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Sim CK, Forger DB (2007) Modeling the electrophysiology of suprachiasmatic nucleus neurons. J Biol Rhythms 22:445-53 [PubMed]

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References and models that cite this paper

Achermann P, Kunz H (1999) Modeling circadian rhythm generation in the suprachiasmatic nucleus with locally coupled self-sustained oscillators: phase shifts and phase response curves. J Biol Rhythms 14:460-8 [Journal] [PubMed]
Antle MC, Foley DK, Foley NC, Silver R (2003) Gates and oscillators: a network model of the brain clock. J Biol Rhythms 18:339-50 [Journal] [PubMed]
Baxter DA, Canavier CC, Clark JW, Byrne JH (1999) Computational model of the serotonergic modulation of sensory neurons in Aplysia. J Neurophysiol 82:2914-35 [Journal] [PubMed]
   Serotonergic modulation of Aplysia sensory neurons (Baxter et al 1999) [Model]
Bouskila Y, Dudek FE (1995) A rapidly activating type of outward rectifier K+ current and A-current in rat suprachiasmatic nucleus neurones. J Physiol 488 ( Pt 2):339-50 [PubMed]
Cloues RK, Sather WA (2003) Afterhyperpolarization regulates firing rate in neurons of the suprachiasmatic nucleus. J Neurosci 23:1593-604 [PubMed]
de la Iglesia HO, Cambras T, Schwartz WJ, Díez-Noguera A (2004) Forced desynchronization of dual circadian oscillators within the rat suprachiasmatic nucleus. Curr Biol 14:796-800 [Journal] [PubMed]
de la Iglesia HO, Meyer J, Carpino A, Schwartz WJ (2000) Antiphase oscillation of the left and right suprachiasmatic nuclei. Science 290:799-801 [PubMed]
Deboer T, Vansteensel MJ, Détári L, Meijer JH (2003) Sleep states alter activity of suprachiasmatic nucleus neurons. Nat Neurosci 6:1086-90 [Journal] [PubMed]
Forger D, Gonze D, Virshup D, Welsh DK (2007) Beyond intuitive modeling: combining biophysical models with innovative experiments to move the circadian clock field forward. J Biol Rhythms 22:200-10 [Journal] [PubMed]
Forger DB, Jewett ME, Kronauer RE (1999) A simpler model of the human circadian pacemaker. J Biol Rhythms 14:532-7 [PubMed]
Forger DB, Peskin CS (2003) A detailed predictive model of the mammalian circadian clock. Proc Natl Acad Sci U S A 100:14806-11 [Journal] [PubMed]
Forger DB, Peskin CS (2005) Stochastic simulation of the mammalian circadian clock. Proc Natl Acad Sci U S A 102:321-4 [Journal] [PubMed]
Gallego M, Eide EJ, Woolf MF, Virshup DM, Forger DB (2006) An opposite role for tau in circadian rhythms revealed by mathematical modeling. Proc Natl Acad Sci U S A 103:10618-23 [Journal] [PubMed]
Gompf HS, Allen CN (2004) GABAergic synapses of the suprachiasmatic nucleus exhibit a diurnal rhythm of short-term synaptic plasticity. Eur J Neurosci 19:2791-8 [Journal] [PubMed]
Hill S, Tononi G (2005) Modeling sleep and wakefulness in the thalamocortical system. J Neurophysiol 93:1671-98 [Journal] [PubMed]
Ikeda M, Sugiyama T, Wallace CS, Gompf HS, Yoshioka T, Miyawaki A, Allen CN (2003) Circadian dynamics of cytosolic and nuclear Ca2+ in single suprachiasmatic nucleus neurons. Neuron 38:253-63 [PubMed]
Itri JN, Michel S, Vansteensel MJ, Meijer JH, Colwell CS (2005) Fast delayed rectifier potassium current is required for circadian neural activity. Nat Neurosci 8:650-6 [Journal] [PubMed]
