Citation Relationships

Legends: Link to a Model Reference cited by multiple papers


Hay E, Segev I (2015) Dendritic Excitability and Gain Control in Recurrent Cortical Microcircuits. Cereb Cortex 25:3561-71 [PubMed]

   Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018)

   Microcircuits of L5 thick tufted pyramidal cells (Hay & Segev 2015)

References and models cited by this paper

References and models that cite this paper

Anderson CT, Sheets PL, Kiritani T, Shepherd GM (2010) Sublayer-specific microcircuits of corticospinal and corticostriatal neurons in motor cortex. Nat Neurosci 13:739-44 [Journal] [PubMed]
Ben-Yishai R, Bar-Or RL, Sompolinsky H (1995) Theory of orientation tuning in visual cortex. Proc Natl Acad Sci U S A 92:3844-8 [PubMed]
Binzegger T, Douglas RJ, Martin KA (2004) A quantitative map of the circuit of cat primary visual cortex. J Neurosci 24:8441-53 [Journal] [PubMed]
Bruno RM (2011) Synchrony in sensation. Curr Opin Neurobiol 21:701-8 [Journal] [PubMed]
Buesing L, Bill J, Nessler B, Maass W (2011) Neural dynamics as sampling: a model for stochastic computation in recurrent networks of spiking neurons. PLoS Comput Biol 7:e1002211 [Journal] [PubMed]
Buonomano DV, Maass W (2009) State-dependent computations: spatiotemporal processing in cortical networks. Nat Rev Neurosci 10:113-25 [Journal] [PubMed]
Chalifoux JR, Carter AG (2011) GABAB receptor modulation of voltage-sensitive calcium channels in spines and dendrites. J Neurosci 31:4221-32 [Journal] [PubMed]
Chance FS, Nelson SB, Abbott LF (1999) Complex cells as cortically amplified simple cells. Nat Neurosci 2:277-82 [Journal] [PubMed]
Constantinople CM, Bruno RM (2011) Effects and mechanisms of wakefulness on local cortical networks. Neuron 69:1061-8 [Journal] [PubMed]
Constantinople CM, Bruno RM (2013) Deep cortical layers are activated directly by thalamus. Science 340:1591-4 [Journal] [PubMed]
de Kock CP, Bruno RM, Spors H, Sakmann B (2007) Layer- and cell-type-specific suprathreshold stimulus representation in rat primary somatosensory cortex. J Physiol 581:139-54 [Journal] [PubMed]
Destexhe A, Mainen ZF, Sejnowski TJ (1994) Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism. J Comput Neurosci 1:195-230 [PubMed]
   Application of a common kinetic formalism for synaptic models (Destexhe et al 1994) [Model]
   Kinetic synaptic models applicable to building networks (Destexhe et al 1998) [Model]
Douglas RJ, Koch C, Mahowald M, Martin KA, Suarez HH (1995) Recurrent excitation in neocortical circuits. Science 269:981-5 [PubMed]
Douglas RJ, Martin KA (2004) Neuronal circuits of the neocortex. Annu Rev Neurosci 27:419-51 [Journal] [PubMed]
Douglas RJ, Martin KA (2007) Mapping the matrix: the ways of neocortex. Neuron 56:226-38 [Journal] [PubMed]
Druckmann S, Banitt Y, Gidon A, Schürmann F, Markram H, Segev I (2007) A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data. Front Neurosci 1:7-18 [Journal] [PubMed]
Felleman DJ, Van Essen DC (1991) Distributed hierarchical processing in the primate cerebral cortex. Cereb Cortex 1:1-47 [PubMed]
Frick A, Feldmeyer D, Sakmann B (2007) Postnatal development of synaptic transmission in local networks of L5A pyramidal neurons in rat somatosensory cortex. J Physiol 585:103-16 [Journal] [PubMed]
Fuhrmann G, Segev I, Markram H, Tsodyks M (2002) Coding of temporal information by activity-dependent synapses. J Neurophysiol 87:140-8 [Journal] [PubMed]
Gentet LJ, Avermann M, Matyas F, Staiger JF, Petersen CC (2010) Membrane potential dynamics of GABAergic neurons in the barrel cortex of behaving mice. Neuron 65:422-35 [Journal] [PubMed]
Gidon A, Segev I (2012) Principles governing the operation of synaptic inhibition in dendrites. Neuron 75:330-41 [Journal] [PubMed]
