Citation Relationships

Legends: Link to a Model Reference cited by multiple papers


Parasuram H, Nair B, D'Angelo E, Hines M, Naldi G, Diwakar S (2016) Computational Modeling of Single Neuron Extracellular Electric Potentials and Network Local Field Potentials using LFPsim. Front Comput Neurosci 10:65 [PubMed]

  • Modeling single neuron LFPs and extracellular potentials with LFPsim (Parasuram et al. 2016)

References and models cited by this paper

References and models that cite this paper

Bédard C, Kröger H, Destexhe A (2004) Modeling extracellular field potentials and the frequency-filtering properties of extracellular space. Biophys J 86:1829-42 [Journal] [PubMed]
  • Modeling local field potentials (Bedard et al. 2004) [Model]
Bédard C, Kröger H, Destexhe A (2006) Model of low-pass filtering of local field potentials in brain tissue. Phys Rev E Stat Nonlin Soft Matter Phys 73:051911 [Journal] [PubMed]
BeMent SL, Wise KD, Anderson DJ, Najafi K, Drake KL (1986) Solid-state electrodes for multichannel multiplexed intracortical neuronal recording. IEEE Trans Biomed Eng 33:230-41 [Journal] [PubMed]
Bower JM, Woolston DC (1983) Congruence of spatial organization of tactile projections to granule cell and Purkinje cell layers of cerebellar hemispheres of the albino rat: vertical organization of cerebellar cortex. J Neurophysiol 49:745-66 [Journal] [PubMed]
Buzsáki G (2004) Large-scale recording of neuronal ensembles. Nat Neurosci 7:446-51 [Journal] [PubMed]
Buzsaki G (2006) Rhythms of the Brain
Buzsáki G, Anastassiou CA, Koch C (2012) The origin of extracellular fields and currents--EEG, ECoG, LFP and spikes. Nat Rev Neurosci 13:407-20 [Journal] [PubMed]
Caton R (1874) The electric currents of the brain British Medical Journal 2:265-278
Colgin LL, Denninger T, Fyhn M, Hafting T, Bonnevie T, Jensen O, Moser MB, Moser EI (2009) Frequency of gamma oscillations routes flow of information in the hippocampus. Nature 462:353-7 [Journal] [PubMed]
D'Angelo E, Nieus T, Maffei A, Armano S, Rossi P, Taglietti V, Fontana A, Naldi G (2001) Theta-frequency bursting and resonance in cerebellar granule cells: experimental evidence and modeling of a slow k+-dependent mechanism. J Neurosci 21:759-70 [PubMed]
  • Bursting and resonance in cerebellar granule cells (D'Angelo et al. 2001) [Model]
De Schutter E (2010) Computational modeling methods for neuroscientists
Di S, Baumgartner C, Barth DS (1990) Laminar analysis of extracellular field potentials in rat vibrissa/barrel cortex. J Neurophysiol 63:832-40 [Journal] [PubMed]
Diwakar S, Lombardo P, Solinas S, Naldi G, D'Angelo E (2011) Local field potential modeling predicts dense activation in cerebellar granule cells clusters under LTP and LTD control. PLoS One 6:e21928 [Journal] [PubMed]
  • Reconstructing cerebellar granule layer evoked LFP using convolution (ReConv) (Diwakar et al. 2011) [Model]
Diwakar S, Magistretti J, Goldfarb M, Naldi G, D'Angelo E (2009) Axonal Na+ channels ensure fast spike activation and back-propagation in cerebellar granule cells. J Neurophysiol 101:519-32 [Journal] [PubMed]
  • Multicompartmental cerebellar granule cell model (Diwakar et al. 2009) [Model]
ECCLES JC (1951) Interpretation of action potentials evoked in the cerebral cortex. Electroencephalogr Clin Neurophysiol 3:449-64 [PubMed]
Egert U, Heck D, Aertsen A (2002) Two-dimensional monitoring of spiking networks in acute brain slices. Exp Brain Res 142:268-74 [Journal] [PubMed]
Einevoll GT, Kayser C, Logothetis NK, Panzeri S (2013) Modelling and analysis of local field potentials for studying the function of cortical circuits. Nat Rev Neurosci 14:770-85 [Journal] [PubMed]