Jackson AC, Yao GL, Bean BP (2004) Mechanism of spontaneous firing in dorsomedial suprachiasmatic nucleus neurons. J Neurosci 24:7985-98 [Journal] [PubMed]
Jobst EE, Robinson DW, Allen CN (2004) Potential pathways for intercellular communication within the calbindin subnucleus of the hamster suprachiasmatic nucleus. Neuroscience 123:87-99 [PubMed]
Keener J, Sneyd J (1998) Mathematical Physiology Interdisciplinary Applied Mathematics
Kim SI, Jeong J, Kwak Y, Kim YI, Jung SH, Lee KJ (2005) Fractal stochastic modeling of spiking activity in suprachiasmatic nucleus neurons. J Comput Neurosci 19:39-51 [Journal] [PubMed]
Koch C (1999) Biophysics Of Computation: Information Processing in Single Neurons
Kononenko NI, Dudek FE (2004) Mechanism of irregular firing of suprachiasmatic nucleus neurons in rat hypothalamic slices. J Neurophysiol 91:267-73 [Journal] [PubMed]
Kononenko NI, Dudek FE (2005) Noise of the slowly inactivating Na current in suprachiasmatic nucleus neurons. Neuroreport 16:981-5 [PubMed]
Kononenko NI, Dudek FE (2006) Persistent calcium current in rat suprachiasmatic nucleus neurons. Neuroscience 138:377-88 [Journal] [PubMed]
Kononenko NI, Shao LR, Dudek FE (2004) Riluzole-sensitive slowly inactivating sodium current in rat suprachiasmatic nucleus neurons. J Neurophysiol 91:710-8 [Journal] [PubMed]
Kronauer RE, Forger DB, Jewett ME (1999) Quantifying human circadian pacemaker response to brief, extended, and repeated light stimuli over the phototopic range. J Biol Rhythms 14:500-15 [PubMed]
Leloup JC, Goldbeter A (2003) Toward a detailed computational model for the mammalian circadian clock. Proc Natl Acad Sci U S A 100:7051-6 [Journal] [PubMed]
Lindblad DS, Murphey CR, Clark JW, Giles WR (1996) A model of the action potential and underlying membrane currents in a rabbit atrial cell. Am J Physiol 271:H1666-96 [Journal] [PubMed]
Lipscombe D, Helton TD, Xu W (2004) L-type calcium channels: the low down. J Neurophysiol 92:2633-41 [Journal] [PubMed]
Locke JC, Southern MM, Kozma-Bognár L, Hibberd V, Brown PE, Turner MS, Millar AJ (2005) Extension of a genetic network model by iterative experimentation and mathematical analysis. Mol Syst Biol 1:2005.0013 [Journal] [PubMed]
Low-Zeddies SS, Takahashi JS (2001) Chimera analysis of the Clock mutation in mice shows that complex cellular integration determines circadian behavior. Cell 105:25-42 [PubMed]
Meijer JH, Watanabe K, Schaap J, Albus H, Détári L (1998) Light responsiveness of the suprachiasmatic nucleus: long-term multiunit and single-unit recordings in freely moving rats. J Neurosci 18:9078-87 [PubMed]
Miller JD, Fuller CA (1992) Isoperiodic neuronal activity in suprachiasmatic nucleus of the rat. Am J Physiol 263:R51-8 [Journal] [PubMed]
Nygren A, Fiset C, Firek L, Clark JW, Lindblad DS, Clark RB, Giles WR (1998) Mathematical model of an adult human atrial cell: the role of K+ currents in repolarization. Circ Res 82:63-81 [PubMed]
Oster H (2006) The genetic basis of circadian behavior. Genes Brain Behav 5 Suppl 2:73-9 [Journal] [PubMed]
Paydarfar D, Buerkel DM (1997) Sporadic apnea: paradoxical transformation to eupnea by perturbations that inhibit inspiration. Med Hypotheses 49:19-26 [PubMed]
Paydarfar D, Forger DB, Clay JR (2006) Noisy inputs and the induction of on-off switching behavior in a neuronal pacemaker. J Neurophysiol 96:3338-48 [Journal] [PubMed]
