Citation Relationships

Legends: Link to a Model Reference cited by multiple papers

Gupta R, Reneaux M, Karmeshu (2016) Role of Heterogeneous Macromolecular Crowding and Geometrical Irregularity at Central Excitatory Synapses in Shaping Synaptic Transmission. PLoS One 11:e0167505 [PubMed]

   Spatially-varying glutamate diffusion coefficient at CA1 synaptic cleft space (Gupta et al. 2016)

References and models cited by this paper

References and models that cite this paper

Attwell D, Laughlin SB (2001) An energy budget for signaling in the grey matter of the brain. J Cereb Blood Flow Metab 21:1133-45 [Journal] [PubMed]
Barbour B, Keller BU, Llano I, Marty A (1994) Prolonged presence of glutamate during excitatory synaptic transmission to cerebellar Purkinje cells. Neuron 12:1331-43 [PubMed]
Beck C,Cohen EGD (2003) Superstatistics Physica A 322:267-275
Boucher J, Kröger H, Sík A (2010) Realistic modelling of receptor activation in hippocampal excitatory synapses: analysis of multivesicular release, release location, temperature and synaptic cross-talk. Brain Struct Funct 215:49-65 [Journal] [PubMed]
Budisantoso T, Harada H, Kamasawa N, Fukazawa Y, Shigemoto R, Matsui K (2013) Evaluation of glutamate concentration transient in the synaptic cleft of the rat calyx of Held. J Physiol 591:219-39 [Journal] [PubMed]
Burger PM, Mehl E, Cameron PL, Maycox PR, Baumert M, Lottspeich F, De Camilli P, Jahn R (1989) Synaptic vesicles immunoisolated from rat cerebral cortex contain high levels of glutamate. Neuron 3:715-20 [PubMed]
Clements JD (1996) Transmitter timecourse in the synaptic cleft: its role in central synaptic function. Trends Neurosci 19:163-71 [PubMed]
Clements JD, Lester RA, Tong G, Jahr CE, Westbrook GL (1992) The time course of glutamate in the synaptic cleft. Science 258:1498-501 [PubMed]
Cohen EGD (2004) Superstatistics Physica D 193:35-52
Cory SM, Glavinovic MI (2006) Molecular dynamics simulations of glutamate diffusion in synaptic cleft. Crit Rev Neurobiol 18:61-9 [PubMed]
Diamond JS, Jahr CE (1997) Transporters buffer synaptically released glutamate on a submillisecond time scale. J Neurosci 17:4672-87 [PubMed]
DiGregorio DA, Nusser Z, Silver RA (2002) Spillover of glutamate onto synaptic AMPA receptors enhances fast transmission at a cerebellar synapse. Neuron 35:521-33 [PubMed]
Dityatev A, Schachner M (2003) Extracellular matrix molecules and synaptic plasticity. Nat Rev Neurosci 4:456-68 [Journal] [PubMed]
Dityatev A, Schachner M, Sonderegger P (2010) The dual role of the extracellular matrix in synaptic plasticity and homeostasis. Nat Rev Neurosci 11:735-46 [Journal] [PubMed]
Franks KM, Bartol TM, Sejnowski TJ (2002) A Monte Carlo model reveals independent signaling at central glutamatergic synapses. Biophys J 83:2333-48 [Journal] [PubMed]
Franks KM, Stevens CF, Sejnowski TJ (2003) Independent sources of quantal variability at single glutamatergic synapses. J Neurosci 23:3186-95 [PubMed]
Freche D, Pannasch U, Rouach N, Holcman D (2011) Synapse geometry and receptor dynamics modulate synaptic strength. PLoS One 6:e25122 [Journal] [PubMed]
Harris KM, Jensen FE, Tsao B (1992) Three-dimensional structure of dendritic spines and synapses in rat hippocampus (CA1) at postnatal day 15 and adult ages: implications for the maturation of synaptic physiology and long-term potentiation. J Neurosci 12:2685-705 [PubMed]
Harris KM, Stevens JK (1989) Dendritic spines of CA 1 pyramidal cells in the rat hippocampus: serial electron microscopy with reference to their biophysical characteristics. J Neurosci 9:2982-97 [PubMed]
