Citation Relationships

Legends: Link to a Model Reference cited by multiple papers


Grossman N, Nikolic K, Toumazou C, Degenaar P (2011) Modeling study of the light stimulation of a neuron cell with channelrhodopsin-2 mutants. IEEE Trans Biomed Eng 58:1742-51 [PubMed]

References and models cited by this paper

References and models that cite this paper

Alilain WJ, Li X, Horn KP, Dhingra R, Dick TE, Herlitze S, Silver J (2008) Light-induced rescue of breathing after spinal cord injury. J Neurosci 28:11862-70 [Journal] [PubMed]
Arenkiel BR, Peca J, Davison IG, Feliciano C, Deisseroth K, Augustine GJ, Ehlers MD, Feng G (2007) In vivo light-induced activation of neural circuitry in transgenic mice expressing channelrhodopsin-2. Neuron 54:205-18 [Journal] [PubMed]
Bamann C, Kirsch T, Nagel G, Bamberg E (2008) Spectral characteristics of the photocycle of channelrhodopsin-2 and its implication for channel function. J Mol Biol 375:686-94 [Journal] [PubMed]
Bamberg E, Bamann C, Feldbauer K, Kleinlogel S, Spitz J, Zimmermann D, Woods P, Nagel G (2008) Channelrhodopsins: Molecular properties and applications, in Short Course I, Optical Control of Neural Excitability Society For Neuroscience, Keshishian H, ed. pp.15
Berndt A, Yizhar O, Gunaydin LA, Hegemann P, Deisseroth K (2009) Bi-stable neural state switches. Nat Neurosci 12:229-34 [Journal] [PubMed]
Boyden ES, Zhang F, Bamberg E, Nagel G, Deisseroth K (2005) Millisecond-timescale, genetically targeted optical control of neural activity. Nat Neurosci 8:1263-8 [Journal] [PubMed]
Chow BY, Han X, Dobry AS, Qian X, Chuong AS, Li M, Henninger MA, Belfort GM, Lin Y, Monahan PE, Boyden ES (2010) High-performance genetically targetable optical neural silencing by light-driven proton pumps. Nature 463:98-102 [Journal] [PubMed]
Degenaar P, Grossman N, Memon MA, Burrone J, Dawson M, Drakakis E, Neil M, Nikolic K (2009) Optobionic vision--a new genetically enhanced light on retinal prosthesis. J Neural Eng 6:035007 [Journal] [PubMed]
Ernst OP, Sánchez Murcia PA, Daldrop P, Tsunoda SP, Kateriya S, Hegemann P (2008) Photoactivation of channelrhodopsin. J Biol Chem 283:1637-43 [Journal] [PubMed]
Hegemann P (1997) Vision in microalgae. Planta 203:265-74 [Journal] [PubMed]
Hegemann P, Ehlenbeck S, Gradmann D (2005) Multiple photocycles of channelrhodopsin. Biophys J 89:3911-8 [Journal] [PubMed]
Hegemann P, Gärtner W, Uhl R (1991) All-trans retinal constitutes the functional chromophore in Chlamydomonas rhodopsin. Biophys J 60:1477-89 [Journal] [PubMed]
Ishizuka T, Kakuda M, Araki R, Yawo H (2006) Kinetic evaluation of photosensitivity in genetically engineered neurons expressing green algae light-gated channels. Neurosci Res 54:85-94 [Journal] [PubMed]
Lagali PS, Balya D, Awatramani GB, Münch TA, Kim DS, Busskamp V, Cepko CL, Roska B (2008) Light-activated channels targeted to ON bipolar cells restore visual function in retinal degeneration. Nat Neurosci 11:667-75 [Journal] [PubMed]
Li X, Gutierrez DV, Hanson MG, Han J, Mark MD, Chiel H, Hegemann P, Landmesser LT, Herlitze S (2005) Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin. Proc Natl Acad Sci U S A 102:17816-21 [Journal] [PubMed]