Ferrante M, Blackwell KT, Migliore M, Ascoli GA (2008) Computational models of neuronal biophysics and the characterization of potential neuropharmacological targets. Curr Med Chem 15:2456-71 [PubMed]
  • Computational neuropharmacology of CA1 pyramidal neuron (Ferrante et al. 2008) [Model]
Glabska H, Potworowski J, Leski S, Wójcik DK (2014) Independent components of neural activity carry information on individual populations. PLoS One 9:e105071 [Journal] [PubMed]
Gleeson PPIASINIE,Crook S,Cannon R,Steuber V,Jaeger D,Et AL (2012) The Open Source Brain Initiative: enabling collaborative modelling in computational neuroscience Twenty First Annual Computational Neuroscience Meeting: CNS*2012
Gold C, Henze DA, Koch C (2007) Using extracellular action potential recordings to constrain compartmental models. J Comput Neurosci 23:39-58 [Journal] [PubMed]
  • Extracellular Action Potential Simulations (Gold et al 2007) [Model]
Gold C, Henze DA, Koch C, Buzsáki G (2006) On the origin of the extracellular action potential waveform: A modeling study. J Neurophysiol 95:3113-28 [Journal] [PubMed]
  • Extracellular Action Potential Simulations (Gold et al 2007) [Model]
Goto T, Hatanaka R, Ogawa T, Sumiyoshi A, Riera J, Kawashima R (2010) An evaluation of the conductivity profile in the somatosensory barrel cortex of Wistar rats. J Neurophysiol 104:3388-412 [Journal] [PubMed]
Hagen E, Ness TV, Khosrowshahi A, Sørensen C, Fyhn M, Hafting T, Franke F, Einevoll GT (2015) ViSAPy: a Python tool for biophysics-based generation of virtual spiking activity for evaluation of spike-sorting algorithms. J Neurosci Methods 245:182-204 [Journal] [PubMed]
Hämäläinen M,Hari R,Ilmoniemi RJ,Knuutila J,Lounasmaa OV (1993) Magnetoencephalography—theory, instrumentation, and applications to noninvasive studies of the working human brain Rev. Mod. Phys. 65:413-497
Hartmanis J (1971) Computational complexity of random access stored program machines. Math. Syst. Theory 5:232-245
Hines ML, Carnevale NT (1997) The NEURON simulation environment. Neural Comput 9:1179-209 [PubMed]
Hines ML, Carnevale NT (2000) Expanding NEURON's repertoire of mechanisms with NMODL. Neural Comput 12:995-1007 [Journal] [PubMed]
Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM (2004) ModelDB: A Database to Support Computational Neuroscience. J Comput Neurosci 17:7-11 [Journal] [PubMed]
Holt G (1998) A Critical Reexamination of Some Assumptions and Implications of Cable Theory in Neurobiology. PhD thesis [Journal]
  • Extracellular Action Potential Simulations (Gold et al 2007) [Model]
Holt GR, Koch C (1999) Electrical interactions via the extracellular potential near cell bodies. J Comput Neurosci 6:169-84 [Journal] [PubMed]
  • Extracellular Action Potential Simulations (Gold et al 2007) [Model]
Hu W, Tian C, Li T, Yang M, Hou H, Shu Y (2009) Distinct contributions of Na(v)1.6 and Na(v)1.2 in action potential initiation and backpropagation. Nat Neurosci 12:996-1002 [Journal] [PubMed]
  • Action Potential initiation and backpropagation in Neocortical L5 Pyramidal Neuron (Hu et al. 2009) [Model]
Johnston D, Wu SMS (1995) Foundations of Cellular Neurophysiology with simulations and illustrations by Richard Gray Foundations of Cellular Neurophysiology
Kandel A, Buzsáki G (1997) Cellular-synaptic generation of sleep spindles, spike-and-wave discharges, and evoked thalamocortical responses in the neocortex of the rat. J Neurosci 17:6783-97 [PubMed]
Li G, Cleland TA (2013) A two-layer biophysical model of cholinergic neuromodulation in olfactory bulb. J Neurosci 33:3037-58 [Journal] [PubMed]
  • A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013) [Model]
