Akemann W, Lundby A, Mutoh H, Knöpfel T (2009) Effect of voltage sensitive fluorescent proteins on neuronal excitability. Biophys J 96:3959-76 [Journal] [PubMed]

•	Effect of voltage sensitive fluorescent proteins on neuronal excitability (Akemann et al. 2009) [Model]

Anwar H, Hepburn I, Nedelescu H, Chen W, De Schutter E (2013) Stochastic calcium mechanisms cause dendritic calcium spike variability. J Neurosci 33:15848-67 [Journal] [PubMed]

•	Stochastic calcium mechanisms cause dendritic calcium spike variability (Anwar et al. 2013) [Model]

Bahl A, Stemmler MB, Herz AV, Roth A (2012) Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data. J Neurosci Methods 210:22-34 [Journal] [PubMed]

•	A set of reduced models of layer 5 pyramidal neurons (Bahl et al. 2012) [Model]

Brazhe AR, Maksimov GV, Mosekilde E, Sosnovtseva O (2010) Excitation block in a nerve fibre model owing to potassium-dependent changes in myelin resistance Journal of Interface Focus 1(1):86-100 [Journal]

•	Myelinated nerve fibre myelin resistance dependent on extracellular K+ level (Brazhe et al. 2010) [Model]

Brown AM (2003) A modeling study predicts the presence of voltage gated Ca2+ channels on myelinated central axons. Comput Methods Programs Biomed 71:25-31 [PubMed]

•	Prediction for the presence of voltage-gated Ca2+ channels in myelinated central axons (Brown 2003) [Model]

Cannon RC, O'Donnell C, Nolan MF (2010) Stochastic ion channel gating in dendritic neurons: morphology dependence and probabilistic synaptic activation of dendritic spikes. PLoS Comput Biol [Journal] [PubMed]

•	Stochastic ion channels and neuronal morphology (Cannon et al. 2010) [Model]

Chen BS, Lo YC, Lius YC, Wu SN (2010) Effects of transient receptor potential-like current on the firing pattern of action potentials in the Hodgkin-Huxley neuron during exposure to sinusoidal external voltage. Chin J Physiol 53:423-9 [Journal] [PubMed]

•	Effect of trp-like current on APs during exposure to sinusoidal voltage (Chen et al. 2010) [Model]
•	Squid axon (Hodgkin, Huxley 1952) used in (Chen et al 2010) (R language) [Model]

Clay JR, Paydarfar D, Forger DB (2008) A simple modification of the Hodgkin and Huxley equations explains type 3 excitability in squid giant axons. J R Soc Interface 5:1421-8 [Journal] [PubMed]

•	Model of Type 3 firing in neurons (Clay et al 2008) [Model]

Conte C, Lee R, Sarkar M, Terman D (2018) A mathematical model of recurrent spreading depolarizations. J Comput Neurosci 44:203-217 [Journal] [PubMed]

•	A model for recurrent spreading depolarizations (Conte et al. 2017) [Model]

De Schutter E (2014) The dangers of plug-and-play simulation using shared models. Neuroinformatics 12:227-8 [Journal] [PubMed]

Dougalis AG, Matthews GAC, Liss B, Ungless MA (2017) Ionic currents influencing spontaneous firing and pacemaker frequency in dopamine neurons of the ventrolateral periaqueductal gray and dorsal raphe nucleus (vlPAG/DRN): A voltage-clamp and computational modelling study. J Comput Neurosci 42:275-305 [Journal] [PubMed]

•	Dopamine neuron of the vent. periaqu. gray and dors. raphe nucleus (vlPAG/DRN) (Dougalis et al 2017) [Model]

Doyon N, Prescott SA, Castonguay A, Godin AG, Kröger H, De Koninck Y (2011) Efficacy of synaptic inhibition depends on multiple, dynamically interacting mechanisms implicated in chloride homeostasis. PLoS Comput Biol 7:e1002149 [Journal] [PubMed]

Ermentrout GB, Terman DH (2010) Mathematical Foundations of Neuroscience Interdisciplinary Applied Mathematics, Antman SS:Marsden JE:Sirovich L:Wiggins, ed. pp.1 [Journal]

•	Mathematical Foundations of Neuroscience (Ermentrout and Terman 2010) [Model]

Fineberg JD, Ritter DM, Covarrubias M (2012) Modeling-independent elucidation of inactivation pathways in recombinant and native A-type Kv channels. J Gen Physiol 140:513-27 [Journal] [PubMed]

•	Neurophysiological impact of inactivation pathways in A-type K+ channels (Fineberg et al 2012) [Model]

Forrest MD (2015) Simulation of alcohol action upon a detailed Purkinje neuron model and a simpler surrogate model that runs >400 times faster. BMC Neurosci 16:27 [Journal] [PubMed]

•	Alcohol action in a detailed Purkinje neuron model and an efficient simplified model (Forrest 2015) [Model]

Franci A, Drion G, Sepulchre R (2018) Robust and tunable bursting requires slow positive feedback. J Neurophysiol 119:1222-1234 [Journal] [PubMed]