Pennartz CM, Bierlaagh MA, Geurtsen AM (1997) Cellular mechanisms underlying spontaneous firing in rat suprachiasmatic nucleus: involvement of a slowly inactivating component of sodium current. J Neurophysiol 78:1811-25 [Journal] [PubMed]
Pennartz CM, de Jeu MT, Bos NP, Schaap J, Geurtsen AM (2002) Diurnal modulation of pacemaker potentials and calcium current in the mammalian circadian clock. Nature 416:286-90 [Journal] [PubMed]
Pitts GR, Ohta H, McMahon DG (2006) Daily rhythmicity of large-conductance Ca2+ -activated K+ currents in suprachiasmatic nucleus neurons. Brain Res 1071:54-62 [Journal] [PubMed]
Rinzel J, Ermentrout B (1998) Analysis of neural excitability and oscillations. Methods In Neuronal Modeling 2nd Edition, Segev I, Koch C, ed. pp.251
Schaap J, Albus H, VanderLeest HT, Eilers PH, Détári L, Meijer JH (2003) Heterogeneity of rhythmic suprachiasmatic nucleus neurons: Implications for circadian waveform and photoperiodic encoding. Proc Natl Acad Sci U S A 100:15994-9 [Journal] [PubMed]
Shirakawa T, Honma S, Katsuno Y, Oguchi H, Honma KI (2000) Synchronization of circadian firing rhythms in cultured rat suprachiasmatic neurons. Eur J Neurosci 12:2833-8 [PubMed]
Teshima K, Kim SH, Allen CN (2003) Characterization of an apamin-sensitive potassium current in suprachiasmatic nucleus neurons. Neuroscience 120:65-73 [PubMed]
Walsh IB, van den Berg RJ, Marani E, Rietveld WJ (1992) Spontaneous and stimulated firing in cultured rat suprachiasmatic neurons. Brain Res 588:120-31 [PubMed]
Walsh IB, van den Berg RJ, Rietveld WJ (1995) Ionic currents in cultured rat suprachiasmatic neurons. Neuroscience 69:915-29 [PubMed]
Winfree AT (1980) The geometry of biological time.
Yamaguchi S, Isejima H, Matsuo T, Okura R, Yagita K, Kobayashi M, Okamura H (2003) Synchronization of cellular clocks in the suprachiasmatic nucleus. Science 302:1408-12 [Journal] [PubMed]
DeWoskin D, Myung J, Belle MD, Piggins HD, Takumi T, Forger DB (2015) Distinct roles for GABA across multiple timescales in mammalian circadian timekeeping. Proc Natl Acad Sci U S A 112:E3911-9 [Journal] [PubMed]
   HH model neuron of the Suprachiasmatic Nucleus including a persistent Na+ channel (Paul et al 2016) [Model]
Paul JR, DeWoskin D, McMeekin LJ, Cowell RM, Forger DB, Gamble KL (2016) Regulation of persistent sodium currents by glycogen synthase kinase 3 encodes daily rhythms of neuronal excitability. Nat Commun 7:13470 [Journal] [PubMed]
   HH model neuron of the Suprachiasmatic Nucleus including a persistent Na+ channel (Paul et al 2016) [Model]
Smith P, Buhl E, Tsaneva-Atanasova K, Hodge JJL (2019) Shaw and Shal voltage-gated potassium channels mediate circadian changes in Drosophila clock neuron excitability. J Physiol 597:5707-5722 [Journal] [PubMed]
   Drosophila lateral ventral clock neuron (LNV) model (Smith et al 2019) [Model]
Vasalou C, Henson MA (2010) A multiscale model to investigate circadian rhythmicity of pacemaker neurons in the suprachiasmatic nucleus. PLoS Comput Biol 6:e1000706 [Journal] [PubMed]
   A multiscale approach to analyze circadian rhythms (Vasalou & Henson, 2010) (CellML) [Model]
   A multiscale approach to analyze circadian rhythms (Vasalou & Henson, 2010) (SBML) [Model]
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