Lindén H, Hagen E, Leski S, Norheim ES, Pettersen KH, Einevoll GT (2013) LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons. Front Neuroinform 7:41 [Journal] [PubMed]
Mainen ZF, Sejnowski TJ (1996) Influence of dendritic structure on firing pattern in model neocortical neurons. Nature 382:363-6 [Journal] [PubMed]
  • Influence of dendritic structure on neocortical neuron firing patterns (Mainen and Sejnowski 1996) [Model]
Mapelli J, D'Angelo E (2007) The spatial organization of long-term synaptic plasticity at the input stage of cerebellum. J Neurosci 27:1285-96 [Journal] [PubMed]
Mapelli J, Gandolfi D, D'Angelo E (2010) Combinatorial responses controlled by synaptic inhibition in the cerebellum granular layer. J Neurophysiol 103:250-61 [Journal] [PubMed]
Mehring C, Rickert J, Vaadia E, Cardosa de Oliveira S, Aertsen A, Rotter S (2003) Inference of hand movements from local field potentials in monkey motor cortex. Nat Neurosci 6:1253-4 [Journal] [PubMed]
Migliore M, Morse TM, Davison AP, Marenco L, Shepherd GM, Hines ML (2003) ModelDB: making models publicly accessible to support computational neuroscience. Neuroinformatics 1:135-9 [Journal] [PubMed]
Mineault PJ, Zanos TP, Pack CC (2013) Local field potentials reflect multiple spatial scales in V4. Front Comput Neurosci 7:21 [Journal] [PubMed]
Mitzdorf U (1985) Current source-density method and application in cat cerebral cortex: investigation of evoked potentials and EEG phenomena. Physiol Rev 65:37-100 [Journal] [PubMed]
Montgomery SM, Buzsáki G (2007) Gamma oscillations dynamically couple hippocampal CA3 and CA1 regions during memory task performance. Proc Natl Acad Sci U S A 104:14495-500 [Journal] [PubMed]
Morgan RJ, Soltesz I (2008) Nonrandom connectivity of the epileptic dentate gyrus predicts a major role for neuronal hubs in seizures. Proc Natl Acad Sci U S A 105:6179-84 [Journal] [PubMed]
  • Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) [Model]
Ness TV, Chintaluri C, Potworowski J, Leski S, Glabska H, Wójcik DK, Einevoll GT (2015) Modelling and Analysis of Electrical Potentials Recorded in Microelectrode Arrays (MEAs). Neuroinformatics 13:403-26 [Journal] [PubMed]
Nicholson C, Freeman JA (1975) Theory of current source-density analysis and determination of conductivity tensor for anuran cerebellum. J Neurophysiol 38:356-68 [Journal] [PubMed]
Nieus T, Sola E, Mapelli J, Saftenku E, Rossi P, D'Angelo E (2006) LTP regulates burst initiation and frequency at mossy fiber-granule cell synapses of rat cerebellum: experimental observations and theoretical predictions. J Neurophysiol 95:686-99 [Journal] [PubMed]
  • Short term plasticity at the cerebellar granule cell (Nieus et al. 2006) [Model]
Parasuram H, Nair B, Naldi G, D'Angelo E, Diwakar S (2011) A modeling based study on the origin and nature of evoked post-synaptic local field potentials in granular layer. J Physiol Paris 105:71-82 [Journal] [PubMed]
Parasuram H,Nair B,Naldi G,D'Angelo E,Diwakar S (2015) Exploiting point source approximation on detailed neuronal models to reconstruct single neuron electric field and population LFP. 2015 International Joint Conference on Neural Networks (IJCNN) (IEEE) :1-7
Plonsey R (1969) Bioelectric Phenomena
Publio R, Oliveira RF, Roque AC (2009) A computational study on the role of gap junctions and rod Ih conductance in the enhancement of the dynamic range of the retina. PLoS One 4:e6970 [Journal] [PubMed]
  • A network model of the vertebrate retina (Publio et al. 2009) [Model]
Rall W, Shepherd GM (1968) Theoretical reconstruction of field potentials and dendrodendritic synaptic interactions in olfactory bulb. J Neurophysiol 31:884-915 [Journal] [PubMed]
  • Theoretical reconstrucion of field potentials and dendrodendritic synaptic...(Rall & Shepherd 1968) [Model]