Harris KM, Sultan P (1995) Variation in the number, location and size of synaptic vesicles provides an anatomical basis for the nonuniform probability of release at hippocampal CA1 synapses. Neuropharmacology 34:1387-95 [PubMed]
Ichimura T, Hashimoto PH (1988) Structural components in the synaptic cleft captured by freeze-substitution and deep etching of directly frozen cerebellar cortex. J Neurocytol 17:3-12 [PubMed]
Kessler JP (2013) Control of cleft glutamate concentration and glutamate spill-out by perisynaptic glia: uptake and diffusion barriers. PLoS One 8:e70791 [Journal] [PubMed]
Kleinle J, Vogt K, Lüscher HR, Müller L, Senn W, Wyler K, Streit J (1996) Transmitter concentration profiles in the synaptic cleft: an analytical model of release and diffusion. Biophys J 71:2413-26 [Journal] [PubMed]
Lachamp P, Tell F, Kessler JP (2002) Successive episodes of synapses production in the developing rat nucleus tractus solitarii. J Neurobiol 52:336-42 [Journal] [PubMed]
Lacks DJ (2008) Tortuosity and anomalous diffusion in the neuromuscular junction. Phys Rev E Stat Nonlin Soft Matter Phys 77:041912 [Journal] [PubMed]
Land BR, Harris WV, Salpeter EE, Salpeter MM (1984) Diffusion and binding constants for acetylcholine derived from the falling phase of miniature endplate currents. Proc Natl Acad Sci U S A 81:1594-8 [PubMed]
Lerner (1993) Distributions of the diffusion coefficient for the quantum and classical diffusion in disordered media Nucl Phys A 560(1):274-292
Lisman JE, Raghavachari S, Tsien RW (2007) The sequence of events that underlie quantal transmission at central glutamatergic synapses. Nat Rev Neurosci 8:597-609 [Journal] [PubMed]
Longworth (1953) Diffusion measurement at 25 C of aqueous solutions of amino acids, peptides and sugars J Am Chem Soc 75(22):5705-5709
Magee JC, Cook EP (2000) Somatic EPSP amplitude is independent of synapse location in hippocampal pyramidal neurons. Nat Neurosci 3:895-903 [Journal] [PubMed]
   CA1 pyramidal neuron: Synaptic Scaling (Magee, Cook 2000) [Model]
Milstein AD, Zhou W, Karimzadegan S, Bredt DS, Nicoll RA (2007) TARP subtypes differentially and dose-dependently control synaptic AMPA receptor gating. Neuron 55:905-18 [Journal] [PubMed]
Namiki S, Sakamoto H, Iinuma S, Iino M, Hirose K (2007) Optical glutamate sensor for spatiotemporal analysis of synaptic transmission. Eur J Neurosci 25:2249-59 [Journal] [PubMed]
Nielsen TA, DiGregorio DA, Silver RA (2004) Modulation of glutamate mobility reveals the mechanism underlying slow-rising AMPAR EPSCs and the diffusion coefficient in the synaptic cleft. Neuron 42:757-71 [Journal] [PubMed]
Niven JE, Laughlin SB (2008) Energy limitation as a selective pressure on the evolution of sensory systems. J Exp Biol 211:1792-804 [Journal] [PubMed]
Nusser Z, Lujan R, Laube G, Roberts JD, Molnar E, Somogyi P (1998) Cell type and pathway dependence of synaptic AMPA receptor number and variability in the hippocampus. Neuron 21:545-59 [PubMed]
Okubo Y, Iino M (2011) Visualization of glutamate as a volume transmitter. J Physiol 589:481-8 [Journal] [PubMed]
Postlethwaite M, Hennig MH, Steinert JR, Graham BP, Forsythe ID (2007) Acceleration of AMPA receptor kinetics underlies temperature-dependent changes in synaptic strength at the rat calyx of Held. J Physiol 579:69-84 [PubMed]
   Modeling temperature changes in AMPAR kinetics (Postlethwaite et al 2007) [Model]
