tan BZ, Jiang F, Tan MY, Yu D, Huang H, Shen Y, Soong TW (2011) Functional characterization of alternative splicing in the C terminus of L-type CaV1.3 channels. J Biol Chem 286:42725-35 [Journal] [PubMed]
Tang ZZ, Liang MC, Lu S, Yu D, Yu CY, Yue DT, Soong TW (2004) Transcript scanning reveals novel and extensive splice variations in human l-type voltage-gated calcium channel, Cav1.2 alpha1 subunit. J Biol Chem 279:44335-43 [Journal] [PubMed]
Theunissen F, Miller JP (1995) Temporal encoding in nervous systems: a rigorous definition. J Comput Neurosci 2:149-62 [PubMed]
Tuomo M,aki-Marttunen Geir,Halnes Anna,Devor Aree,Witoelar Francesco,Bettella Srdjan,Djurovic Yunpeng,Wang Gaute T,Einevoll Ole A,Andreassen Anders M,Dale (2016) Functional effects of schizophrenia-linked genetic variants on intrinsic single-neuron excitability: A modeling study Biol Psychiatry Cogn Neurosci Neuroim 1:49-59
Turetsky BI, Bilker WB, Siegel SJ, Kohler CG, Gur RE (2009) Profile of auditory information-processing deficits in schizophrenia. Psychiatry Res 165:27-37 [Journal] [PubMed]
Turetsky BI, Calkins ME, Light GA, Olincy A, Radant AD, Swerdlow NR (2007) Neurophysiological endophenotypes of schizophrenia: the viability of selected candidate measures. Schizophr Bull 33:69-94 [Journal] [PubMed]
Vanmolkot KR, Babini E, de Vries B, Stam AH, Freilinger T, Terwindt GM, Norris L, Haan J, Frants RR, Ramadan NM, Ferrari MD, Pusch M, van den Maagdenberg AM, Dichgans M (2007) The novel p.L1649Q mutation in the SCN1A epilepsy gene is associated with familial hemiplegic migraine: genetic and functional studies. Mutation in brief #957. Online. Hum Mutat 28:522 [Journal] [PubMed]
Volkers L, Kahlig KM, Verbeek NE, Das JH, van Kempen MJ, Stroink H, Augustijn P, van Nieuwenhuizen O, Lindhout D, George AL, Koeleman BP, Rook MB (2011) Nav 1.1 dysfunction in genetic epilepsy with febrile seizures-plus or Dravet syndrome. Eur J Neurosci 34:1268-75 [Journal] [PubMed]
Whitaker WR, Clare JJ, Powell AJ, Chen YH, Faull RL, Emson PC (2000) Distribution of voltage-gated sodium channel alpha-subunit and beta-subunit mRNAs in human hippocampal formation, cortex, and cerebellum. J Comp Neurol 422:123-39 [Journal] [PubMed]
Wilson C (2008) Up and down states. Scholarpedia J 3:1410 [PubMed]
Zhang Q, Timofeyev V, Qiu H, Lu L, Li N, Singapuri A, Torado CL, Shin HS, Chiamvimonvat N (2011) Expression and roles of Cav1.3 (a1D) L-type Ca²+ channel in atrioventricular node automaticity. J Mol Cell Cardiol 50:194-202 [Journal] [PubMed]
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