Reimann MW, Anastassiou CA, Perin R, Hill SL, Markram H, Koch C (2013) A biophysically detailed model of neocortical local field potentials predicts the critical role of active membrane currents. Neuron 79:375-90 [Journal] [PubMed]
Rickert J, Oliveira SC, Vaadia E, Aertsen A, Rotter S, Mehring C (2005) Encoding of movement direction in different frequency ranges of motor cortical local field potentials. J Neurosci 25:8815-24 [Journal] [PubMed]
Rosenfalck P (1969) Intra- and extracellular potential fields of active nerve and muscle fibres. A physico-mathematical analysis of different models. Acta Physiol Scand Suppl 321:1-168 [PubMed]
Scherberger H, Jarvis MR, Andersen RA (2005) Cortical local field potential encodes movement intentions in the posterior parietal cortex. Neuron 46:347-54 [Journal] [PubMed]
Segev I, Fleshman JW, Burke RE (1989) Compartmental models of complex neurons Methods In Neuronal Modelling: From Synapses To Networks, Koch C:Segev I, ed. pp.63
Solinas S, Forti L, Cesana E, Mapelli J, De Schutter E, D'Angelo E (2007) Computational reconstruction of pacemaking and intrinsic electroresponsiveness in cerebellar Golgi cells. Front Cell Neurosci 1:2 [Journal] [PubMed]
  • Cerebellar Golgi cell (Solinas et al. 2007a, 2007b) [Model]
Solinas S, Nieus T, D'Angelo E (2010) A realistic large-scale model of the cerebellum granular layer predicts circuit spatio-temporal filtering properties. Front Cell Neurosci 4:12 [Journal] [PubMed]
Spira ME, Hai A (2013) Multi-electrode array technologies for neuroscience and cardiology. Nat Nanotechnol 8:83-94 [Journal] [PubMed]
Tomsett RJ, Ainsworth M, Thiele A, Sanayei M, Chen X, Gieselmann MA, Whittington MA, Cunningham MO, Kaiser M (2015) Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX): comparing multi-electrode recordings from simulated and biological mammalian cortical tissue. Brain Struct Funct 220:2333-53 [Journal] [PubMed]
  • Large-scale model of neocortical slice in vitro exhibiting persistent gamma (Tomsett et al. 2014) [Model]
Trayanova NA, Henriquez CS, Plonsey R (1990) Limitations of approximate solutions for computing the extracellular potential of single fibers and bundle equivalents. IEEE Trans Biomed Eng 37:22-35 [Journal] [PubMed]
Vierling-Claassen D, Cardin JA, Moore CI, Jones SR (2010) Computational modeling of distinct neocortical oscillations driven by cell-type selective optogenetic drive: separable resonant circuits controlled by low-threshold spiking and fast-spiking interneurons. Front Hum Neurosci 4:198 [Journal] [PubMed]
  • Engaging distinct oscillatory neocortical circuits (Vierling-Claassen et al. 2010) [Model]
Appukuttan S, Brain KL, Manchanda R (2017) Modeling extracellular fields for a three-dimensional network of cells using NEURON. J Neurosci Methods 290:27-38 [Journal] [PubMed]
  • Extracellular fields for a three-dimensional network of cells using NEURON (Appukuttan et al 2017) [Model]
Diwakar S, Medini C, Nair M, Parasuram H, Vijayan A, Nair B (2017) Computational Neuroscience of Timing, Plasticity and Function in Cerebellum Microcircuits (Chapter 12) Computational Neurology and Psychiatry, Springer Series in Bio-/Neuroinformatics, Érdi P:et al, ed. pp.343 [Journal]
  • Modeling single neuron LFPs and extracellular potentials with LFPsim (Parasuram et al. 2016) [Model]
Mondragón-González SL, Burguière E (2017) Bio-inspired benchmark generator for extracellular multi-unit recordings. Sci Rep 7:43253 [Journal] [PubMed]
Popovych OV, Lysyansky B, Rosenblum M, Pikovsky A, Tass PA (2017) Pulsatile desynchronizing delayed feedback for closed-loop deep brain stimulation. PLoS One 12:e0173363 [Journal] [PubMed]
(70 refs)