Raghavachari S, Lisman JE (2004) Properties of quantal transmission at CA1 synapses. J Neurophysiol 92:2456-67 [Journal] [PubMed]
Rambourg A, Leblond CP (1967) Electron microscope observations on the carbohydrate-rich cell coat present at the surface of cells in the rat. J Cell Biol 32:27-53 [PubMed]
Ronen I, Moeller S, Ugurbil K, Kim DS (2006) Analysis of the distribution of diffusion coefficients in cat brain at 9.4 T using the inverse Laplace transformation. Magn Reson Imaging 24:61-8 [Journal] [PubMed]
Rostaing P, Real E, Siksou L, Lechaire JP, Boudier T, Boeckers TM, Gertler F, Gundelfinger ED, Triller A, Marty S (2006) Analysis of synaptic ultrastructure without fixative using high-pressure freezing and tomography. Eur J Neurosci 24:3463-74 [Journal] [PubMed]
Rusakov DA, Kullmann DM (1998) Extrasynaptic glutamate diffusion in the hippocampus: ultrastructural constraints, uptake, and receptor activation. J Neurosci 18:3158-70 [PubMed]
Rusakov DA, Savtchenko LP, Zheng K, Henley JM (2011) Shaping the synaptic signal: molecular mobility inside and outside the cleft. Trends Neurosci 34:359-69 [Journal] [PubMed]
Saxton MJ (1997) Single-particle tracking: the distribution of diffusion coefficients. Biophys J 72:1744-53 [Journal] [PubMed]
Schikorski T, Stevens CF (1997) Quantitative ultrastructural analysis of hippocampal excitatory synapses. J Neurosci 17:5858-67 [PubMed]
Scimemi A, Beato M (2009) Determining the neurotransmitter concentration profile at active synapses. Mol Neurobiol 40:289-306 [Journal] [PubMed]
Sheng M, Hoogenraad CC (2007) The postsynaptic architecture of excitatory synapses: a more quantitative view. Annu Rev Biochem 76:823-47 [Journal] [PubMed]
Skaugen E, Walløe L (1979) Firing behaviour in a stochastic nerve membrane model based upon the Hodgkin-Huxley equations. Acta Physiol Scand 107:343-63 [Journal] [PubMed]
Stevens CF, Wang Y (1995) Facilitation and depression at single central synapses. Neuron 14:795-802 [PubMed]
Stylianopoulos T, Poh MZ, Insin N, Bawendi MG, Fukumura D, Munn LL, Jain RK (2010) Diffusion of particles in the extracellular matrix: the effect of repulsive electrostatic interactions. Biophys J 99:1342-9 [Journal] [PubMed]
Trommershäuser J, Marienhagen J, Zippelius A (1999) Stochastic model of central synapses: slow diffusion of transmitter interacting with spatially distributed receptors and transporters. J Theor Biol 198:101-20 [Journal] [PubMed]
Tzingounis AV, Wadiche JI (2007) Glutamate transporters: confining runaway excitation by shaping synaptic transmission. Nat Rev Neurosci 8:935-47 [Journal] [PubMed]
Ventriglia F (2011) Effect of filaments within the synaptic cleft on the response of excitatory synapses simulated by computer experiments. Biosystems 104:14-22 [Journal] [PubMed]
Wade WF, Freed JH, Edidin M (1989) Translational diffusion of class II major histocompatibility complex molecules is constrained by their cytoplasmic domains. J Cell Biol 109:3325-31 [PubMed]
Wang R, Zhang Z (2007) Energy coding in biological neural networks. Cogn Neurodyn 1:203-12 [Journal] [PubMed]
Yamashita T, Ishikawa T, Takahashi T (2003) Developmental increase in vesicular glutamate content does not cause saturation of AMPA receptors at the calyx of Held synapse. J Neurosci 23:3633-8 [PubMed]
Zuber B, Nikonenko I, Klauser P, Muller D, Dubochet J (2005) The mammalian central nervous synaptic cleft contains a high density of periodically organized complexes. Proc Natl Acad Sci U S A 102:19192-7 [Journal] [PubMed]
(58 refs)