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Foutz TJ, Arlow RL, McIntyre CC (2012) Theoretical principles underlying optical stimulation of a channelrhodopsin-2 positive pyramidal neuron. J Neurophysiol 107:3235-45 [PubMed]

   Optical stimulation of a channelrhodopsin-2 positive pyramidal neuron model (Foutz et al 2012)

References and models cited by this paper

References and models that cite this paper

Aravanis AM, Wang LP, Zhang F, Meltzer LA, Mogri MZ, Schneider MB, Deisseroth K (2007) An optical neural interface: in vivo control of rodent motor cortex with integrated fiberoptic and optogenetic technology. J Neural Eng 4:S143-56 [Journal] [PubMed]
Berndt A, Prigge M, Gradmann D, Hegemann P (2010) Two open states with progressive proton selectivities in the branched channelrhodopsin-2 photocycle. Biophys J 98:753-61 [Journal] [PubMed]
Berndt A, Schoenenberger P, Mattis J, Tye KM, Deisseroth K, Hegemann P, Oertner TG (2011) High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels. Proc Natl Acad Sci U S A 108:7595-600 [Journal] [PubMed]
Deisseroth K, Feng G, Majewska AK, Miesenböck G, Ting A, Schnitzer MJ (2006) Next-generation optical technologies for illuminating genetically targeted brain circuits. J Neurosci 26:10380-6 [Journal] [PubMed]
Ehlenbeck S, Gradmann D, Braun FJ, Hegemann P (2002) Evidence for a light-induced H(+) conductance in the eye of the green alga Chlamydomonas reinhardtii. Biophys J 82:740-51 [Journal] [PubMed]
Ernst OP, Sánchez Murcia PA, Daldrop P, Tsunoda SP, Kateriya S, Hegemann P (2008) Photoactivation of channelrhodopsin. J Biol Chem 283:1637-43 [Journal] [PubMed]
Foutz TJ, Mcintyre CC (2010) Optical stimulation of multi-compartment cable neuron models with channelrhodopsin-2 Society for Neuroscience 106.15
Foutz TJ, Mcintyre CC (2011) Computational analysis of optogenetics: fiber optic stimulation of a channelrhodopsin-2 positive pyramidal neuron Society for Neuroscience 306.19
Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K (2009) Optical deconstruction of parkinsonian neural circuitry. Science 324:354-9 [Journal] [PubMed]
Grossman N, Nikolic K, Toumazou C, Degenaar P (2011) Modeling study of the light stimulation of a neuron cell with channelrhodopsin-2 mutants. IEEE Trans Biomed Eng 58:1742-51 [Journal] [PubMed]
Grubb MS, Burrone J (2010) Channelrhodopsin-2 localised to the axon initial segment. PLoS One 5:e13761 [Journal] [PubMed]
Han X, Qian X, Bernstein JG, Zhou HH, Franzesi GT, Stern P, Bronson RT, Graybiel AM, Desimone R, Boyden ES (2009) Millisecond-timescale optical control of neural dynamics in the nonhuman primate brain. Neuron 62:191-8 [Journal] [PubMed]
Hegemann P, Ehlenbeck S, Gradmann D (2005) Multiple photocycles of channelrhodopsin. Biophys J 89:3911-8 [Journal] [PubMed]
Henderson JM, Federici T, Boulis N (2009) Optogenetic neuromodulation. Neurosurgery 64:796-804; discussion 804 [Journal] [PubMed]
Hu W, Tian C, Li T, Yang M, Hou H, Shu Y (2009) Distinct contributions of Na(v)1.6 and Na(v)1.2 in action potential initiation and backpropagation. Nat Neurosci 12:996-1002 [Journal] [PubMed]
   Action Potential initiation and backpropagation in Neocortical L5 Pyramidal Neuron (Hu et al. 2009) [Model]
Kubelka P, Munk F (1931) Ein beitrag zur optik der farbanstriche Z Tech Physik 12:593-601
Lewis TL, Mao T, Arnold DB (2011) A role for myosin VI in the localization of axonal proteins. PLoS Biol 9:e1001021 [Journal] [PubMed]
Lewis TL, Mao T, Svoboda K, Arnold DB (2009) Myosin-dependent targeting of transmembrane proteins to neuronal dendrites. Nat Neurosci 12:568-76 [Journal] [PubMed]
Lin JY (2011) A user's guide to channelrhodopsin variants: features, limitations and future developments. Exp Physiol 96:19-25 [Journal] [PubMed]
Lin JY, Lin MZ, Steinbach P, Tsien RY (2009) Characterization of engineered channelrhodopsin variants with improved properties and kinetics. Biophys J 96:1803-14 [Journal] [PubMed]
Llewellyn ME, Thompson KR, Deisseroth K, Delp SL (2010) Orderly recruitment of motor units under optical control in vivo. Nat Med 16:1161-5 [Journal] [PubMed]