Lin JY, Lin MZ, Steinbach P, Tsien RY (2009) Characterization of engineered channelrhodopsin variants with improved properties and kinetics. Biophys J 96:1803-14 [Journal] [PubMed]
Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, Ollig D, Hegemann P, Bamberg E (2003) Channelrhodopsin-2, a directly light-gated cation-selective membrane channel. Proc Natl Acad Sci U S A 100:13940-5 [Journal] [PubMed]
Nikolic K, Degenaar P, Toumazou C (2006) Modeling and engineering aspects of channelrhodopsin2 system for neural photostimulation. Conf Proc IEEE Eng Med Biol Soc 1:1626-9 [Journal] [PubMed]
Nikolic K, Grossman N, Grubb MS, Burrone J, Toumazou C, Degenaar P (2009) Photocycles of channelrhodopsin-2. Photochem Photobiol 85:400-11 [Journal] [PubMed]
Poher V, Grossman N, Kennedy GT, Nikolic K, Zhang HX, Gong Z, Drakakis EM, Gu E, Dawson MD, F (2008) Micro-LED arrays: A tool for two-dimensional neuron stimulation J Phys D-appl Phys 41:9-9
Ritter E, Stehfest K, Berndt A, Hegemann P, Bartl FJ (2008) Monitoring light-induced structural changes of Channelrhodopsin-2 by UV-visible and Fourier transform infrared spectroscopy. J Biol Chem 283:35033-41 [Journal] [PubMed]
Stehfest K, Hegemann P (2010) Evolution of the channelrhodopsin photocycle model. Chemphyschem 11:1120-6 [Journal] [PubMed]
Stehfest K, Ritter E, Berndt A, Bartl F, Hegemann P (2010) The branched photocycle of the slow-cycling channelrhodopsin-2 mutant C128T. J Mol Biol 398:690-702 [Journal] [PubMed]
Tour O, Parnas H, Parnas I (1998) Depolarization increases the single-channel conductance and the open probability of crayfish glutamate channels. Biophys J 74:1767-78 [Journal] [PubMed]
Traub RD, Wong RK, Miles R, Michelson H (1991) A model of a CA3 hippocampal pyramidal neuron incorporating voltage-clamp data on intrinsic conductances. J Neurophysiol 66:635-50 [Journal] [PubMed]
Waters J, Schaefer A, Sakmann B (2005) Backpropagating action potentials in neurones: measurement, mechanisms and potential functions. Prog Biophys Mol Biol 87:145-70 [Journal] [PubMed]
Zhang F, Prigge M, Beyrière F, Tsunoda SP, Mattis J, Yizhar O, Hegemann P, Deisseroth K (2008) Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri. Nat Neurosci 11:631-3 [Journal] [PubMed]
Zhang F, Wang LP, Boyden ES, Deisseroth K (2006) Channelrhodopsin-2 and optical control of excitable cells. Nat Methods 3:785-92 [Journal] [PubMed]
Foutz TJ, Arlow RL, McIntyre CC (2012) Theoretical principles underlying optical stimulation of a channelrhodopsin-2 positive pyramidal neuron. J Neurophysiol 107:3235-45 [Journal] [PubMed]
   Optical stimulation of a channelrhodopsin-2 positive pyramidal neuron model (Foutz et al 2012) [Model]
Grossman N, Simiaki V, Martinet C, Toumazou C, Schultz SR, Nikolic K (2013) The spatial pattern of light determines the kinetics and modulates backpropagation of optogenetic action potentials. J Comput Neurosci 34:477-88 [Journal] [PubMed]
Stefanescu RA, Shivakeshavan RG, Khargonekar PP, Talathi SS (2013) Computational modeling of channelrhodopsin-2 photocurrent characteristics in relation to neural signaling. Bull Math Biol 75:2208-40 [Journal] [PubMed]
   Computational modelling of channelrhodopsin-2 photocurrent characteristics (Stefanescu et al. 2013) [Model]
(37 refs)