   Principles governing the operation of synaptic inhibition in dendrites (Gidon & Segev 2012) [Model]
Gilbert CD, Wiesel TN (1979) Morphology and intracortical projections of functionally characterised neurones in the cat visual cortex. Nature 280:120-5 [PubMed]
Gupta A, Wang Y, Markram H (2000) Organizing principles for a diversity of GABAergic interneurons and synapses in the neocortex. Science 287:273-8 [PubMed]
Haider B, Häusser M, Carandini M (2013) Inhibition dominates sensory responses in the awake cortex. Nature 493:97-100 [Journal] [PubMed]
Heimel JA, Van Hooser SD, Nelson SB (2005) Laminar organization of response properties in primary visual cortex of the gray squirrel (Sciurus carolinensis). J Neurophysiol 94:3538-54 [Journal] [PubMed]
Heinzle J, Hepp K, Martin KA (2010) A biologically realistic cortical model of eye movement control in reading. Psychol Rev 117:808-30 [Journal] [PubMed]
Helmchen F, Svoboda K, Denk W, Tank DW (1999) In vivo dendritic calcium dynamics in deep-layer cortical pyramidal neurons. Nat Neurosci 2:989-96 [Journal] [PubMed]
Hestrin S (1992) Activation and desensitization of glutamate-activated channels mediating fast excitatory synaptic currents in the visual cortex. Neuron 9:991-9 [PubMed]
Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM (2004) ModelDB: A Database to Support Computational Neuroscience. J Comput Neurosci 17:7-11 [Journal] [PubMed]
Kampa BM, Letzkus JJ, Stuart GJ (2006) Cortical feed-forward networks for binding different streams of sensory information. Nat Neurosci 9:1472-3 [Journal] [PubMed]
Ko H, Hofer SB, Pichler B, Buchanan KA, Sjöström PJ, Mrsic-Flogel TD (2011) Functional specificity of local synaptic connections in neocortical networks. Nature 473:87-91 [Journal] [PubMed]
Larkum M (2013) A cellular mechanism for cortical associations: an organizing principle for the cerebral cortex. Trends Neurosci 36:141-51 [Journal] [PubMed]
Larkum ME, Nevian T, Sandler M, Polsky A, Schiller J (2009) Synaptic integration in tuft dendrites of layer 5 pyramidal neurons: a new unifying principle. Science 325:756-60 [Journal] [PubMed]
   Synaptic integration in tuft dendrites of layer 5 pyramidal neurons (Larkum et al. 2009) [Model]
Larkum ME, Senn W, Lüscher HR (2004) Top-down dendritic input increases the gain of layer 5 pyramidal neurons. Cereb Cortex 14:1059-70 [Journal] [PubMed]
Larkum ME, Zhu JJ (2002) Signaling of layer 1 and whisker-evoked Ca2+ and Na+ action potentials in distal and terminal dendrites of rat neocortical pyramidal neurons in vitro and in vivo. J Neurosci 22:6991-7005 [Journal] [PubMed]
Larkum ME, Zhu JJ, Sakmann B (1999) A new cellular mechanism for coupling inputs arriving at different cortical layers. Nature 398:338-41 [Journal] [PubMed]
Lavzin M, Rapoport S, Polsky A, Garion L, Schiller J (2012) Nonlinear dendritic processing determines angular tuning of barrel cortex neurons in vivo. Nature 490:397-401 [Journal] [PubMed]
   Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012) [Model]
Li YT, Ibrahim LA, Liu BH, Zhang LI, Tao HW (2013) Linear transformation of thalamocortical input by intracortical excitation. Nat Neurosci 16:1324-30 [Journal] [PubMed]
Lien AD, Scanziani M (2013) Tuned thalamic excitation is amplified by visual cortical circuits. Nat Neurosci 16:1315-23 [Journal] [PubMed]
Litvak S, Ullman S (2009) Cortical circuitry implementing graphical models. Neural Comput 21:3010-56 [Journal] [PubMed]
Liu BH, Wu GK, Arbuckle R, Tao HW, Zhang LI (2007) Defining cortical frequency tuning with recurrent excitatory circuitry. Nat Neurosci 10:1594-600 [Journal] [PubMed]