Mainen ZF, Joerges J, Huguenard JR, Sejnowski TJ (1995) A model of spike initiation in neocortical pyramidal neurons. Neuron 15:1427-39 [PubMed]
   Spike Initiation in Neocortical Pyramidal Neurons (Mainen et al 1995) [Model]
Mainen ZF, Sejnowski TJ (1996) Influence of dendritic structure on firing pattern in model neocortical neurons. Nature 382:363-6 [Journal] [PubMed]
   Influence of dendritic structure on neocortical neuron firing patterns (Mainen and Sejnowski 1996) [Model]
McIntyre CC, Grill WM (1999) Excitation of central nervous system neurons by nonuniform electric fields. Biophys J 76:878-88 [Journal] [PubMed]
McNeal DR (1976) Analysis of a model for excitation of myelinated nerve. IEEE Trans Biomed Eng 23:329-37 [PubMed]
Müller M, Bamann C, Bamberg E, Kühlbrandt W (2011) Projection structure of channelrhodopsin-2 at 6 Å resolution by electron crystallography. J Mol Biol 414:86-95 [Journal] [PubMed]
Nagel G, Möckel B, Büldt G, Bamberg E (1995) Functional expression of bacteriorhodopsin in oocytes allows direct measurement of voltage dependence of light induced H+ pumping. FEBS Lett 377:263-6 [PubMed]
Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, Ollig D, Hegemann P, Bamberg E (2003) Channelrhodopsin-2, a directly light-gated cation-selective membrane channel. Proc Natl Acad Sci U S A 100:13940-5 [Journal] [PubMed]
Nikolic K, Grossman N, Grubb MS, Burrone J, Toumazou C, Degenaar P (2009) Photocycles of channelrhodopsin-2. Photochem Photobiol 85:400-11 [Journal] [PubMed]
Rickgauer JP, Tank DW (2009) Two-photon excitation of channelrhodopsin-2 at saturation. Proc Natl Acad Sci U S A 106:15025-30 [Journal] [PubMed]
Ritter E, Stehfest K, Berndt A, Hegemann P, Bartl FJ (2008) Monitoring light-induced structural changes of Channelrhodopsin-2 by UV-visible and Fourier transform infrared spectroscopy. J Biol Chem 283:35033-41 [Journal] [PubMed]
Schoenenberger P, Grunditz A, Rose T, Oertner TG (2008) Optimizing the spatial resolution of Channelrhodopsin-2 activation. Brain Cell Biol 36:119-27 [Journal] [PubMed]
Schoenenberger P, Schärer YP, Oertner TG (2011) Channelrhodopsin as a tool to investigate synaptic transmission and plasticity. Exp Physiol 96:34-9 [Journal] [PubMed]
Shu Y, Hasenstaub A, Duque A, Yu Y, McCormick DA (2006) Modulation of intracortical synaptic potentials by presynaptic somatic membrane potential. Nature 441:761-5 [Journal] [PubMed]
   Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007) [Model]
Sparta DR, Stamatakis AM, Phillips JL, Hovelsø N, van Zessen R, Stuber GD (2011) Construction of implantable optical fibers for long-term optogenetic manipulation of neural circuits. Nat Protoc 7:12-23 [Journal] [PubMed]
Stuart G, Spruston N (1998) Determinants of voltage attenuation in neocortical pyramidal neuron dendrites. J Neurosci 18:3501-10 [PubMed]
   Pyramidal Neuron Deep: attenuation in dendrites (Stuart, Spruston 1998) [Model]
Tønnesen J, Sørensen AT, Deisseroth K, Lundberg C, Kokaia M (2009) Optogenetic control of epileptiform activity. Proc Natl Acad Sci U S A 106:12162-7 [Journal] [PubMed]
Vo-Dinh T (2003) Biomedical Photonics Handbook
Wang H, Peca J, Matsuzaki M, Matsuzaki K, Noguchi J, Qiu L, Wang D, Zhang F, Boyden E, Deisseroth K, Kasai H, Hall WC, Feng G, Augustine GJ (2007) High-speed mapping of synaptic connectivity using photostimulation in Channelrhodopsin-2 transgenic mice. Proc Natl Acad Sci U S A 104:8143-8 [Journal] [PubMed]
Weik M (1997) Fiber Optics Standard Dictionary
Yu Y, Shu Y, McCormick DA (2008) Cortical action potential backpropagation explains spike threshold variability and rapid-onset kinetics. J Neurosci 28:7260-72 [Journal] [PubMed]
   AP back-prop. explains threshold variability and rapid rise (McCormick et al. 2007, Yu et al. 2008) [Model]
Zhang F, Aravanis AM, Adamantidis A, de Lecea L, Deisseroth K (2007) Circuit-breakers: optical technologies for probing neural signals and systems. Nat Rev Neurosci 8:577-81 [Journal] [PubMed]
Zhang F, Prigge M, Beyrière F, Tsunoda SP, Mattis J, Yizhar O, Hegemann P, Deisseroth K (2008) Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri. Nat Neurosci 11:631-3 [Journal] [PubMed]
(47 refs)