•	Robust and tunable bursting requires slow positive feedback (Franci et al 2018) [Model]

Gabbiani F, Cox SJ (2010) Mathematics for Neuroscientists :1-486 [Journal]

•	Mathematics for Neuroscientists (Gabbiani and Cox 2010) [Model]

Goldwyn JH, Imennov NS, Famulare M, Shea-Brown E (2011) Stochastic differential equation models for ion channel noise in Hodgkin-Huxley neurons. Phys Rev E Stat Nonlin Soft Matter Phys 83:041908 [Journal] [PubMed]

•	On stochastic diff. eq. models for ion channel noise in Hodgkin-Huxley neurons (Goldwyn et al. 2010) [Model]

Goldwyn JH, Shea-Brown E (2011) The what and where of adding channel noise to the Hodgkin-Huxley equations. PLoS Comput Biol 7:e1002247 [Journal] [PubMed]

•	Stochastic versions of the Hodgkin-Huxley equations (Goldwyn, Shea-Brown 2011) (pylab) [Model]
•	Stochastic versions of the Hodgkin-Huxley equations (Goldwyn, Shea-Brown 2011) [Model]

Gorin M, Tsitoura C, Kahan A, Watznauer K, Drose DR, Arts M, Mathar R, O'Connor S, Hanganu-Opatz IL, Ben-Shaul Y, Spehr M (2016) Interdependent Conductances Drive Infraslow Intrinsic Rhythmogenesis in a Subset of Accessory Olfactory Bulb Projection Neurons. J Neurosci 36:3127-44 [Journal] [PubMed]

•	Infraslow intrinsic rhythmogenesis in a subset of AOB projection neurons (Gorin et al 2016) [Model]

Huang S, Hong S, De Schutter E (2015) Non-linear leak currents affect mammalian neuron physiology. Front Cell Neurosci 9:432 [Journal] [PubMed]

•	Concentration dependent nonlinear K+ and Cl- leak current (Huang et al. 2015) [Model]

Kilinc D, Demir A (2017) Noise in Neuronal and Electronic Circuits: A General Modeling Framework and Non-Monte Carlo Simulation Techniques. IEEE Trans Biomed Circuits Syst 11:958-974 [Journal] [PubMed]

•	A neuronal circuit simulator for non Monte Carlo analysis of neuronal noise (Kilinc & Demir 2018) [Model]

Kilinc D,Demir A (2015) Simulation of noise in neurons and neuronal circuits Proceedings of the IEEE/ACM international conference on computer-aided design (ICCAD) :589-596 [Journal]

•	A neuronal circuit simulator for non Monte Carlo analysis of neuronal noise (Kilinc & Demir 2018) [Model]

Kobayashi R, Tsubo Y, Shinomoto S (2009) Made-to-order spiking neuron model equipped with a multi-timescale adaptive threshold. Front Comput Neurosci 3:9 [Journal] [PubMed]

•	Multi-timescale adaptive threshold model (Kobayashi et al 2009) (NEURON) [Model]
•	Multi-timescale adaptive threshold model (Kobayashi et al 2009) [Model]

Kufel DS, Wojcik GM (2018) Analytical modelling of temperature effects on an AMPA-type synapse. J Comput Neurosci 44:379-391 [Journal] [PubMed]

•	Analytical modelling of temperature effects on an AMPA-type synapse (Kufel & Wojcik 2018) [Model]

Kurian M, Crook SM, Jung R (2011) Motoneuron model of self-sustained firing after spinal cord injury. J Comput Neurosci 31:625-45 [Journal] [PubMed]

•	Motoneuron model of self-sustained firing after spinal cord injury (Kurian et al. 2011) [Model]

Lamb DG, Calabrese RL (2013) Correlated conductance parameters in leech heart motor neurons contribute to motor pattern formation. PLoS One 8:e79267 [Journal] [PubMed]

•	Leech Heart (HE) Motor Neuron conductances contributions to NN activity (Lamb & Calabrese 2013) [Model]

Le Franc Y, Le Masson G (2010) Multiple firing patterns in deep dorsal horn neurons of the spinal cord: computational analysis of mechanisms and functional implications. J Neurophysiol 104:1978-96 [Journal] [PubMed]

Lopreore CL, Bartol TM, Coggan JS, Keller DX, Sosinsky GE, Ellisman MH, Sejnowski TJ (2008) Computational modeling of three-dimensional electrodiffusion in biological systems: application to the node of Ranvier. Biophys J 95:2624-35 [Journal] [PubMed]

Luthman J, Hoebeek FE, Maex R, Davey N, Adams R, De Zeeuw CI, Steuber V (2011) STD-dependent and independent encoding of input irregularity as spike rate in a computational model of a cerebellar nucleus neuron. Cerebellum 10:667-82 [Journal] [PubMed]

•	Robust transmission in the inhibitory Purkinje Cell to Cerebellar Nuclei pathway (Abbasi et al 2017) [Model]
•	STD-dependent and independent encoding of Input irregularity as spike rate (Luthman et al. 2011) [Model]