Losonczy A, Magee JC (2006) Integrative properties of radial oblique dendrites in hippocampal CA1 pyramidal neurons. Neuron 50:291-307 [Journal] [PubMed]
Markram H, Lübke J, Frotscher M, Roth A, Sakmann B (1997) Physiology and anatomy of synaptic connections between thick tufted pyramidal neurones in the developing rat neocortex. J Physiol 500 ( Pt 2):409-40 [PubMed]
Meyer HS, Wimmer VC, Hemberger M, Bruno RM, de Kock CP, Frick A, Sakmann B, Helmstaedter M (2010) Cell type-specific thalamic innervation in a column of rat vibrissal cortex. Cereb Cortex 20:2287-303 [Journal] [PubMed]
Murayama M, Pérez-Garci E, Nevian T, Bock T, Senn W, Larkum ME (2009) Dendritic encoding of sensory stimuli controlled by deep cortical interneurons. Nature 457:1137-41 [Journal] [PubMed]
Olsen SR, Bortone DS, Adesnik H, Scanziani M (2012) Gain control by layer six in cortical circuits of vision. Nature 483:47-52 [Journal] [PubMed]
Palmer LM, Schulz JM, Murphy SC, Ledergerber D, Murayama M, Larkum ME (2012) The cellular basis of GABA(B)-mediated interhemispheric inhibition. Science 335:989-93 [Journal] [PubMed]
Palmer LM, Shai AS, Reeve JE, Anderson HL, Paulsen O, Larkum ME (2014) NMDA spikes enhance action potential generation during sensory input. Nat Neurosci 17:383-90 [Journal] [PubMed]
Papoutsi A, Sidiropoulou K, Cutsuridis V, Poirazi P (2013) Induction and modulation of persistent activity in a layer V PFC microcircuit model. Front Neural Circuits 7:161 [Journal] [PubMed]
   L5 PFC microcircuit used to study persistent activity (Papoutsi et al. 2014, 2013) [Model]
Perin R, Berger TK, Markram H (2011) A synaptic organizing principle for cortical neuronal groups. Proc Natl Acad Sci U S A 108:5419-24 [Journal] [PubMed]
Pfeffer CK, Xue M, He M, Huang ZJ, Scanziani M (2013) Inhibition of inhibition in visual cortex: the logic of connections between molecularly distinct interneurons. Nat Neurosci 16:1068-76 [Journal] [PubMed]
Polack PO, Friedman J, Golshani P (2013) Cellular mechanisms of brain state-dependent gain modulation in visual cortex. Nat Neurosci 16:1331-9 [Journal] [PubMed]
Polsky A, Mel B, Schiller J (2009) Encoding and decoding bursts by NMDA spikes in basal dendrites of layer 5 pyramidal neurons. J Neurosci 29:11891-903 [Journal] [PubMed]
   NMDA spikes in basal dendrites of L5 pyramidal neurons (Polsky et al. 2009) [Model]
Ramaswamy S, Hill SL, King JG, Schürmann F, Wang Y, Markram H (2012) Intrinsic morphological diversity of thick-tufted layer 5 pyramidal neurons ensures robust and invariant properties of in silico synaptic connections. J Physiol 590:737-52 [Journal] [PubMed]
Reimann MW, Anastassiou CA, Perin R, Hill SL, Markram H, Koch C (2013) A biophysically detailed model of neocortical local field potentials predicts the critical role of active membrane currents. Neuron 79:375-90 [Journal] [PubMed]
Reyes A, Sakmann B (1999) Developmental switch in the short-term modification of unitary EPSPs evoked in layer 2/3 and layer 5 pyramidal neurons of rat neocortex. J Neurosci 19:3827-35 [PubMed]
Rhodes P (2006) The properties and implications of NMDA spikes in neocortical pyramidal cells. J Neurosci 26:6704-15 [Journal] [PubMed]
Ringach DL, Shapley RM, Hawken MJ (2002) Orientation selectivity in macaque V1: diversity and laminar dependence. J Neurosci 22:5639-51 [Journal] [PubMed]
Salin PA, Prince DA (1996) Electrophysiological mapping of GABAA receptor-mediated inhibition in adult rat somatosensory cortex. J Neurophysiol 75:1589-600 [Journal] [PubMed]
Sarid L, Bruno R, Sakmann B, Segev I, Feldmeyer D (2007) Modeling a layer 4-to-layer 2/3 module of a single column in rat neocortex: interweaving in vitro and in vivo experimental observations. Proc Natl Acad Sci U S A 104:16353-8 [Journal] [PubMed]