Martínez-Cañada P, Morillas C, Pino B, Ros E, Pelayo F (2016) A Computational Framework for Realistic Retina Modeling. Int J Neural Syst 26:1650030 [Journal] [PubMed]

•	COREM: configurable retina simulator (Martínez-Cañada et al., 2016) [Model]

Menon V, Spruston N, Kath WL (2009) A state-mutating genetic algorithm to design ion-channel models. Proc Natl Acad Sci U S A 106:16829-34 [Journal] [PubMed]

•	Hippocampus CA1 pyramidal model with Na channel exhibiting slow inactivation (Menon et al. 2009) [Model]

Olivares E, Salgado S, Maidana JP, Herrera G, Campos M, Madrid R, Orio P (2015) TRPM8-Dependent Dynamic Response in a Mathematical Model of Cold Thermoreceptor. PLoS One 10:e0139314 [Journal] [PubMed]

•	TRPM8-dependent dynamic response in cold thermoreceptors (Olivares et al. 2015) [Model]

Orio P, Parra A, Madrid R, González O, Belmonte C, Viana F (2012) Role of Ih in the firing pattern of mammalian cold thermoreceptor endings. J Neurophysiol 108:3009-23 [Journal] [PubMed]

•	Role of Ih in firing patterns of cold thermoreceptors (Orio et al., 2012) [Model]

Platkiewicz J, Brette R (2010) A threshold equation for action potential initiation. PLoS Comput Biol 6:e1000850 [Journal] [PubMed]

•	A threshold equation for action potential initiation (Platkiewicz & Brette 2010) [Model]

Platkiewicz J, Brette R (2011) Impact of fast sodium channel inactivation on spike threshold dynamics and synaptic integration. PLoS Comput Biol 7:e1001129 [Journal] [PubMed]

•	Impact of fast Na channel inact. on AP threshold & synaptic integration (Platkiewicz & Brette 2011) [Model]

Schmerl BA, McDonnell MD (2013) Channel noise induced stochastic facilitation in an auditory brainstem neuron model Physical Review E 88:052722 [Journal] [PubMed]

•	Simulating ion channel noise in an auditory brainstem neuron model (Schmerl & McDonnell 2013) [Model]

Singh C, Levy WB (2017) A consensus layer V pyramidal neuron can sustain interpulse-interval coding. PLoS One 12:e0180839 [Journal] [PubMed]

•	Stochastic layer V pyramidal neuron: interpulse interval coding and noise (Singh & Levy 2017) [Model]

Somjen GG, Kager H, Wadman WJ (2009) Calcium sensitive non-selective cation current promotes seizure-like discharges and spreading depression in a model neuron. J Comput Neurosci 26:139-47 [Journal] [PubMed]

Soudry D, Meir R (2014) The neuronal response at extended timescales: a linearized spiking input-output relation. Front Comput Neurosci 8:29 [Journal] [PubMed]

•	Method for deriving general HH neuron model`s spiking input-output relation (Soudry & Meir 2014) [Model]

Stanley DA, Bardakjian BL, Spano ML, Ditto WL (2011) Stochastic amplification of calcium-activated potassium currents in Ca2+ microdomains. J Comput Neurosci 31:647-66 [Journal] [PubMed]

•	CA1 pyramidal: Stochastic amplification of KCa in Ca2+ microdomains (Stanley et al. 2011) [Model]

Sterratt D, Graham B, Gillies A, Willshaw D (2011) Principles of Computational Modelling in Neuroscience, Cambridge University Press :1-401 [Journal]

•	Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) [Model]

Steuber V, Schultheiss NW, Silver RA, De Schutter E, Jaeger D (2011) Determinants of synaptic integration and heterogeneity in rebound firing explored with data-driven models of deep cerebellar nucleus cells. J Comput Neurosci 30:633-58 [Journal] [PubMed]

•	Cerebellar Nucleus Neuron (Steuber, Schultheiss, Silver, De Schutter & Jaeger, 2010) [Model]
•	Robust transmission in the inhibitory Purkinje Cell to Cerebellar Nuclei pathway (Abbasi et al 2017) [Model]

Stiefel KM, Englitz B, Sejnowski TJ (2013) Origin of intrinsic irregular firing in cortical interneurons. Proc Natl Acad Sci U S A 110:7886-91 [Journal] [PubMed]

Thomas EA, Petrou S (2013) Network-specific mechanisms may explain the paradoxical effects of carbamazepine and phenytoin. Epilepsia 54:1195-202 [Journal] [PubMed]

•	State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013) [Model]

Van Pottelbergh T, Drion G, Sepulchre R (2018) Robust Modulation of Integrate-and-Fire Models. Neural Comput 30:987-1011 [Journal] [PubMed]

•	Robust modulation of integrate-and-fire models (Van Pottelbergh et al 2018) [Model]

Zhou Y, Colburn HS (2010) A modeling study of the effects of membrane afterhyperpolarization on spike interval statistics and on ILD encoding in the lateral superior olive. J Neurophysiol 103:2355-71 [Journal] [PubMed]

•	Effects of the membrane AHP on the Lateral Superior Olive (LSO) (Zhou & Colburn 2010) [Model]