Schiller J, Major G, Koester HJ, Schiller Y (2000) NMDA spikes in basal dendrites of cortical pyramidal neurons. Nature 404:285-9 [Journal] [PubMed]
Schiller J, Schiller Y (2001) NMDA receptor-mediated dendritic spikes and coincident signal amplification. Curr Opin Neurobiol 11:343-8 [PubMed]
Silberberg G, Markram H (2007) Disynaptic inhibition between neocortical pyramidal cells mediated by Martinotti cells. Neuron 53:735-46 [Journal] [PubMed]
Song S, Sjöström PJ, Reigl M, Nelson S, Chklovskii DB (2005) Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS Biol 3:e68 [Journal] [PubMed]
Stuart GJ, Häusser M (2001) Dendritic coincidence detection of EPSPs and action potentials. Nat Neurosci 4:63-71 [Journal] [PubMed]
Suarez H, Koch C, Douglas R (1995) Modeling direction selectivity of simple cells in striate visual cortex within the framework of the canonical microcircuit. J Neurosci 15:6700-19 [PubMed]
Takahashi H, Magee JC (2009) Pathway interactions and synaptic plasticity in the dendritic tuft regions of CA1 pyramidal neurons. Neuron 62:102-11 [Journal] [PubMed]
Thomson AM, Lamy C (2007) Functional maps of neocortical local circuitry. Front Neurosci 1:19-42 [Journal] [PubMed]
Tsodyks MV, Markram H (1997) The neural code between neocortical pyramidal neurons depends on neurotransmitter release probability. Proc Natl Acad Sci U S A 94:719-23 [PubMed]
Vaidya SP, Johnston D (2013) Temporal synchrony and gamma-to-theta power conversion in the dendrites of CA1 pyramidal neurons. Nat Neurosci 16:1812-20 [Journal] [PubMed]
Van Hooser SD (2007) Similarity and diversity in visual cortex: is there a unifying theory of cortical computation? Neuroscientist 13:639-56 [Journal] [PubMed]
Williams SR, Atkinson SE (2007) Pathway-specific use-dependent dynamics of excitatory synaptic transmission in rat intracortical circuits. J Physiol 585:759-77 [Journal] [PubMed]
Xu NL, Harnett MT, Williams SR, Huber D, O'Connor DH, Svoboda K, Magee JC (2012) Nonlinear dendritic integration of sensory and motor input during an active sensing task. Nature 492:247-51 [Journal] [PubMed]
Yoshimura Y, Callaway EM (2005) Fine-scale specificity of cortical networks depends on inhibitory cell type and connectivity. Nat Neurosci 8:1552-9 [Journal] [PubMed]
Yoshimura Y, Dantzker JL, Callaway EM (2005) Excitatory cortical neurons form fine-scale functional networks. Nature 433:868-73 [Journal] [PubMed]
Egger R, Schmitt AC, Wallace DJ, Sakmann B, Oberlaender M, Kerr JN (2015) Robustness of sensory-evoked excitation is increased by inhibitory inputs to distal apical tuft dendrites. Proc Natl Acad Sci U S A 112:14072-7 [Journal] [PubMed]
   Distal inhibitory control of sensory-evoked excitation (Egger, Schmitt et al. 2015) [Model]
Mäki-Marttunen T, Halnes G, Devor A, Metzner C, Dale AM, Andreassen OA, Einevoll GT (2018) A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. J Neurosci Methods 293:264-283 [Journal] [PubMed]
   Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]
Mäki-Marttunen T, Halnes G, Devor A, Witoelar A, Bettella F, Djurovic S, Wang Y, Einevoll GT, Andreassen OA, Dale AM (2016) Functional Effects of Schizophrenia-Linked Genetic Variants on Intrinsic Single-Neuron Excitability: A Modeling Study. Biol Psychiatry Cogn Neurosci Neuroimaging 1:49-59 [Journal] [PubMed]
   Schiz.-linked gene effects on intrinsic single-neuron excitability (Maki-Marttunen et al. 2016) [Model]
Zylbertal A, Yarom Y, Wagner S (2017) The Slow Dynamics of Intracellular Sodium Concentration Increase the Time Window of Neuronal Integration: A Simulation Study Front. Comput. Neurosci. 11(85):1-16 [Journal]
   Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]
(87 refs)